data_5LYU # _entry.id 5LYU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5LYU pdb_00005lyu 10.2210/pdb5lyu/pdb WWPDB D_1200001589 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-01-25 2 'Structure model' 1 1 2017-05-03 3 'Structure model' 1 2 2017-08-30 4 'Structure model' 1 3 2018-04-18 5 'Structure model' 1 4 2024-01-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Structure summary' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_audit_support 2 3 'Structure model' struct_conn 3 4 'Structure model' entity 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 7 5 'Structure model' pdbx_initial_refinement_model 8 5 'Structure model' struct_conn 9 5 'Structure model' struct_conn_type # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_audit_support.funding_organization' 2 4 'Structure model' '_entity.pdbx_description' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_conn.conn_type_id' 6 5 'Structure model' '_struct_conn.id' 7 5 'Structure model' '_struct_conn.pdbx_dist_value' 8 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 9 5 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 10 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 11 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 17 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 18 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 24 5 'Structure model' '_struct_conn_type.id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5LYU _pdbx_database_status.recvd_initial_deposition_date 2016-09-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Martinez-Zapien, D.' 1 'Legrand, P.' 2 'McEwen, A.C.' 3 'Pasquali, S.' 4 'Dock-Bregeon, A.-C.' 5 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 45 _citation.language ? _citation.page_first 3568 _citation.page_last 3579 _citation.title 'The crystal structure of the 5 functional domain of the transcription riboregulator 7SK.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkw1351 _citation.pdbx_database_id_PubMed 28082395 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Martinez-Zapien, D.' 1 ? primary 'Legrand, P.' 2 ? primary 'McEwen, A.G.' 3 ? primary 'Proux, F.' 4 ? primary 'Cragnolini, T.' 5 ? primary 'Pasquali, S.' 6 ? primary 'Dock-Bregeon, A.C.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '7SK RNA' 18675.945 2 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 229 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GGGGAUCUGUCACCCCAUUGAUCGCCUUCGGGCUGAUCUGGCUGGCUAGGCGGGUCC(CCC)' _entity_poly.pdbx_seq_one_letter_code_can GGGGAUCUGUCACCCCAUUGAUCGCCUUCGGGCUGAUCUGGCUGGCUAGGCGGGUCCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'CHLORIDE ION' CL 4 'MAGNESIUM ION' MG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 G n 1 5 A n 1 6 U n 1 7 C n 1 8 U n 1 9 G n 1 10 U n 1 11 C n 1 12 A n 1 13 C n 1 14 C n 1 15 C n 1 16 C n 1 17 A n 1 18 U n 1 19 U n 1 20 G n 1 21 A n 1 22 U n 1 23 C n 1 24 G n 1 25 C n 1 26 C n 1 27 U n 1 28 U n 1 29 C n 1 30 G n 1 31 G n 1 32 G n 1 33 C n 1 34 U n 1 35 G n 1 36 A n 1 37 U n 1 38 C n 1 39 U n 1 40 G n 1 41 G n 1 42 C n 1 43 U n 1 44 G n 1 45 G n 1 46 C n 1 47 U n 1 48 A n 1 49 G n 1 50 G n 1 51 C n 1 52 G n 1 53 G n 1 54 G n 1 55 U n 1 56 C n 1 57 C n 1 58 CCC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 58 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name HUMAN _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CCC 'RNA linking' n ;CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C9 H13 N3 O10 P2' 385.161 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 23 23 G G A . n A 1 2 G 2 24 24 G G A . n A 1 3 G 3 25 25 G G A . n A 1 4 G 4 26 26 G G A . n A 1 5 A 5 27 