data_5LYS # _entry.id 5LYS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.292 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5LYS WWPDB D_1200001592 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5LYS _pdbx_database_status.recvd_initial_deposition_date 2016-09-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Martinez-Zapien, D.' 1 'Legrand, P.' 2 'McEwen, A.G.' 3 'Pasquali, S.' 4 'Dock-Bregeon, A.-C.' 5 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 45 _citation.language ? _citation.page_first 3568 _citation.page_last 3579 _citation.title 'The crystal structure of the 5 functional domain of the transcription riboregulator 7SK.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkw1351 _citation.pdbx_database_id_PubMed 28082395 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Martinez-Zapien, D.' 1 primary 'Legrand, P.' 2 primary 'McEwen, A.G.' 3 primary 'Proux, F.' 4 primary 'Cragnolini, T.' 5 primary 'Pasquali, S.' 6 primary 'Dock-Bregeon, A.C.' 7 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 105.540 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5LYS _cell.details ? _cell.formula_units_Z ? _cell.length_a 47.320 _cell.length_a_esd ? _cell.length_b 47.830 _cell.length_b_esd ? _cell.length_c 69.230 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LYS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '7SK RNA' 18330.740 2 ? ? ? ? 2 non-polymer syn 'GOLD ION' 196.967 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 184 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GGGAUCUGUCACCCCAUUGAUCGCCUUCGGGCUGAUCUGGCUGGCUAGGCGGGUCC(CCC)' _entity_poly.pdbx_seq_one_letter_code_can GGGAUCUGUCACCCCAUUGAUCGCCUUCGGGCUGAUCUGGCUGGCUAGGCGGGUCCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 A n 1 5 U n 1 6 C n 1 7 U n 1 8 G n 1 9 U n 1 10 C n 1 11 A n 1 12 C n 1 13 C n 1 14 C n 1 15 C n 1 16 A n 1 17 U n 1 18 U n 1 19 G n 1 20 A n 1 21 U n 1 22 C n 1 23 G n 1 24 C n 1 25 C n 1 26 U n 1 27 U n 1 28 C n 1 29 G n 1 30 G n 1 31 G n 1 32 C n 1 33 U n 1 34 G n 1 35 A n 1 36 U n 1 37 C n 1 38 U n 1 39 G n 1 40 G n 1 41 C n 1 42 U n 1 43 G n 1 44 G n 1 45 C n 1 46 U n 1 47 A n 1 48 G n 1 49 G n 1 50 C n 1 51 G n 1 52 G n 1 53 G n 1 54 U n 1 55 C n 1 56 C n 1 57 CCC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 57 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5LYS _struct_ref.pdbx_db_accession 5LYS _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5LYS A 1 ? 57 ? 5LYS 24 ? 87 ? 24 87 2 1 5LYS B 1 ? 57 ? 5LYS 24 ? 87 ? 24 87 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 AU non-polymer . 'GOLD ION' ? 'Au 1' 196.967 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CCC 'RNA linking' n ;CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C9 H13 N3 O10 P2' 385.161 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5LYS _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.26 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '30% PEG 1000, 50 mM Tris pH 7.5, 50 to 75 mM NaCl, 50 mM MgCl2, 3% DMSO' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2010-11-11 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.04014 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.04014 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL # _reflns.B_iso_Wilson_estimate 54.98 _reflns.entry_id 5LYS _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.32 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 23716 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 93.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.9 _reflns.pdbx_Rmerge_I_obs 0.098 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.32 _reflns_shell.d_res_low 2.38 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.12 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 61.9 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.327 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.56 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.469 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -2.0225 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 5.3761 _refine.aniso_B[2][2] -1.8343 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 3.8568 _refine.B_iso_max 138.830 _refine.B_iso_mean 59.0500 _refine.B_iso_min 24.530 _refine.correlation_coeff_Fo_to_Fc 0.9576 _refine.correlation_coeff_Fo_to_Fc_free 0.9436 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5LYS _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.3200 _refine.ls_d_res_low 40.0000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12303 _refine.ls_number_reflns_R_free 491 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 93.8300 _refine.ls_percent_reflns_R_free 3.9900 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1866 _refine.ls_R_factor_R_free 0.2274 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1845 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'Theoretical model of RNA generated with RNAcomposer' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.2570 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.2760 _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI 0.9900 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 5LYS _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.314 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.3200 _refine_hist.d_res_low 40.0000 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 184 _refine_hist.number_atoms_total 2614 _refine_hist.pdbx_number_residues_total 114 _refine_hist.pdbx_B_iso_mean_ligand 59.44 _refine_hist.pdbx_B_iso_mean_solvent 47.86 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2426 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? ? ? 649 ? t_dihedral_angle_d 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? ? ? t_trig_c_planes ? ? 'X-RAY DIFFRACTION' ? ? ? 129 ? t_gen_planes 5.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 3072 ? t_it 20.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 2 ? t_nbd 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ? 'X-RAY DIFFRACTION' ? ? ? 516 ? t_chiral_improper_torsion 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 3234 ? t_ideal_dist_contact 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? 0.010 ? 3072 ? t_bond_d 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 0.850 ? 4793 ? t_angle_deg 2.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 26.460 ? ? ? t_other_torsion ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.3200 _refine_ls_shell.d_res_low 2.5400 _refine_ls_shell.number_reflns_all 2425 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 73 _refine_ls_shell.number_reflns_R_work 2352 _refine_ls_shell.percent_reflns_obs 78.3100 _refine_ls_shell.percent_reflns_R_free 3.0100 _refine_ls_shell.R_factor_all 0.2158 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2737 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2140 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5LYS _struct.title ;The crystal structure of 7SK 5'-hairpin - Gold derivative ; _struct.pdbx_descriptor 'RNA (57-MER)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5LYS _struct_keywords.text 'non-coding RNA major groove base triple transcription, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 5 ? H N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A C 56 "O3'" ? ? ? 