27 A A A . n A 1 6 U 6 28 28 U U A . n A 1 7 C 7 29 29 C C A . n A 1 8 U 8 30 30 U U A . n A 1 9 G 9 31 31 G G A . n A 1 10 U 10 32 32 U U A . n A 1 11 C 11 33 33 C C A . n A 1 12 A 12 34 34 A A A . n A 1 13 C 13 35 35 C C A . n A 1 14 C 14 36 36 C C A . n A 1 15 C 15 37 37 C C A . n A 1 16 C 16 38 38 C C A . n A 1 17 A 17 39 39 A A A . n A 1 18 U 18 40 40 U U A . n A 1 19 U 19 41 41 U U A . n A 1 20 G 20 42 42 G G A . n A 1 21 A 21 43 43 A A A . n A 1 22 U 22 44 44 U U A . n A 1 23 C 23 45 45 C C A . n A 1 24 G 24 46 46 G G A . n A 1 25 C 25 47 47 C C A . n A 1 26 C 26 48 48 C C A . n A 1 27 U 27 48 48 U U A A n A 1 28 U 28 48 48 U U A B n A 1 29 C 29 48 48 C C A C n A 1 30 G 30 48 48 G G A D n A 1 31 G 31 60 60 G G A . n A 1 32 G 32 61 61 G G A . n A 1 33 C 33 62 62 C C A . n A 1 34 U 34 63 63 U U A . n A 1 35 G 35 64 64 G G A . n A 1 36 A 36 65 65 A A A . n A 1 37 U 37 66 66 U U A . n A 1 38 C 38 67 67 C C A . n A 1 39 U 39 68 68 U U A . n A 1 40 G 40 69 69 G G A . n A 1 41 G 41 70 70 G G A . n A 1 42 C 42 71 71 C C A . n A 1 43 U 43 72 72 U U A . n A 1 44 G 44 73 73 G G A . n A 1 45 G 45 74 74 G G A . n A 1 46 C 46 75 75 C C A . n A 1 47 U 47 76 76 U U A . n A 1 48 A 48 77 77 A A A . n A 1 49 G 49 78 78 G G A . n A 1 50 G 50 79 79 G G A . n A 1 51 C 51 80 80 C C A . n A 1 52 G 52 81 81 G G A . n A 1 53 G 53 82 82 G G A . n A 1 54 G 54 83 83 G G A . n A 1 55 U 55 84 84 U U A . n A 1 56 C 56 85 85 C C A . n A 1 57 C 57 86 86 C C A . n A 1 58 CCC 58 87 87 CCC CCC A . n B 1 1 G 1 23 23 G G B . n B 1 2 G 2 24 24 G G B . n B 1 3 G 3 25 25 G G B . n B 1 4 G 4 26 26 G G B . n B 1 5 A 5 27 27 A A B . n B 1 6 U 6 28 28 U U B . n B 1 7 C 7 29 29 C C B . n B 1 8 U 8 30 30 U U B . n B 1 9 G 9 31 31 G G B . n B 1 10 U 10 32 32 U U B . n B 1 11 C 11 33 33 C C B . n B 1 12 A 12 34 34 A A B . n B 1 13 C 13 35 35 C C B . n B 1 14 C 14 36 36 C C B . n B 1 15 C 15 37 37 C C B . n B 1 16 C 16 38 38 C C B . n B 1 17 A 17 39 39 A A B . n B 1 18 U 18 40 40 U U B . n B 1 19 U 19 41 41 U U B . n B 1 20 G 20 42 42 G G B . n B 1 21 A 21 43 43 A A B . n B 1 22 U 22 44 44 U U B . n B 1 23 C 23 45 45 C C B . n B 1 24 G 24 46 46 G G B . n B 1 25 C 25 47 47 C C B . n B 1 26 C 26 48 48 C C B . n B 1 27 U 27 48 48 U U B A n B 1 28 U 28 48 48 U U B B n B 1 29 C 29 48 48 C C B C n B 1 30 G 30 48 48 G G B D n B 1 31 G 31 60 60 G G B . n B 1 32 G 32 61 61 G G B . n B 1 33 C 33 62 62 C C B . n B 1 34 U 34 63 63 U U B . n B 1 35 G 35 64 64 G G B . n B 1 36 A 36 65 65 A A B . n B 1 37 U 37 66 66 U U B . n B 1 38 C 38 67 67 C C B . n B 1 39 U 39 68 68 U U B . n B 1 40 G 40 69 69 G G B . n B 1 41 G 41 70 70 G G B . n B 1 42 C 42 71 71 C C B . n B 1 43 U 43 72 72 U U B . n B 1 44 G 44 73 73 G G B . n B 1 45 G 45 74 74 G G B . n B 1 46 C 46 75 75 C C B . n B 1 47 U 47 76 76 U U B . n B 1 48 A 48 77 77 A A B . n B 1 49 G 49 78 78 G G B . n B 1 50 G 50 79 79 G G B . n B 1 51 C 51 80 80 C C B . n B 1 52 G 52 81 81 G G B . n B 1 53 G 53 82 82 G G B . n B 1 54 G 54 83 83 G G B . n B 1 55 U 55 84 84 U U B . n B 1 56 C 56 85 85 C C B . n B 1 57 C 57 86 86 C C B . n B 1 58 CCC 58 87 87 CCC CCC B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA 1 101 2 NA NA A . D 3 CL 1 102 1 CL CL A . E 4 MG 1 101 1 MG MG B . F 3 CL 1 102 2 CL CL B . G 5 HOH 1 201 211 HOH HOH A . G 5 HOH 2 202 55 HOH HOH A . G 5 HOH 3 203 15 HOH HOH A . G 5 HOH 4 204 186 HOH HOH A . G 5 HOH 5 205 98 HOH HOH A . G 5 HOH 6 206 105 HOH HOH A . G 5 HOH 7 207 121 HOH HOH A . G 5 HOH 8 208 2 HOH HOH A . G 5 HOH 9 209 16 HOH HOH A . G 5 HOH 10 210 38 HOH HOH A . G 5 HOH 11 211 225 HOH HOH A . G 5 HOH 12 212 94 HOH HOH A . G 5 HOH 13 213 116 HOH HOH A . G 5 HOH 14 214 118 HOH