1_555 A CCC 57 P ? ? A C 86 A CCC 87 1_555 ? ? ? ? ? ? ? 1.659 ? metalc1 metalc ? ? B G 34 OP2 ? ? ? 1_555 F NA . NA ? ? B G 64 B NA 103 1_555 ? ? ? ? ? ? ? 2.639 ? metalc2 metalc ? ? B G 34 N7 ? ? ? 1_555 E AU . AU ? ? B G 64 B AU 102 1_555 ? ? ? ? ? ? ? 2.681 ? metalc3 metalc ? ? B A 35 OP2 ? ? ? 1_555 F NA . NA ? ? B A 65 B NA 103 1_555 ? ? ? ? ? ? ? 2.645 ? covale2 covale both ? B C 56 "O3'" ? ? ? 1_555 B CCC 57 P ? ? B C 86 B CCC 87 1_555 ? ? ? ? ? ? ? 1.653 ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 225 1_555 ? ? ? ? ? ? ? 2.639 ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 255 1_555 ? ? ? ? ? ? ? 2.388 ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 301 1_555 ? ? ? ? ? ? ? 2.791 ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 291 1_555 ? ? ? ? ? ? ? 2.451 ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 293 1_555 ? ? ? ? ? ? ? 2.090 ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 300 1_555 ? ? ? ? ? ? ? 2.529 ? metalc10 metalc ? ? F NA . NA ? ? ? 1_555 H HOH . O ? ? B NA 103 B HOH 234 1_555 ? ? ? ? ? ? ? 2.793 ? metalc11 metalc ? ? F NA . NA ? ? ? 1_555 H HOH . O ? ? B NA 103 B HOH 263 1_555 ? ? ? ? ? ? ? 3.183 ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A CCC 57 N3 ? ? A G 24 A CCC 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A CCC 57 O2 ? ? A G 24 A CCC 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A CCC 57 N4 ? ? A G 24 A CCC 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 25 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 25 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 25 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 55 N3 ? ? A G 26 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 55 O2 ? ? A G 26 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 55 N4 ? ? A G 26 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 54 N3 ? ? A A 27 A U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 54 O4 ? ? A A 27 A U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 A G 53 O6 ? ? A U 28 A G 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog13 hydrog ? ? A U 5 O2 ? ? ? 1_555 A G 53 N1 ? ? A U 28 A G 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog14 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 52 N1 ? ? A C 29 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 52 O6 ? ? A C 29 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 52 N2 ? ? A C 29 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A U 7 N3 ? ? ? 1_555 A G 51 O6 ? ? A U 30 A G 81 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog18 hydrog ? ? A U 7 O2 ? ? ? 1_555 A G 51 N1 ? ? A U 30 A G 81 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog19 hydrog ? ? A G 8 N7 ? ? ? 1_555 A A 47 N6 ? ? A G 31 A A 77 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog20 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 50 N3 ? ? A G 31 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 50 O2 ? ? A G 31 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 50 N4 ? ? A G 31 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 47 N6 ? ? A U 32 A A 77 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? hydrog24 hydrog ? ? A U 9 N3 ? ? ? 1_555 A G 49 O6 ? ? A U 32 A G 79 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog25 hydrog ? ? A U 9 O2 ? ? ? 1_555 A G 49 N1 ? ? A U 32 A G 79 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog26 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 48 N1 ? ? A C 33 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 48 O6 ? ? A C 33 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 48 N2 ? ? A C 33 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A A 11 N6 ? ? ? 1_555 A G 39 N7 ? ? A A 34 A G 69 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? hydrog30 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 44 N1 A ? A C 35 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 44 N1 B ? A C 35 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 44 O6 A ? A C 35 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 44 O6 B ? A C 35 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 44 N2 A ? A C 35 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 44 N2 B ? A C 35 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 43 N1 A ? A C 36 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 43 N1 B ? A C 36 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 43 O6 A ? A C 36 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 43 O6 B ? A C 36 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 43 N2 A ? A C 36 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 43 N2 B ? A C 36 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 40 N1 A ? A C 37 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 40 N1 B ? A C 37 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 40 O6 A ? A C 37 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 40 O6 B ? A C 37 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 40 N2 A ? A C 37 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 40 N2 B ? A C 37 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 39 N1 ? ? A C 38 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 39 O6 ? ? A C 38 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog50 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 39 N2 ? ? A C 38 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog51 hydrog ? ? A A 16 N1 A ? ? 1_555 A U 38 N3 ? ? A A 39 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog52 hydrog ? ? A A 16 N1 B ? ? 1_555 A U 38 N3 ? ? A A 39 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog53 hydrog ? ? A A 16 N6 A ? ? 1_555 A U 38 O4 ? ? A A 39 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog54 hydrog ? ? A A 16 N6 B ? ? 1_555 A U 38 O4 ? ? A A 39 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog55 hydrog ? ? A U 17 N3 A ? ? 1_555 A A 20 N7 ? ? A U 40 A A 43 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? hydrog56 hydrog ? ? A U 17 O4 A ? ? 1_555 A A 20 N6 ? ? A U 40 A A 43 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? hydrog57 hydrog ? ? A G 19 O6 A ? ? 1_555 A U 33 N3 A ? A G 42 A U 63 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? hydrog58 hydrog ? ? A G 19 O6 B ? ? 1_555 A U 33 N3 B ? A G 42 A U 63 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? hydrog59 hydrog ? ? A G 19 N1 A ? ? 1_555 A C 37 N3 ? ? A G 42 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog60 hydrog ? ? A G 19 N1 B ? ? 1_555 A C 37 N3 ? ? A G 42 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog61 hydrog ? ? A G 19 N2 A ? ? 1_555 A C 37 O2 ? ? A G 42 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog62 hydrog ? ? A G 19 N2 B ? ? 1_555 A C 37 O2 ? ? A G 42 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog63 hydrog ? ? A G 19 O6 A ? ? 1_555 A C 37 N4 ? ? A G 42 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog64 hydrog ? ? A G 19 O6 B ? ? 1_555 A C 37 N4 ? ? A G 42 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog65 hydrog ? ? A A 20 N1 ? ? ? 1_555 A U 36 N3 ? ? A A 43 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog66 hydrog ? ? A A 20 N6 ? ? ? 1_555 A U 36 O4 ? ? A A 43 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog67 hydrog ? ? A U 21 N3 ? ? ? 1_555 A A 35 N1 ? ? A U 44 A A 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog68 hydrog ? ? A U 21 O4 ? ? ? 1_555 A A 35 N6 ? ? A U 44 A A 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog69 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 34 N1 A ? A C 45 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog70 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 34 N1 B ? A C 45 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog71 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 34 O6 A ? A C 45 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog72 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 34 O6 B ? A C 45 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog73 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 34 N2 A ? A C 45 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog74 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 34 N2 B ? A C 45 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog75 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 32 N3 A ? A G 46 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog76 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 32 N3 B ? A G 46 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog77 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 32 O2 A ? A G 46 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog78 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 32 O2 B ? A G 46 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog79 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 32 N4 A ? A G 46 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog80 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 32 N4 B ? A G 46 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog81 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 47 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog82 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 47 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog83 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 47 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog84 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 48 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog85 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 48 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog86 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 48 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog87 hydrog ? ? A U 26 O2 ? A ? 1_555 A G 29 N1 ? D A U 48 A G 48 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? hydrog88 hydrog ? ? A U 33 O2 A ? ? 1_555 A C 37 N4 ? ? A U 63 A C 67 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? hydrog89 hydrog ? ? A U 33 O2 B ? ? 1_555 A C 37 N4 ? ? A U 63 A C 67 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? hydrog90 hydrog ? ? A C 41 N4 A ? ? 1_555 A G 44 O6 A ? A C 71 A G 74 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? hydrog91 hydrog ? ? A C 41 N4 B ? ? 1_555 A G 44 O6 B ? A C 71 A G 74 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? hydrog92 hydrog ? ? A C 45 N4 ? ? ? 1_555 A G 48 O6 ? ? A C 75 A G 78 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? hydrog93 hydrog ? ? B G 1 N1 ? ? ? 1_555 B CCC 57 N3 ? ? B G 24 B CCC 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog94 hydrog ? ? B G 1 N2 ? ? ? 1_555 B CCC 57 O2 ? ? B G 24 B CCC 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog95 hydrog ? ? B G 1 O6 ? ? ? 1_555 B CCC 57 N4 ? ? B G 24 B CCC 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog96 hydrog ? ? B G 2 N1 A ? ? 1_555 B C 56 N3 ? ? B G 25 B C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog97 hydrog ? ? B G 2 N1 B ? ? 1_555 B C 56 N3 ? ? B G 25 B C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog98 hydrog ? ? B G 2 N2 A ? ? 1_555 B C 56 O2 ? ? B G 25 B C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog99 hydrog ? ? B G 2 N2 B ? ? 1_555 B C 56 O2 ? ? B G 25 B C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog100 hydrog ? ? B G 2 O6 A ? ? 1_555 B C 56 N4 ? ? B G 25 B C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog101 hydrog ? ? B G 2 O6 B ? ? 1_555 B C 56 N4 ? ? B G 25 B C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog102 hydrog ? ? B G 3 N1 A ? ? 1_555 B C 55 N3 ? ? B G 26 B C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog103 hydrog ? ? B G 3 N1 B ? ? 1_555 B C 55 N3 ? ? B G 26 B C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog104 hydrog ? ? B G 3 N2 A ? ? 1_555 B C 55 O2 ? ? B G 26 B C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog105 hydrog ? ? B G 3 N2 B ? ? 1_555 B C 55 O2 ? ? B G 26 B C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog106 hydrog ? ? B G 3 O6 A ? ? 1_555 B C 55 N4 ? ? B G 26 B C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog107 hydrog ? ? B G 3 O6 B ? ? 1_555 B C 55 N4 ? ? B G 26 B C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog108 hydrog ? ? B A 4 N1 A ? ? 1_555 B U 54 N3 ? ? B A 27 B U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog109 hydrog ? ? B A 4 N1 B ? ? 1_555 B U 54 N3 ? ? B A 27 B U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog110 hydrog ? ? B A 4 N6 A ? ? 1_555 B U 54 O4 ? ? B A 27 B U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog111 hydrog ? ? B A 4 N6 B ? ? 1_555 B U 54 O4 ? ? B A 27 B U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog112 hydrog ? ? B U 5 N3 ? ? ? 1_555 B G 53 O6 ? ? B U 28 B G 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog113 hydrog ? ? B U 5 O2 ? ? ? 1_555 B G 53 N1 ? ? B U 28 B G 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog114 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 52 N1 ? ? B C 29 B G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog115 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 52 O6 ? ? B C 29 B G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog116 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 52 N2 ? ? B C 29 B G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog117 hydrog ? ? B U 7 N3 ? ? ? 