HOH A . G 5 HOH 15 215 75 HOH HOH A . G 5 HOH 16 216 133 HOH HOH A . G 5 HOH 17 217 40 HOH HOH A . G 5 HOH 18 218 141 HOH HOH A . G 5 HOH 19 219 87 HOH HOH A . G 5 HOH 20 220 4 HOH HOH A . G 5 HOH 21 221 93 HOH HOH A . G 5 HOH 22 222 150 HOH HOH A . G 5 HOH 23 223 166 HOH HOH A . G 5 HOH 24 224 72 HOH HOH A . G 5 HOH 25 225 178 HOH HOH A . G 5 HOH 26 226 29 HOH HOH A . G 5 HOH 27 227 193 HOH HOH A . G 5 HOH 28 228 129 HOH HOH A . G 5 HOH 29 229 37 HOH HOH A . G 5 HOH 30 230 114 HOH HOH A . G 5 HOH 31 231 25 HOH HOH A . G 5 HOH 32 232 12 HOH HOH A . G 5 HOH 33 233 113 HOH HOH A . G 5 HOH 34 234 62 HOH HOH A . G 5 HOH 35 235 227 HOH HOH A . G 5 HOH 36 236 177 HOH HOH A . G 5 HOH 37 237 88 HOH HOH A . G 5 HOH 38 238 19 HOH HOH A . G 5 HOH 39 239 213 HOH HOH A . G 5 HOH 40 240 184 HOH HOH A . G 5 HOH 41 241 179 HOH HOH A . G 5 HOH 42 242 45 HOH HOH A . G 5 HOH 43 243 192 HOH HOH A . G 5 HOH 44 244 28 HOH HOH A . G 5 HOH 45 245 18 HOH HOH A . G 5 HOH 46 246 176 HOH HOH A . G 5 HOH 47 247 220 HOH HOH A . G 5 HOH 48 248 122 HOH HOH A . G 5 HOH 49 249 132 HOH HOH A . G 5 HOH 50 250 84 HOH HOH A . G 5 HOH 51 251 1 HOH HOH A . G 5 HOH 52 252 30 HOH HOH A . G 5 HOH 53 253 142 HOH HOH A . G 5 HOH 54 254 74 HOH HOH A . G 5 HOH 55 255 224 HOH HOH A . G 5 HOH 56 256 110 HOH HOH A . G 5 HOH 57 257 66 HOH HOH A . G 5 HOH 58 258 151 HOH HOH A . G 5 HOH 59 259 64 HOH HOH A . G 5 HOH 60 260 222 HOH HOH A . G 5 HOH 61 261 77 HOH HOH A . G 5 HOH 62 262 33 HOH HOH A . G 5 HOH 63 263 205 HOH HOH A . G 5 HOH 64 264 97 HOH HOH A . G 5 HOH 65 265 17 HOH HOH A . G 5 HOH 66 266 60 HOH HOH A . G 5 HOH 67 267 124 HOH HOH A . G 5 HOH 68 268 49 HOH HOH A . G 5 HOH 69 269 57 HOH HOH A . G 5 HOH 70 270 91 HOH HOH A . G 5 HOH 71 271 83 HOH HOH A . G 5 HOH 72 272 169 HOH HOH A . G 5 HOH 73 273 147 HOH HOH A . G 5 HOH 74 274 51 HOH HOH A . G 5 HOH 75 275 175 HOH HOH A . G 5 HOH 76 276 92 HOH HOH A . G 5 HOH 77 277 90 HOH HOH A . G 5 HOH 78 278 81 HOH HOH A . G 5 HOH 79 279 157 HOH HOH A . G 5 HOH 80 280 96 HOH HOH A . G 5 HOH 81 281 161 HOH HOH A . G 5 HOH 82 282 204 HOH HOH A . G 5 HOH 83 283 59 HOH HOH A . G 5 HOH 84 284 216 HOH HOH A . G 5 HOH 85 285 89 HOH HOH A . G 5 HOH 86 286 219 HOH HOH A . G 5 HOH 87 287 203 HOH HOH A . G 5 HOH 88 288 44 HOH HOH A . G 5 HOH 89 289 228 HOH HOH A . G 5 HOH 90 290 191 HOH HOH A . G 5 HOH 91 291 152 HOH HOH A . G 5 HOH 92 292 165 HOH HOH A . G 5 HOH 93 293 173 HOH HOH A . G 5 HOH 94 294 117 HOH HOH A . G 5 HOH 95 295 209 HOH HOH A . G 5 HOH 96 296 65 HOH HOH A . G 5 HOH 97 297 153 HOH HOH A . G 5 HOH 98 298 206 HOH HOH A . G 5 HOH 99 299 218 HOH HOH A . G 5 HOH 100 300 170 HOH HOH A . G 5 HOH 101 301 168 HOH HOH A . G 5 HOH 102 302 172 HOH HOH A . G 5 HOH 103 303 221 HOH HOH A . G 5 HOH 104 304 171 HOH HOH A . G 5 HOH 105 305 217 HOH HOH A . H 5 HOH 1 201 188 HOH HOH B . H 5 HOH 2 202 39 HOH HOH B . H 5 HOH 3 203 187 HOH HOH B . H 5 HOH 4 204 9 HOH HOH B . H 5 HOH 5 205 14 HOH HOH B . H 5 HOH 6 206 11 HOH HOH B . H 5 HOH 7 207 134 HOH HOH B . H 5 HOH 8 208 143 HOH HOH B . H 5 HOH 9 209 56 HOH HOH B . H 5 HOH 10 210 70 HOH HOH B . H 5 HOH 11 211 112 HOH HOH B . H 5 HOH 12 212 182 HOH HOH B . H 5 HOH 13 213 111 HOH HOH B . H 5 HOH 14 214 58 HOH HOH B . H 5 HOH 15 215 24 HOH HOH B . H 5 HOH 16 216 6 HOH HOH B . H 5 HOH 17 217 53 HOH HOH B . H 5 HOH 18 218 35 HOH HOH B . H 5 HOH 19 219 13 HOH HOH B . H 5 HOH 20 220 22 HOH HOH B . H 5 HOH 21 221 68 HOH HOH B . H 5 HOH 22 222 180 HOH HOH B . H 5 HOH 23 223 167 HOH HOH B . H 5 HOH 24 224 130 HOH HOH B . H 5 HOH 25 225 10 HOH HOH B . H 5 HOH 26 226 181 HOH HOH B . H 5 HOH 27 227 21 HOH HOH B . H 5 HOH 28 228 80 HOH HOH B . H 5 HOH 29 229 199 HOH HOH B . H 5 HOH 30 230 95 HOH HOH B . H 5 HOH 31 231 23 HOH HOH B . H 5 HOH 32 232 31 HOH HOH B . H 5 HOH 33 233 226 HOH HOH B . H 5 HOH 34 234 223 HOH HOH B . H 5 HOH 35 235 156 HOH HOH B . H 5 HOH 36 236 137 HOH HOH B . H 5 HOH 37 237 26 HOH HOH B . H 5 HOH 38 238 149 HOH HOH B . H 5 HOH 39 239 189 HOH HOH B . H 5 HOH 40 240 128 HOH HOH B . H 5 HOH 41 241 214 HOH HOH B . H 5 HOH 42 242 106 HOH HOH B . H 5 HOH 43 243 135 HOH HOH B . H 5 HOH 44 244 36 HOH HOH B . H 5 HOH 45 245 34 HOH HOH B . H 5 HOH 46 246 5 HOH HOH B . H 5 HOH 47 247 73 HOH HOH B . H 5 HOH 48 248 8 HOH HOH B . H 5 HOH 49 249 107 HOH HOH B . H 5 HOH 50 250 101 HOH HOH B . H 5 HOH 51 251 99 HOH HOH B . H 5 HOH 52 252 139 HOH HOH B . H 5 HOH 53 253 3 HOH HOH B . H 5 HOH 54 254 69 HOH HOH B . H 5 HOH 55 255 196 HOH HOH B . H 5 HOH 56 256 126 HOH HOH B . H 5 HOH 57 257 78 HOH HOH B . H 5 HOH 58 258 125 HOH HOH B . H 5 HOH 59 259 155 HOH HOH B . H 5 HOH 60 260 127 HOH HOH B . H 5 HOH 61 261 82 HOH HOH B . H 5 HOH 62 262 207 HOH HOH B . H 5 HOH 63 263 27 HOH HOH B . H 5 HOH 64 264 120 HOH HOH B . H 5 HOH 65 265 109 HOH HOH B . H 5 HOH 66 266 20 HOH HOH B . H 5 HOH 67 267 76 HOH HOH B . H 5 HOH 68 268 108 HOH HOH B . H 5 HOH 69 269 200 HOH HOH B . H 5 HOH 70 270 43 HOH HOH B . H 5 HOH 71 271 190 HOH HOH B . H 5 HOH 72 272 102 HOH HOH B . H 5 HOH 73 273 145 HOH HOH B . H 5 HOH 74 274 185 HOH HOH B . H 5 HOH 75 275 115 HOH HOH B . H 5 HOH 76 276 7 HOH HOH B . H 5 HOH 77 277 52 HOH HOH B . H 5 HOH 78 278 85 HOH HOH B . H 5 HOH 79 279 41 HOH HOH B . H 5 HOH 80 280 174 HOH HOH B . H 5 HOH 81 281 61 HOH HOH B . H 5 HOH 82 282 42 HOH HOH B . H 5 HOH 83 283 148 HOH HOH B . H 5 HOH 84 284 100 HOH HOH B . H 5 HOH 85 285 212 HOH HOH B . H 5 HOH 86 286 103 HOH HOH B . H 5 HOH 87 287 50 HOH HOH B . H 5 HOH 88 288 123 HOH HOH B . H 5 HOH 89 289 32 HOH HOH B . H 5 HOH 90 290 144 HOH HOH B . H 5 HOH 91 291 67 HOH HOH B . H 5 HOH 92 292 146 HOH HOH B . H 5 HOH 93 293 79 HOH HOH B . H 5 HOH 94 294 46 HOH HOH B . H 5 HOH 95 295 71 HOH HOH B . H 5 HOH 96 296 131 HOH HOH B . H 5 HOH 97 297 154 HOH HOH B . H 5 HOH 98 298 162 HOH HOH B . H 5 HOH 99 299 63 HOH HOH B . H 5 HOH 100 300 54 HOH HOH B . H 5 HOH 101 301 86 HOH HOH B . H 5 HOH 102 302 164 HOH HOH B . H 5 HOH 103 303 104 HOH HOH B . H 5 HOH 104 304 208 HOH HOH B . H 5 HOH 105 305 119 HOH HOH B . H 5 HOH 106 306 47 HOH HOH B . H 5 HOH 107 307 194 HOH HOH B . H 5 HOH 108 308 160 HOH HOH B . H 5 HOH 109 309 195 HOH HOH B . H 5 HOH 110 310 140 HOH HOH B . H 5 HOH 111 311 48 HOH HOH B . H 5 HOH 112 312 159 HOH HOH B . H 5 HOH 113 313 136 HOH HOH B . H 5 HOH 114 314 202 HOH HOH B . H 5 HOH 115 315 215 HOH HOH B . H 5 HOH 116 316 163 HOH HOH B . H 5 HOH 117 317 183 HOH HOH B . H 5 HOH 118 318 198 HOH HOH B . H 5 HOH 119 319 197 HOH HOH B . H 5 HOH 120 320 201 HOH HOH B . H 5 HOH 121 321 138 HOH HOH B . H 5 HOH 122 322 158 HOH HOH B . H 5 HOH 123 323 229 HOH HOH B . H 5 HOH 124 324 210 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER-TNT ? ? ? 2.10.2 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.20 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 99.050 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5LYU _cell.details ? _cell.formula_units_Z ? _cell.length_a 45.790 _cell.length_a_esd ? _cell.length_b 47.780 _cell.length_b_esd ? _cell.length_c 68.670 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LYU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5LYU _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.02 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 39.