1_555 B G 51 O6 ? ? B U 30 B G 81 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog118 hydrog ? ? B U 7 O2 ? ? ? 1_555 B G 51 N1 ? ? B U 30 B G 81 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog119 hydrog ? ? B G 8 N7 ? ? ? 1_555 B A 47 N6 ? ? B G 31 B A 77 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog120 hydrog ? ? B G 8 N1 ? ? ? 1_555 B C 50 N3 ? ? B G 31 B C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog121 hydrog ? ? B G 8 N2 ? ? ? 1_555 B C 50 O2 ? ? B G 31 B C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog122 hydrog ? ? B G 8 O6 ? ? ? 1_555 B C 50 N4 ? ? B G 31 B C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog123 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 47 N6 ? ? B U 32 B A 77 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? hydrog124 hydrog ? ? B U 9 N3 ? ? ? 1_555 B G 49 O6 ? ? B U 32 B G 79 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog125 hydrog ? ? B U 9 O2 ? ? ? 1_555 B G 49 N1 ? ? B U 32 B G 79 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog126 hydrog ? ? B C 10 N3 ? ? ? 1_555 B G 48 N1 ? ? B C 33 B G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog127 hydrog ? ? B C 10 N4 ? ? ? 1_555 B G 48 O6 ? ? B C 33 B G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog128 hydrog ? ? B C 10 O2 ? ? ? 1_555 B G 48 N2 ? ? B C 33 B G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog129 hydrog ? ? B A 11 N6 ? ? ? 1_555 B G 39 N7 ? ? B A 34 B G 69 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? hydrog130 hydrog ? ? B C 12 N3 ? ? ? 1_555 B G 44 N1 ? ? B C 35 B G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog131 hydrog ? ? B C 12 N4 ? ? ? 1_555 B G 44 O6 ? ? B C 35 B G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog132 hydrog ? ? B C 12 O2 ? ? ? 1_555 B G 44 N2 ? ? B C 35 B G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog133 hydrog ? ? B C 13 N3 ? ? ? 1_555 B G 43 N1 ? ? B C 36 B G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog134 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 43 O6 ? ? B C 36 B G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog135 hydrog ? ? B C 13 O2 ? ? ? 1_555 B G 43 N2 ? ? B C 36 B G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog136 hydrog ? ? B C 14 N3 ? ? ? 1_555 B G 40 N1 ? ? B C 37 B G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog137 hydrog ? ? B C 14 N4 ? ? ? 1_555 B G 40 O6 ? ? B C 37 B G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog138 hydrog ? ? B C 14 O2 ? ? ? 1_555 B G 40 N2 ? ? B C 37 B G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog139 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 39 N1 ? ? B C 38 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog140 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 39 O6 ? ? B C 38 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog141 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 39 N2 ? ? B C 38 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog142 hydrog ? ? B A 16 N1 ? ? ? 1_555 B U 38 N3 ? ? B A 39 B U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog143 hydrog ? ? B A 16 N6 ? ? ? 1_555 B U 38 O4 ? ? B A 39 B U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog144 hydrog ? ? B U 17 N3 ? ? ? 1_555 B A 20 N7 ? ? B U 40 B A 43 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? hydrog145 hydrog ? ? B U 17 O4 ? ? ? 1_555 B A 20 N6 ? ? B U 40 B A 43 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? hydrog146 hydrog ? ? B G 19 O6 ? ? ? 1_555 B U 33 N3 ? ? B G 42 B U 63 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? hydrog147 hydrog ? ? B G 19 N1 ? ? ? 1_555 B C 37 N3 ? ? B G 42 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog148 hydrog ? ? B G 19 N2 ? ? ? 1_555 B C 37 O2 ? ? B G 42 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog149 hydrog ? ? B G 19 O6 ? ? ? 1_555 B C 37 N4 ? ? B G 42 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog150 hydrog ? ? B A 20 N1 ? ? ? 1_555 B U 36 N3 ? ? B A 43 B U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog151 hydrog ? ? B A 20 N6 ? ? ? 1_555 B U 36 O4 ? ? B A 43 B U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog152 hydrog ? ? B U 21 N3 ? ? ? 1_555 B A 35 N1 ? ? B U 44 B A 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog153 hydrog ? ? B U 21 O4 ? ? ? 1_555 B A 35 N6 ? ? B U 44 B A 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog154 hydrog ? ? B C 22 N3 ? ? ? 1_555 B G 34 N1 ? ? B C 45 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog155 hydrog ? ? B C 22 N4 ? ? ? 1_555 B G 34 O6 ? ? B C 45 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog156 hydrog ? ? B C 22 O2 ? ? ? 1_555 B G 34 N2 ? ? B C 45 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog157 hydrog ? ? B G 23 N1 ? ? ? 1_555 B C 32 N3 ? ? B G 46 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog158 hydrog ? ? B G 23 N2 ? ? ? 1_555 B C 32 O2 ? ? B G 46 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog159 hydrog ? ? B G 23 O6 ? ? ? 1_555 B C 32 N4 ? ? B G 46 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog160 hydrog ? ? B C 24 N3 ? ? ? 1_555 B G 31 N1 ? ? B C 47 B G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog161 hydrog ? ? B C 24 N4 ? ? ? 1_555 B G 31 O6 ? ? B C 47 B G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog162 hydrog ? ? B C 24 O2 ? ? ? 1_555 B G 31 N2 ? ? B C 47 B G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog163 hydrog ? ? B C 25 N3 ? ? ? 1_555 B G 30 N1 ? ? B C 48 B G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog164 hydrog ? ? B C 25 N4 ? ? ? 1_555 B G 30 O6 ? ? B C 48 B G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog165 hydrog ? ? B C 25 O2 ? ? ? 1_555 B G 30 N2 ? ? B C 48 B G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog166 hydrog ? ? B U 26 O2 ? A ? 1_555 B G 29 N1 ? D B U 48 B G 48 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? hydrog167 hydrog ? ? B U 33 O2 ? ? ? 1_555 B C 37 N4 ? ? B U 63 B C 67 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? hydrog168 hydrog ? ? B C 41 N4 ? ? ? 1_555 B G 44 O6 ? ? B C 71 B G 74 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? hydrog169 hydrog ? ? B C 45 N4 ? ? ? 1_555 B G 48 O6 ? ? B C 75 B G 78 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A AU 101 ? 4 'binding site for residue AU A 101' AC2 Software B MG 101 ? 6 'binding site for residue MG B 101' AC3 Software B AU 102 ? 4 'binding site for residue AU B 102' AC4 Software B NA 103 ? 4 'binding site for residue NA B 103' AC5 Software B C 86 ? 8 'binding site for Di-nucleotide C B 86 and CCC B 87' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 U A 17 ? U A 40 . ? 1_555 ? 2 AC1 4 C A 32 ? C A 62 . ? 1_555 ? 3 AC1 4 U A 33 ? U A 63 . ? 1_555 ? 4 AC1 4 G A 34 ? G A 64 . ? 1_555 ? 5 AC2 6 HOH H . ? HOH B 225 . ? 1_555 ? 6 AC2 6 HOH H . ? HOH B 255 . ? 1_555 ? 7 AC2 6 HOH H . ? HOH B 291 . ? 1_555 ? 8 AC2 6 HOH H . ? HOH B 293 . ? 1_555 ? 9 AC2 6 HOH H . ? HOH B 300 . ? 1_555 ? 10 AC2 6 HOH H . ? HOH B 301 . ? 1_555 ? 11 AC3 4 C B 32 ? C B 62 . ? 1_555 ? 12 AC3 4 U B 33 ? U B 63 . ? 1_555 ? 13 AC3 4 G B 34 ? G B 64 . ? 1_555 ? 14 AC3 4 HOH H . ? HOH B 296 . ? 1_555 ? 15 AC4 4 U B 33 ? U B 63 . ? 1_555 ? 16 AC4 4 G B 34 ? G B 64 . ? 1_555 ? 17 AC4 4 A B 35 ? A B 65 . ? 1_555 ? 18 AC4 4 HOH H . ? HOH B 234 . ? 1_555 ? 19 AC5 8 G A 1 ? G A 24 . ? 1_556 ? 20 AC5 8 U A 27 B U A 48 . ? 1_455 ? 21 AC5 8 G B 1 ? G B 24 . ? 1_555 ? 22 AC5 8 G B 2 ? G B 25 . ? 1_555 ? 23 AC5 8 G B 3 ? G B 26 . ? 1_555 ? 24 AC5 8 C B 55 ? C B 85 . ? 1_555 ? 25 AC5 8 HOH H . ? HOH B 210 . ? 1_556 ? 26 AC5 8 HOH H . ? HOH B 214 . ? 1_555 ? # _atom_sites.entry_id 5LYS _atom_sites.fract_transf_matrix[1][1] 0.021133 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005877 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020907 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014993 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol AU C MG N NA O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 24 24 G G A . n A 1 2 G 2 25 25 G G A . n A 1 3 G 3 26 26 G G A . n A 1 4 A 4 27 27 A A A . n A 1 5 U 5 28 28 U U A . n A 1 6 C 6 29 29 C C A . n A 1 7 U 7 30 30 U U A . n A 1 8 G 8 31 31 G G A . n A 1 9 U 9 32 32 U U A . n A 1 10 C 10 33 33 C C A . n A 1 11 A 11 34 34 A A A . n A 1 12 C 12 35 35 C C A . n A 1 13 C 13 36 36 C C A . n A 1 14 C 14 37 37 C C A . n A 1 15 C 15 38 38 C C A . n A 1 16 A 16 39 39 A A A . n A 1 17 U 17 40 40 U U A . n A 1 18 U 18 41 41 U U A . n A 1 19 G 19 42 42 G G A . n A 1 20 A 20 43 43 A A A . n A 1 21 U 21 44 44 U U A . n A 1 22 C 22 45 45 C C A . n A 1 23 G 23 46 46 G G A . n A 1 24 C 24 47 47 C C A . n A 1 25 C 25 48 48 C C A . n A 1 26 U 26 48 48 U U A A n A 1 27 U 27 48 48 U U A B n A 1 28 C 28 48 48 C C A C n A 1 29 G 29 48 48 G G A D n A 1 30 G 30 60 60 G G A . n A 1 31 G 31 61 61 G G A . n A 1 32 C 32 62 62 C C A . n A 1 33 U 33 63 63 U U A . n A 1 34 G 34 64 64 G G A . n A 1 35 A 35 65 65 A A A . n A 1 36 U 36 66 66 U U A . n A 1 37 C 37 67 67 C C A . n A 1 38 U 38 68 68 U U A . n A 1 39 G 39 69 69 G G A . n A 1 40 G 40 70 70 G G A . n A 1 41 C 41 71 71 C C A . n A 1 42 U 42 72 72 U U A . n A 1 43 G 43 73 73 G G A . n A 1 44 G 44 74 74 G G A . n A 1 45 C 45 75 75 C C A . n A 1 46 U 46 76 76 U U A . n A 1 47 A 47 77 77 A A A . n A 1 48 G 48 78 78 G G A . n A 1 49 G 49 79 79 G G A . n A 1 50 C 50 80 80 C C A . n A 1 51 G 51 81 81 G G A . n A 1 52 G 52 82 82 G G A . n A 1 53 G 53 83 83 G G A . n A 1 54 U 54 84 84 U U A . n A 1 55 C 55 85 85 C C A . n A 1 56 C 56 86 86 C C A . n A 1 57 CCC 57 87 87 CCC CCC A . n B 1 1 G 1 24 24 G G B . n B 1 2 G 2 25 25 G G B . n B 1 3 G 3 26 26 G G B . n B 1 4 A 4 27 27 A A B . n B 1 5 U 5 28 28 U U B . n B 1 6 C 6 29 29 C C B . n B 1 7 U 7 30 30 U U B . n B 1 8 G 8 31 31 G G B . n B 1 9 U 9 32 32 U U B . n B 1 10 C 10 33 33 C C B . n B 1 11 A 11 34 34 A A B . n B 1 12 C 12 35 35 C C B . n B 1 13 C 13 36 36 C C B . n B 1 14 C 14 37 37 C C B . n B 1 15 C 15 38 38 C C B . n B 1 16 A 16 39 39 A A B . n B 1 17 U 17 40 40 U U B . n B 1 18 U 18 41 41 U U B . n B 1 19 G 19 42 42 G G B . n B 1 20 A 20 43 43 A A B . n B 1 21 U 21 44 44 U U B . n B 1 22 C 22 45 45 C C B . n B 1 23 G 23 46 46 G G B . n B 1 24 C 24 47 47 C C B . n B 1 25 C 25 48 48 C C B . n B 1 26 U 26 48 48 U U B A n B 1 27 U 27 48 48 U U B B n B 1 28 C 28 48 48 C C B C n B 1 29 G 29 48 48 G G B D n B 1 30 G 30 60 60 G G B . n B 1 31 G 31 61 61 G G B . n B 1 32 C 32 62 62 C C B . n B 1 33 U 33 63 63 U U B . n B 1 34 G 34 64 64 G G B . n B 1 35 A 35 65 65 A A B . n B 1 36 U 36 66 66 U U B . n B 1 37 C 37 67 67 C C B . n B 1 38 U 38 68 68 U U B . n B 1 39 G 39 69 69 G G B . n B 1 40 G 40 70 70 G G B . n B 1 41 C 41 71 71 C C B . n B 1 42 U 42 72 72 U U B . n B 1 43 G 43 73 73 G G B . n B 1 44 G 44 74 74 G G B . n B 1 45 C 45 75 75 C C B . n B 1 46 U 46 76 76 U U B . n B 1 47 A 47 77 77 A A B . n B 1 48 G 48 78 78 G G B . n B 1 49 G 49 79 79 G G B . n B 1 50 C 50 80 80 C C B . n B 1 51 G 51 81 81 G G B . n B 1 52 G 52 82 82 G G B . n B 1 53 G 53 83 83 G G B . n B 1 54 U 54 84 84 U U B . n B 1 55 C 55 85 85 C C B . n B 1 56 C 56 86 86 C C B . n B 1 57 CCC 57 87 87 CCC CCC B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AU 1 101 2 AU AU A . D 3 MG 1 101 2 MG MG B . E 2 AU 1 102 1 AU AU B . F 4 NA 1 103 2 NA NA B . G 5 HOH 1 201 20 HOH HOH A . G 5 HOH 2 202 58 HOH HOH A . G 5 HOH 3 203 63 HOH HOH A . G 5 HOH 4 204 91 HOH HOH A . G 5 HOH 5 205 127 HOH HOH A . G 5 HOH 6 206 37 HOH HOH A . G 5 HOH 7 207 71 HOH HOH A . G 5 HOH 8 208 19 HOH HOH A . G 5 HOH 9 209 6 HOH HOH A . G 5 HOH 10 210 62 HOH HOH A . G 5 HOH 11 211 68 HOH HOH A . G 5 HOH 12 212 135 HOH HOH A . G 5 HOH 13 213 101 HOH HOH A . G 5 HOH 14 214 116 HOH HOH A . G 5 HOH 15 215 82 HOH HOH A . G 5 HOH 16 216 41 HOH HOH A . G 5 HOH 17 217 119 HOH HOH A . G 5 HOH 18 218 52 HOH HOH A . G 5 HOH 19 219 168 HOH HOH A . G 5 HOH 20 220 111 HOH HOH A . G 5 HOH 21 221 171 HOH HOH A . G 5 HOH 22 222 164 HOH HOH A . G 5 HOH 23 223 180 HOH HOH A . G 5 HOH 24 224 177 HOH HOH A . G 5 HOH 25 225 146 HOH HOH A . G 5 HOH 26 226 110 HOH HOH A . G 5 HOH 27 227 28 HOH HOH A . G 5 HOH 28 228 80 HOH HOH A . G 5 HOH 29 229 92 HOH HOH A . G 5 HOH 30 230 54 HOH HOH A . G 5 HOH 31 231 124 HOH HOH A . G 5 HOH 32 232 31 HOH HOH A . G 5 HOH 33 233 9 HOH HOH A . G 5 HOH 34 234 16 HOH HOH A . G 5 HOH 35 235 7 HOH HOH A . G 5 HOH 36 236 39 HOH HOH A . G 5 HOH 37 237 175 HOH HOH A . G 5 HOH 38 238 161 HOH HOH A . G 5 HOH 39 239 56 HOH HOH A . G 5 HOH 40 240 178 HOH HOH A . G 5 HOH 41 241 162 HOH HOH A . G 5 HOH 42 242 141 HOH HOH A . G 5 HOH 43 243 102 HOH HOH A . G 5 HOH 44 244 57 HOH HOH A . G 5 HOH 45 245 179 HOH HOH A . G 5 HOH 46 246 47 HOH HOH A . G 5 HOH 47 247 10 HOH HOH A . G 5 HOH 48 248 49 HOH HOH A . G 5 HOH 49 249 122 HOH HOH A . G 5 HOH 50 250 17 HOH HOH A . G 5 HOH 51 251 75 HOH HOH A . G 5 HOH 52 252 38 HOH HOH A . G 5 HOH 53 253 109 HOH HOH A . G 5 HOH 54 254 169 HOH HOH A . G 5 HOH 55 255 99 HOH HOH A . G 5 HOH 56 256 174 HOH HOH A . G 5 HOH 57 257 44 HOH HOH A . G 5 HOH 58 258 159 HOH HOH A . G 5 HOH 59 259 15 HOH HOH A . G 5 HOH 60 260 97 HOH HOH A . G 5 HOH 61 261 94 HOH HOH A . G 5 HOH 62 262 50 HOH HOH A . G 5 HOH 63 263 123 HOH HOH A . G 5 HOH 64 264 45 HOH HOH A . G 5 HOH 65 265 167 HOH HOH A . G 5 HOH 66 266 117 HOH HOH A . G 5 HOH 67 267 108 HOH HOH A . G 5 HOH 68 268 13 HOH HOH A . G 5 HOH 69 269 121 HOH HOH A . G 5 HOH 70 270 53 HOH HOH A . G 5 HOH 71 271 144 HOH HOH A . G 5 HOH 72 272 165 HOH HOH A . G 5 HOH 73 273 160 HOH HOH A . G 5 HOH 74 274 118 HOH HOH A . G 5 HOH 75 275 150 HOH HOH A . G 5 HOH 76 276 103 HOH HOH A . G 5 HOH 77 277 148 HOH HOH A . G 5 HOH 78 278 147 HOH HOH A . G 5 HOH 79 279 131 HOH HOH A . G 5 HOH 80 280 142 