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '30% PEG 1000, 50 mM Tris pH 7.5, 50 to 75 mM NaCl, 50 mM MgCl2' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2010-01-29 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9797 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE BM30A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9797 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BM30A _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate 59.76 _reflns.entry_id 5LYU _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.2 _reflns.d_resolution_low 30 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13144 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 87.3 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.4 _reflns.pdbx_Rmerge_I_obs 0.039 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 18.57 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.33 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.97 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 52.0 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.939 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.38 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.425 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 2.6653 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 5.0623 _refine.aniso_B[2][2] -0.5550 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -2.1103 _refine.B_iso_max 113.740 _refine.B_iso_mean 58.6500 _refine.B_iso_min 24.630 _refine.correlation_coeff_Fo_to_Fc 0.9587 _refine.correlation_coeff_Fo_to_Fc_free 0.9347 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5LYU _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.2000 _refine.ls_d_res_low 28.3200 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13139 _refine.ls_number_reflns_R_free 553 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 87.1700 _refine.ls_percent_reflns_R_free 4.2100 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1935 _refine.ls_R_factor_R_free 0.2396 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1913 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model 5LYS _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.2540 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.2750 _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI 0.6060 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 5LYU _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.316 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.2000 _refine_hist.d_res_low 28.3200 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 230 _refine_hist.number_atoms_total 2706 _refine_hist.pdbx_number_residues_total 116 _refine_hist.pdbx_B_iso_mean_ligand 63.04 _refine_hist.pdbx_B_iso_mean_solvent 55.62 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2472 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? ? ? 634 ? t_dihedral_angle_d 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? ? ? t_trig_c_planes ? ? 'X-RAY DIFFRACTION' ? ? ? 126 ? t_gen_planes 5.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 2994 ? t_it 20.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 2 ? t_nbd 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ? 'X-RAY DIFFRACTION' ? ? ? 504 ? t_chiral_improper_torsion 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 3246 ? t_ideal_dist_contact 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? 0.010 ? 2994 ? t_bond_d 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 0.810 ? 4668 ? t_angle_deg 2.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 23.650 ? ? ? t_other_torsion ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.2000 _refine_ls_shell.d_res_low 2.3800 _refine_ls_shell.number_reflns_all 1658 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 72 _refine_ls_shell.number_reflns_R_work 1586 _refine_ls_shell.percent_reflns_obs 54.1500 _refine_ls_shell.percent_reflns_R_free 4.3400 _refine_ls_shell.R_factor_all 0.2383 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3018 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2356 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 7 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5LYU _struct.title ;The native crystal structure of 7SK 5'-hairpin ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5LYU _struct_keywords.text 'non-coding RNA major groove base triple transcription, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 3 ? G N N 5 ? H N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5LYU _struct_ref.pdbx_db_accession 5LYU _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5LYU A 1 ? 58 ? 5LYU 23 ? 87 ? 23 87 2 1 5LYU B 1 ? 58 ? 5LYU 23 ? 87 ? 23 87 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,G 2 1 B,E,F,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 57 "O3'" ? ? ? 1_555 A CCC 58 P ? ? A C 86 A CCC 87 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale2 covale both ? B C 57 "O3'" ? ? ? 1_555 B CCC 58 P ? ? B C 86 B CCC 87 1_555 ? ? ? ? ? ? ? 1.676 ? ? metalc1 metalc ? ? A A 12 OP1 B ? ? 1_555 C NA . NA ? ? A A 34 A NA 101 1_555 ? ? ? ? ? ? ? 2.348 ? ? metalc2 metalc ? ? A A 12 OP2 A ? ? 1_555 C NA . NA ? ? A A 34 A NA 101 1_555 ? ? ? ? ? ? ? 2.820 ? ? metalc3 metalc ? ? C NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 101 A HOH 230 1_555 ? ? ? ? ? ? ? 2.820 ? ? metalc4 metalc ? ? C NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 101 A HOH 233 1_555 ? ? ? ? ? ? ? 2.852 ? ? metalc5 metalc ? ? C NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 101 A HOH 288 1_555 ? ? ? ? ? ? ? 2.546 ? ? metalc6 metalc ? ? C NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 101 A HOH 297 1_555 ? ? ? ? ? ? ? 2.551 ? ? metalc7 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 229 1_555 ? ? ? ? ? ? ? 2.535 ? ? metalc8 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 269 1_555 ? ? ? ? ? ? ? 1.940 ? ? metalc9 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 314 1_555 ? ? ? ? ? ? ? 1.984 ? ? metalc10 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 318 1_555 ? ? ? ? ? ? ? 2.242 ? ? metalc11 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 319 1_555 ? ? ? ? ? ? ? 1.937 ? ? metalc12 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 320 1_555 ? ? ? ? ? ? ? 2.022 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A CCC 58 N3 ? ? A G 24 A CCC 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A CCC 58 O2 ? ? A G 24 A CCC 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A CCC 58 N4 ? ? A G 24 A CCC 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 25 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 25 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 25 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 26 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 26 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 26 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 55 N3 ? ? A A 27 A U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 55 O4 ? ? A A 27 A U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 6 N3 ? ? ? 1_555 A G 54 O6 ? ? A U 28 A G 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A U 6 O2 ? ? ? 1_555 A G 54 N1 ? ? A U 28 A G 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 53 N1 ? ? A C 29 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 53 O6 ? ? A C 29 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 53 N2 ? ? A C 29 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 8 N3 ? ? ? 