HOH HOH A . G 5 HOH 81 281 130 HOH HOH A . G 5 HOH 82 282 98 HOH HOH A . G 5 HOH 83 283 163 HOH HOH A . H 5 HOH 1 201 93 HOH HOH B . H 5 HOH 2 202 5 HOH HOH B . H 5 HOH 3 203 126 HOH HOH B . H 5 HOH 4 204 84 HOH HOH B . H 5 HOH 5 205 67 HOH HOH B . H 5 HOH 6 206 73 HOH HOH B . H 5 HOH 7 207 35 HOH HOH B . H 5 HOH 8 208 40 HOH HOH B . H 5 HOH 9 209 81 HOH HOH B . H 5 HOH 10 210 113 HOH HOH B . H 5 HOH 11 211 90 HOH HOH B . H 5 HOH 12 212 29 HOH HOH B . H 5 HOH 13 213 26 HOH HOH B . H 5 HOH 14 214 115 HOH HOH B . H 5 HOH 15 215 85 HOH HOH B . H 5 HOH 16 216 30 HOH HOH B . H 5 HOH 17 217 129 HOH HOH B . H 5 HOH 18 218 104 HOH HOH B . H 5 HOH 19 219 125 HOH HOH B . H 5 HOH 20 220 76 HOH HOH B . H 5 HOH 21 221 4 HOH HOH B . H 5 HOH 22 222 89 HOH HOH B . H 5 HOH 23 223 70 HOH HOH B . H 5 HOH 24 224 27 HOH HOH B . H 5 HOH 25 225 157 HOH HOH B . H 5 HOH 26 226 176 HOH HOH B . H 5 HOH 27 227 166 HOH HOH B . H 5 HOH 28 228 43 HOH HOH B . H 5 HOH 29 229 170 HOH HOH B . H 5 HOH 30 230 107 HOH HOH B . H 5 HOH 31 231 79 HOH HOH B . H 5 HOH 32 232 105 HOH HOH B . H 5 HOH 33 233 120 HOH HOH B . H 5 HOH 34 234 78 HOH HOH B . H 5 HOH 35 235 33 HOH HOH B . H 5 HOH 36 236 65 HOH HOH B . H 5 HOH 37 237 8 HOH HOH B . H 5 HOH 38 238 2 HOH HOH B . H 5 HOH 39 239 48 HOH HOH B . H 5 HOH 40 240 34 HOH HOH B . H 5 HOH 41 241 158 HOH HOH B . H 5 HOH 42 242 3 HOH HOH B . H 5 HOH 43 243 42 HOH HOH B . H 5 HOH 44 244 95 HOH HOH B . H 5 HOH 45 245 69 HOH HOH B . H 5 HOH 46 246 14 HOH HOH B . H 5 HOH 47 247 83 HOH HOH B . H 5 HOH 48 248 96 HOH HOH B . H 5 HOH 49 249 86 HOH HOH B . H 5 HOH 50 250 46 HOH HOH B . H 5 HOH 51 251 1 HOH HOH B . H 5 HOH 52 252 181 HOH HOH B . H 5 HOH 53 253 149 HOH HOH B . H 5 HOH 54 254 25 HOH HOH B . H 5 HOH 55 255 154 HOH HOH B . H 5 HOH 56 256 18 HOH HOH B . H 5 HOH 57 257 12 HOH HOH B . H 5 HOH 58 258 59 HOH HOH B . H 5 HOH 59 259 66 HOH HOH B . H 5 HOH 60 260 61 HOH HOH B . H 5 HOH 61 261 21 HOH HOH B . H 5 HOH 62 262 24 HOH HOH B . H 5 HOH 63 263 134 HOH HOH B . H 5 HOH 64 264 23 HOH HOH B . H 5 HOH 65 265 64 HOH HOH B . H 5 HOH 66 266 72 HOH HOH B . H 5 HOH 67 267 88 HOH HOH B . H 5 HOH 68 268 55 HOH HOH B . H 5 HOH 69 269 60 HOH HOH B . H 5 HOH 70 270 151 HOH HOH B . H 5 HOH 71 271 182 HOH HOH B . H 5 HOH 72 272 138 HOH HOH B . H 5 HOH 73 273 36 HOH HOH B . H 5 HOH 74 274 22 HOH HOH B . H 5 HOH 75 275 172 HOH HOH B . H 5 HOH 76 276 133 HOH HOH B . H 5 HOH 77 277 106 HOH HOH B . H 5 HOH 78 278 137 HOH HOH B . H 5 HOH 79 279 143 HOH HOH B . H 5 HOH 80 280 32 HOH HOH B . H 5 HOH 81 281 145 HOH HOH B . H 5 HOH 82 282 112 HOH HOH B . H 5 HOH 83 283 51 HOH HOH B . H 5 HOH 84 284 11 HOH HOH B . H 5 HOH 85 285 173 HOH HOH B . H 5 HOH 86 286 87 HOH HOH B . H 5 HOH 87 287 140 HOH HOH B . H 5 HOH 88 288 184 HOH HOH B . H 5 HOH 89 289 77 HOH HOH B . H 5 HOH 90 290 132 HOH HOH B . H 5 HOH 91 291 153 HOH HOH B . H 5 HOH 92 292 100 HOH HOH B . H 5 HOH 93 293 155 HOH HOH B . H 5 HOH 94 294 74 HOH HOH B . H 5 HOH 95 295 114 HOH HOH B . H 5 HOH 96 296 128 HOH HOH B . H 5 HOH 97 297 183 HOH HOH B . H 5 HOH 98 298 139 HOH HOH B . H 5 HOH 99 299 136 HOH HOH B . H 5 HOH 100 300 152 HOH HOH B . H 5 HOH 101 301 156 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,G 2 1 B,D,E,F,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? B G 34 ? B G 64 ? 1_555 NA ? F NA . ? B NA 103 ? 1_555 OP2 ? B A 35 ? B A 65 ? 1_555 70.4 ? 2 OP2 ? B G 34 ? B G 64 ? 1_555 NA ? F NA . ? B NA 103 ? 1_555 O ? H HOH . ? B HOH 234 ? 1_555 94.5 ? 3 OP2 ? B A 35 ? B A 65 ? 1_555 NA ? F NA . ? B NA 103 ? 1_555 O ? H HOH . ? B HOH 234 ? 1_555 91.4 ? 4 OP2 ? B G 34 ? B G 64 ? 1_555 NA ? F NA . ? B NA 103 ? 1_555 O ? H HOH . ? B HOH 263 ? 1_555 141.4 ? 5 OP2 ? B A 35 ? B A 65 ? 1_555 NA ? F NA . ? B NA 103 ? 1_555 O ? H HOH . ? B HOH 263 ? 1_555 140.2 ? 6 O ? H HOH . ? B HOH 234 ? 1_555 NA ? F NA . ? B NA 103 ? 1_555 O ? H HOH . ? B HOH 263 ? 1_555 105.0 ? 7 O ? H HOH . ? B HOH 225 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 255 ? 1_555 92.3 ? 8 O ? H HOH . ? B HOH 225 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 301 ? 1_555 91.2 ? 9 O ? H HOH . ? B HOH 255 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 301 ? 1_555 138.4 ? 10 O ? H HOH . ? B HOH 225 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 291 ? 1_555 82.7 ? 11 O ? H HOH . ? B HOH 255 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 291 ? 1_555 146.5 ? 12 O ? H HOH . ? B HOH 301 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 291 ? 1_555 75.0 ? 13 O ? H HOH . ? B HOH 225 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 293 ? 1_555 69.4 ? 14 O ? H HOH . ? B HOH 255 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 293 ? 1_555 73.7 ? 15 O ? H HOH . ? B HOH 301 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 293 ? 1_555 144.8 ? 16 O ? H HOH . ? B HOH 291 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 293 ? 1_555 73.6 ? 17 O ? H HOH . ? B HOH 225 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 300 ? 1_555 138.9 ? 18 O ? H HOH . ? B HOH 255 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 300 ? 1_555 84.9 ? 19 O ? H HOH . ? B HOH 301 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 300 ? 1_555 117.5 ? 20 O ? H HOH . ? B HOH 291 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 300 ? 1_555 77.8 ? 21 O ? H HOH . ? B HOH 293 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 300 ? 1_555 70.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-01-25 2 'Structure model' 1 1 2017-05-03 3 'Structure model' 1 2 2017-08-30 4 'Structure model' 1 3 2018-04-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_audit_support 2 3 'Structure model' struct_conn 3 4 'Structure model' entity # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_audit_support.funding_organization' 2 4 'Structure model' '_entity.pdbx_description' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 7.0227 0.5331 33.6236 -0.2835 -0.1890 -0.1142 -0.0354 -0.0320 0.0451 2.7849 2.3966 6.0813 -0.0993 0.1603 -1.0928 0.1461 -0.1051 -0.0410 0.0495 0.0362 -0.3994 0.0209 -0.0599 0.5787 'X-RAY DIFFRACTION' 2 ? refined -17.7189 -0.2760 34.4312 -0.2431 -0.2154 -0.1903 -0.0227 -0.0436 0.0095 3.2522 2.5444 3.0984 -0.3761 -0.9732 -0.2737 0.0676 0.0658 -0.1335 -0.1760 -0.3144 0.2066 0.0335 0.1551 -0.1523 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 24 A 87 '{ A|24 - A|87 }' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 24 B 87 '{ B|24 - B|87 }' ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER-TNT ? ? ? 2.10.2 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.20 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A G 24 ? ? OP3 A G 24 ? ? 1.490 1.607 -0.117 0.012 N 2 1 P B G 24 ? ? OP3 B G 24 ? ? 1.485 1.607 -0.122 0.012 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OP1 A G 24 ? ? P A G 24 ? ? OP2 A G 24 ? ? 109.72 119.60 -9.88 1.50 N 2 1 "O3'" A C 86 ? ? P A CCC 87 ? ? "O5'" A CCC 87 ? ? 91.68 104.00 -12.32 1.90 Y 3 1 "O3'" A C 86 ? ? P A CCC 87 ? ? OP2 A CCC 87 ? ? 118.75 110.50 8.25 1.10 Y 4 1 OP1 B G 24 ? ? P B G 24 ? ? OP2 B G 24 ? ? 109.68 119.60 -9.92 1.50 N 5 1 "C3'" B C 86 ? ? "O3'" B C 86 ? ? P B CCC 87 ? ? 110.41 119.70 -9.29 1.20 Y 6 1 "O3'" B C 86 ? ? P B CCC 87 ? ? OP2 B CCC 87 ? ? 121.41 110.50 10.91 1.10 Y # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5LYS 'double helix' 5LYS 'a-form double helix' 5LYS tetraloop 5LYS 'bulge loop' 5LYS 'mismatched base pair' 5LYS 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A CCC 57 1_555 -0.486 -0.036 -0.080 -1.588 -15.444 -6.419 1 A_G24:CCC87_A A 24 ? A 87 ? 19 1 1 A G 2 1_555 A C 56 1_555 -0.770 -0.258 -0.094 -0.974 -14.641 -1.549 2 A_G25:C86_A A 25 ? A 86 ? 19 1 1 A G 3 1_555 A C 55 1_555 -0.346 -0.129 -0.040 -16.397 -17.803 -1.973 3 A_G26:C85_A A 26 ? A 85 ? 19 1 1 A A 4 1_555 A U 54 1_555 0.107 -0.071 -0.068 -11.026 -17.984 4.750 4 A_A27:U84_A A 27 ? A 84 ? 20 1 1 A U 5 1_555 A G 53 1_555 1.950 -0.380 0.314 -3.681 -11.548 3.970 5 A_U28:G83_A A 28 ? A 83 ? 28 1 1 A C 6 1_555 A G 52 1_555 0.596 -0.167 0.065 -0.239 -13.704 -0.741 6 A_C29:G82_A A 29 ? A 82 ? 19 1 1 A U 7 1_555 A G 51 1_555 2.163 -0.470 0.159 -0.640 -9.913 0.490 7 A_U30:G81_A A 30 ? A 81 ? 28 1 1 A G 8 1_555 A C 50 1_555 -0.725 -0.373 0.191 -5.179 -13.868 -2.570 8 A_G31:C80_A A 31 ? A 80 ? 19 1 1 A U 9 1_555 A G 49 1_555 2.333 -0.607 0.266 1.699 -16.536 -1.460 9 A_U32:G79_A A 32 ? A 79 ? 28 1 1 A C 10 1_555 A G 48 1_555 0.220 -0.132 0.062 5.943 -10.158 -0.483 10 A_C33:G78_A A 33 ? A 78 ? 19 1 1 A C 12 1_555 A G 44 1_555 0.282 -0.104 0.181 13.712 -5.809 -0.111 11 A_C35:G74_A A 35 ? A 74 ? 19 1 1 A C 13 1_555 A G 43 1_555 0.116 0.089 -0.165 24.452 -5.645 5.052 12 A_C36:G73_A A 36 ? A 73 ? 19 1 1 A C 14 1_555 A G 40 1_555 0.328 -0.231 -0.485 9.308 -11.931 1.195 13 A_C37:G70_A A 37 ? A 70 ? 19 1 1 A C 15 1_555 A G 39 1_555 0.330 -0.259 0.144 0.126 -11.412 -1.552 14 A_C38:G69_A A 38 ? A 69 ? 19 1 1 A A 16 1_555 A U 38 1_555 0.078 -0.108 -0.006 -3.489 -16.776 4.532 15 A_A39:U68_A A 39 ? A 68 ? 20 1 1 A G 19 1_555 A C 37 1_555 -0.238 0.044 -0.101 -12.957 -7.682 3.429 16 A_G42:C67_A A 42 ? A 67 ? 19 1 1 A A 20 1_555 A U 36 1_555 -0.282 -0.091 -0.167 -2.821 -9.772 1.672 17 A_A43:U66_A A 43 ? A 66 ? 20 1 1 A U 21 1_555 A A 35 1_555 0.161 -0.103 -0.305 9.585 -10.556 4.099 18 A_U44:A65_A A 44 ? A 65 ? 20 1 1 A C 22 1_555 A G 34 1_555 0.876 0.127 -0.250 9.389 -8.973 5.802 19 A_C45:G64_A A 45 ? A 64 ? 19 1 1 A G 23 1_555 A C 32 1_555 -1.612 -0.419 0.010 3.993 -3.180 6.102 20 A_G46:C62_A A 46 ? A 62 ? 19 1 1 A C 24 1_555 A G 31 1_555 0.408 -0.187 -0.071 8.446 -9.529 1.346 21 A_C47:G61_A A 47 ? A 61 ? 19 1 1 A C 25 1_555 A G 30 1_555 0.415 -0.110 -0.334 5.500 -4.478 2.085 22 A_C48:G60_A A 48 ? A 60 ? 19 1 1 A U 26 1_555 A G 29 1_555 0.893 -5.226 -0.167 -3.961 -11.420 -108.735 23 A_U48A:G48D_A A 48 A A 48 D ? 6 1 B G 1 1_555 B CCC 57 1_555 -0.109 -0.176 0.025 -0.099 -12.215 -4.665 24 B_G24:CCC87_B B 24 ? B 87 ? 19 1 1 B G 2 1_555 B C 56 1_555 -0.903 -0.184 0.015 -5.206 -11.695 1.597 25 B_G25:C86_B B 25 ? B 86 ? 19 1 1 B G 3 1_555 B C 55 1_555 -0.706 -0.380 -0.067 -12.342 -15.353 -2.152 26 B_G26:C85_B B 26 ? B 85 ? 19 1 1 B A 4 1_555 B U 54 1_555 -0.458 -0.172 -0.152 -11.739 -14.862 2.602 27 B_A27:U84_B B 27 ? B 84 ? 20 1 1 B U 5 1_555 B G 53 1_555 1.953 -0.354 0.283 -3.349 -10.822 4.831 28 B_U28:G83_B B 28 ? B 83 ? 28 1 1 B C 6 1_555 B G 52 1_555 0.607 -0.141 0.055 -0.151 -13.240 0.221 29 B_C29:G82_B B 29 ? B 82 ? 19 1 1 B U 7 1_555 B G 51 1_555 2.169 -0.458 0.111 -0.027 -8.627 1.063 30 B_U30:G81_B B 30 ? B 81 ? 28 1 1 B G 8 1_555 B C 50 1_555 -0.718 -0.375 0.167 -5.256 -13.686 -2.163 31 B_G31:C80_B B 31 ? B 80 ? 19 1 1 B U 9 1_555 B G 49 1_555 2.355 -0.635 0.288 1.489 -17.074 -0.767 32 B_U32:G79_B B 32 ? B 79 ? 28 1 1 B C 10 1_555 B G 48 1_555 0.205 -0.145 0.103 5.543 -10.156 -0.502 33 B_C33:G78_B B 33 ? B 78 ? 19 1 1 B C 12 1_555 B G 44 1_555 0.363 0.146 -0.099 12.700 -2.152 -0.714 34 B_C35:G74_B B 35 ? B 74 ? 19 1 1 B C 13 1_555 B G 43 1_555 0.287 -0.152 -0.299 20.016 -7.098 0.828 35 B_C36:G73_B B 36 ? B 73 ? 19 1 1 B C 14 1_555 B G 40 1_555 0.309 -0.140 -0.228 13.099 -15.194 1.476 36 B_C37:G70_B B 37 ? B 70 ? 19 1 1 B C 15 1_555 B G 39 1_555 0.309 -0.282 0.203 2.699 -14.907 -1.881 37 B_C38:G69_B B 38 ? B 69 ? 19 1 1 B A 16 1_555 B U 38 1_555 -0.199 -0.112 0.026 -5.270 -18.283 2.558 38 B_A39:U68_B B 39 ? B 68 ? 20 1 1 B G 19 1_555 B C 37 1_555 -0.453 -0.153 -0.187 -12.694 -8.035 0.864 39 B_G42:C67_B B 42 ? B 67 ? 19 1 1 B A 20 1_555 B U 36 1_555 -0.258 -0.080 -0.157 -2.393 -10.093 1.256 40 B_A43:U66_B B 43 ? B 66 ? 20 1 1 B U 21 1_555 B A 35 1_555 0.157 -0.115 -0.297 9.435 -11.400 3.537 41 B_U44:A65_B B 44 ? B 65 ? 20 1 1 B C 22 1_555 B G 34 1_555 0.679 -0.111 -0.140 7.343 -10.748 1.612 42 B_C45:G64_B B 45 ? B 64 ? 19 1 1 B G 23 1_555 B C 32 1_555 -1.983 -0.480 0.012 8.812 -1.792 3.508 43 B_G46:C62_B B 46 ? B 62 ? 19 1 1 B C 24 1_555 B G 31 1_555 0.672 -0.180 -0.104 10.361 -11.546 2.545 44 B_C47:G61_B B 47 ? B 61 ? 19 1 1 B C 25 1_555 B G 30 1_555 0.874 -0.314 -0.309 7.068 -4.353 1.459 45 B_C48:G60_B B 48 ? B 60 ? 19 1 1 B U 26 1_555 B G 29 1_555 1.278 -4.916 -0.220 -5.263 -10.844 -102.182 46 B_U48A:G48D_B B 48 A B 48 D ? 6 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A CCC 57 1_555 A G 2 1_555 A C 56 1_555 -0.047 -1.687 3.091 -2.750 11.541 33.304 -4.258 -0.275 2.389 19.388 4.619 35.297 1 AA_G24G25:C86CCC87_AA A 24 ? A 87 ? A 25 ? A 86 ? 1 A G 2 1_555 A C 56 1_555 A G 3 1_555 A C 55 1_555 0.607 -1.983 3.572 2.254 9.821 32.228 -5.033 -0.676 2.895 17.175 -3.941 33.727 2 AA_G25G26:C85C86_AA A 25 ? A 86 ? A 26 ? A 85 ? 1 A G 3 1_555 A C 55 1_555 A A 4 1_555 A U 54 1_555 0.125 -1.413 3.097 2.572 6.751 33.414 -3.374 0.157 2.768 11.574 -4.409 34.164 3 AA_G26A27:U84C85_AA A 26 ? A 85 ? A 27 ? A 84 ? 1 A A 4 1_555 A U 54 1_555 A U 5 1_555 A G 53 1_555 0.386 -1.009 3.028 -1.385 4.604 39.037 -1.995 -0.723 2.880 6.859 2.063 39.321 4 AA_A27U28:G83U84_AA A 27 ? A 84 ? A 28 ? A 83 ? 1 A U 5 1_555 A G 53 1_555 A C 6 1_555 A G 52 1_555 -0.142 -2.070 3.025 4.887 3.676 25.116 -5.525 1.510 2.626 8.298 -11.030 25.839 5 AA_U28C29:G82G83_AA A 28 ? A 83 ? A 29 ? A 82 ? 1 A C 6 1_555 A G 52 1_555 A U 7 1_555 A G 51 1_555 0.223 -1.684 3.305 0.649 3.745 35.638 -3.266 -0.271 3.121 6.097 -1.057 35.833 6 AA_C29U30:G81G82_AA A 29 ? A 82 ? A 30 ? A 81 ? 1 A U 7 1_555 A G 51 1_555 A G 8 1_555 A C 50 1_555 -1.109 -1.812 3.037 -0.807 11.743 22.898 -6.729 2.309 1.928 27.379 1.882 25.710 7 AA_U30G31:C80G81_AA A 30 ? A 81 ? A 31 ? A 80 ? 1 A G 8 1_555 A C 50 1_555 A U 9 1_555 A G 49 1_555 0.217 -1.015 3.110 0.695 5.193 44.375 -1.780 -0.227 2.982 6.847 -0.916 44.667 8 AA_G31U32:G79C80_AA A 31 ? A 80 ? A 32 ? A 79 ? 1 A U 9 1_555 A G 49 1_555 A C 10 1_555 A G 48 1_555 0.361 -1.818 2.901 4.782 5.337 28.645 -4.532 0.153 2.553 10.579 -9.478 29.509 9 AA_U32C33:G78G79_AA A 32 ? A 79 ? A 33 ? A 78 ? 1 A C 10 1_555 A G 48 1_555 A C 12 1_555 A G 44 1_555 2.462 -0.587 3.006 2.710 -0.788 88.855 -0.404 -1.706 3.069 -0.563 -1.935 88.890 10 AA_C33C35:G74G78_AA A 33 ? A 78 ? A 35 ? A 74 ? 1 A C 12 1_555 A G 44 1_555 A C 13 1_555 A G 43 1_555 0.769 -2.509 3.327 -6.913 -0.678 32.576 -4.267 -2.497 3.152 -1.192 12.151 33.289 11 AA_C35C36:G73G74_AA A 35 ? A 74 ? A 36 ? A 73 ? 1 A C 13 1_555 A G 43 1_555 A C 14 1_555 A G 40 1_555 1.136 -1.554 3.507 3.709 7.228 46.255 -2.579 -1.105 3.318 9.118 -4.678 46.924 12 AA_C36C37:G70G73_AA A 36 ? A 73 ? A 37 ? A 70 ? 1 A C 14 1_555 A G 40 1_555 A C 15 1_555 A G 39 1_555 -0.465 -1.960 3.479 -5.391 11.622 30.761 -5.312 -0.064 2.629 20.812 9.654 33.263 13 AA_C37C38:G69G70_AA A 37 ? A 70 ? A 38 ? A 69 ? 1 A C 15 1_555 A G 39 1_555 A A 16 1_555 A U 38 1_555 0.139 -1.416 3.280 4.614 11.691 32.636 -4.017 0.422 2.629 19.909 -7.857 34.911 14 AA_C38A39:U68G69_AA A 38 ? A 69 ? A 39 ? A 68 ? 1 A A 16 1_555 A U 38 1_555 A G 19 1_555 A C 37 1_555 -1.924 -1.123 3.162 -5.989 7.074 49.318 -1.824 1.848 3.181 8.392 7.104 50.128 15 AA_A39G42:C67U68_AA A 39 ? A 68 ? A 42 ? A 67 ? 1 A G 19 1_555 A C 37 1_555 A A 20 1_555 A U 36 1_555 -1.308 -2.375 2.940 -1.046 7.010 23.895 -7.199 2.780 2.217 16.472 2.458 24.909 16 AA_G42A43:U66C67_AA A 42 ? A 67 ? A 43 ? A 66 ? 1 A A 20 1_555 A U 36 1_555 A U 21 1_555 A A 35 1_555 0.174 -0.718 2.943 1.149 6.369 32.519 -2.202 -0.135 2.761 11.235 -2.027 33.140 17 AA_A43U44:A65U66_AA A 43 ? A 66 ? A 44 ? A 65 ? 1 A U 21 1_555 A A 35 1_555 A C 22 1_555 A G 34 1_555 0.723 -1.704 3.305 -0.195 4.150 34.973 -3.421 -1.223 3.085 6.875 0.322 35.211 18 AA_U44C45:G64A65_AA A 44 ? A 65 ? A 45 ? A 64 ? 1 A C 22 1_555 A G 34 1_555 A G 23 1_555 A C 32 1_555 2.439 -1.563 3.270 -1.259 5.033 36.484 -3.126 -4.023 2.953 7.990 1.998 36.839 19 AA_C45G46:C62G64_AA A 45 ? A 64 ? A 46 ? A 62 ? 1 A G 23 1_555 A C 32 1_555 A C 24 1_555 A G 31 1_555 -0.111 -1.505 3.174 -0.570 4.005 41.299 -2.530 0.100 3.023 5.661 0.806 41.488 20 AA_G46C47:G61C62_AA A 46 ? A 62 ? A 47 ? A 61 ? 1 A C 24 1_555 A G 31 1_555 A C 25 1_555 A G 30 1_555 0.508 -1.989 3.359 3.019 3.118 30.375 -4.375 -0.364 3.178 5.913 -5.726 30.676 21 AA_C47C48:G60G61_AA A 47 ? A 61 ? A 48 ? A 60 ? 1 A C 25 1_555 A G 30 1_555 A U 26 1_555 A G 29 1_555 -1.452 -0.786 3.348 4.337 4.369 93.792 -0.618 1.073 3.264 2.990 -2.968 93.947 22 AA_C48U48A:G48DG60_AA A 48 ? A 60 ? A 48 A A 48 D 1 B G 1 1_555 B CCC 57 1_555 B G 2 1_555 B C 56 1_555 0.485 -1.889 3.208 -0.268 10.558 32.407 -4.730 -0.866 2.485 18.321 0.464 34.041 23 BB_G24G25:C86CCC87_BB B 24 ? B 87 ? B 25 ? B 86 ? 1 B G 2 1_555 B C 56 1_555 B G 3 1_555 B C 55 1_555 0.588 -1.897 3.417 2.796 11.243 28.568 -5.658 -0.589 2.550 21.690 -5.393 30.783 24 BB_G25G26:C85C86_BB B 25 ? B 86 ? B 26 ? B 85 ? 1 B G 3 1_555 B C 55 1_555 B A 4 1_555 B U 54 1_555 0.005 -1.379 3.183 -0.231 7.294 32.973 -3.474 -0.043 2.822 12.659 0.401 33.749 25 BB_G26A27:U84C85_BB B 26 ? B 85 ? B 27 ? B 84 ? 1 B A 4 1_555 B U 54 1_555 B U 5 1_555 B G 53 1_555 0.665 -1.040 3.113 -0.924 2.610 40.021 -1.796 -1.068 3.027 3.808 1.348 40.113 26 BB_A27U28:G83U84_BB B 27 ? B 84 ? B 28 ? B 83 ? 1 B U 5 1_555 B G 53 1_555 B C 6 1_555 B G 52 1_555 -0.129 -2.089 3.062 4.735 3.273 24.426 -5.672 1.544 2.690 7.601 -10.997 25.086 27 BB_U28C29:G82G83_BB B 28 ? B 83 ? B 29 ? B 82 ? 1 B C 6 1_555 B G 52 1_555 B U 7 1_555 B G 51 1_555 0.208 -1.707 3.308 0.717 3.511 34.861 -3.356 -0.239 3.130 5.841 -1.193 35.039 28 BB_C29U30:G81G82_BB B 29 ? B 82 ? B 30 ? B 81 ? 1 B U 7 1_555 B G 51 1_555 B G 8 1_555 B C 50 1_555 -1.139 -1.814 3.108 -0.832 11.030 22.370 -6.947 2.432 2.039 26.453 1.995 24.924 29 BB_U30G31:C80G81_BB B 30 ? B 81 ? B 31 ? B 80 ? 1 B G 8 1_555 B C 50 1_555 B U 9 1_555 B G 49 1_555 0.202 -0.987 3.128 0.424 5.114 44.452 -1.735 -0.229 3.004 6.732 -0.559 44.733 30 BB_G31U32:G79C80_BB B 31 ? B 80 ? B 32 ? B 79 ? 1 B U 9 1_555 B G 49 1_555 B C 10 1_555 B G 48 1_555 0.371 -1.802 2.907 5.171 5.113 28.621 -4.464 0.209 2.579 10.136 -10.251 29.512 31 BB_U32C33:G78G79_BB B 32 ? B 79 ? B 33 ? B 78 ? 1 B C 10 1_555 B G 48 1_555 B C 12 1_555 B G 44 1_555 2.516 -0.693 3.138 4.081 -2.133 88.895 -0.451 -1.713 3.240 -1.522 -2.913 88.989 32 BB_C33C35:G74G78_BB B 33 ? B 78 ? B 35 ? B 74 ? 1 B C 12 1_555 B G 44 1_555 B C 13 1_555 B G 43 1_555 0.588 -2.165 3.243 -4.123 2.870 33.499 -4.159 -1.643 2.962 4.945 7.103 33.863 33 BB_C35C36:G73G74_BB B 35 ? B 74 ? B 36 ? B 73 ? 1 B C 13 1_555 B G 43 1_555 B C 14 1_555 B G 40 1_555 1.250 -1.719 3.356 -0.920 7.776 44.473 -2.922 -1.710 3.005 10.180 1.205 45.123 34 BB_C36C37:G70G73_BB B 36 ? B 73 ? B 37 ? B 70 ? 1 B C 14 1_555 B G 40 1_555 B C 15 1_555 B G 39 1_555 -0.526 -2.003 3.464 -4.869 9.017 31.488 -5.027 0.109 2.846 16.091 8.689 33.073 35 BB_C37C38:G69G70_BB B 37 ? B 70 ? B 38 ? B 69 ? 1 B C 15 1_555 B G 39 1_555 B A 16 1_555 B U 38 1_555 0.074 -1.449 3.328 3.349 11.400 32.162 -4.163 0.375 2.669 19.756 -5.803 34.232 36 BB_C38A39:U68G69_BB B 38 ? B 69 ? B 39 ? B 68 ? 1 B A 16 1_555 B U 38 1_555 B G 19 1_555 B C 37 1_555 -1.813 -1.380 3.151 -4.189 7.045 48.620 -2.160 1.875 3.072 8.486 5.046 49.265 37 BB_A39G42:C67U68_BB B 39 ? B 68 ? B 42 ? B 67 ? 1 B G 19 1_555 B C 37 1_555 B A 20 1_555 B U 36 1_555 -1.161 -2.289 2.971 -1.596 6.747 24.856 -6.689 2.232 2.346 15.298 3.618 25.790 38 BB_G42A43:U66C67_BB B 42 ? B 67 ? B 43 ? B 66 ? 1 B A 20 1_555 B U 36 1_555 B U 21 1_555 B A 35 1_555 0.156 -0.703 2.946 1.117 6.451 32.669 -2.174 -0.109 2.764 11.327 -1.962 33.301 39 BB_A43U44:A65U66_BB B 43 ? B 66 ? B 44 ? B 65 ? 1 B U 21 1_555 B A 35 1_555 B C 22 1_555 B G 34 1_555 0.728 -1.565 3.283 0.302 4.690 36.966 -3.057 -1.100 3.074 7.359 -0.474 37.253 40 BB_U44C45:G64A65_BB B 44 ? B 65 ? B 45 ? B 64 ? 1 B C 22 1_555 B G 34 1_555 B G 23 1_555 B C 32 1_555 2.001 -1.775 3.181 -3.395 6.063 31.266 -4.193 -4.175 2.575 11.078 6.203 32.010 41 BB_C45G46:C62G64_BB B 45 ? B 64 ? B 46 ? B 62 ? 1 B G 23 1_555 B C 32 1_555 B C 24 1_555 B G 31 1_555 0.193 -1.486 3.310 -0.377 1.634 43.220 -2.176 -0.299 3.252 2.218 0.511 43.251 42 BB_G46C47:G61C62_BB B 46 ? B 62 ? B 47 ? B 61 ? 1 B C 24 1_555 B G 31 1_555 B C 25 1_555 B G 30 1_555 0.149 -1.931 3.387 2.374 3.550 31.071 -4.244 0.173 3.154 6.587 -4.405 31.356 43 BB_C47C48:G60G61_BB B 47 ? B 61 ? B 48 ? B 60 ? 1 B C 25 1_555 B G 30 1_555 B U 26 1_555 B G 29 1_555 -1.334 -1.148 3.429 6.159 4.777 89.779 -0.910 1.071 3.301 3.379 -4.357 90.045 44 BB_C48U48A:G48DG60_BB B 48 ? B 60 ? B 48 A B 48 D # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'French National Research Agency' France ANR-06-BLAN-0072 1 'French National Research Agency' France ANR-12-BSV5-0018 2 'French National Research Agency' France ANR-10-INSB-05-01 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'GOLD ION' AU 3 'MAGNESIUM ION' MG 4 'SODIUM ION' NA 5 water HOH #