1_555 A G 52 O6 ? ? A U 30 A G 81 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A U 8 O2 ? ? ? 1_555 A G 52 N1 ? ? A U 30 A G 81 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog19 hydrog ? ? A G 9 N7 ? ? ? 1_555 A A 48 N6 ? ? A G 31 A A 77 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog20 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 51 N3 ? ? A G 31 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 51 O2 ? ? A G 31 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 51 N4 ? ? A G 31 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 48 N6 ? ? A U 32 A A 77 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog24 hydrog ? ? A U 10 N3 ? ? ? 1_555 A G 50 O6 ? ? A U 32 A G 79 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog25 hydrog ? ? A U 10 O2 ? ? ? 1_555 A G 50 N1 ? ? A U 32 A G 79 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? A C 11 N3 A ? ? 1_555 A G 49 N1 ? ? A C 33 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 11 N3 B ? ? 1_555 A G 49 N1 ? ? A C 33 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 11 N4 A ? ? 1_555 A G 49 O6 ? ? A C 33 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 11 N4 B ? ? 1_555 A G 49 O6 ? ? A C 33 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 11 O2 A ? ? 1_555 A G 49 N2 ? ? A C 33 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 11 O2 B ? ? 1_555 A G 49 N2 ? ? A C 33 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A A 12 N6 A ? ? 1_555 A G 40 N7 ? ? A A 34 A G 69 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog33 hydrog ? ? A A 12 N6 B ? ? 1_555 A G 40 N7 ? ? A A 34 A G 69 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog34 hydrog ? ? A C 13 N3 A ? ? 1_555 A G 45 N1 A ? A C 35 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 13 N3 B ? ? 1_555 A G 45 N1 B ? A C 35 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 13 N4 A ? ? 1_555 A G 45 O6 A ? A C 35 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 13 N4 B ? ? 1_555 A G 45 O6 B ? A C 35 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 13 O2 A ? ? 1_555 A G 45 N2 A ? A C 35 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 13 O2 B ? ? 1_555 A G 45 N2 B ? A C 35 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 44 N1 A ? A C 36 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 44 N1 B ? A C 36 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 44 O6 A ? A C 36 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 44 O6 B ? A C 36 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 44 N2 A ? A C 36 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 44 N2 B ? A C 36 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 41 N1 ? ? A C 37 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 41 O6 ? ? A C 37 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 41 N2 ? ? A C 37 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 40 N1 ? ? A C 38 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 40 O6 ? ? A C 38 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 40 N2 ? ? A C 38 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 39 N3 ? ? A A 39 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 39 O4 ? ? A A 39 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 21 N7 ? ? A U 40 A A 43 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog55 hydrog ? ? A U 18 O4 ? ? ? 1_555 A A 21 N6 ? ? A U 40 A A 43 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog56 hydrog ? ? A G 20 O6 ? ? ? 1_555 A U 34 N3 ? ? A G 42 A U 63 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog57 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 38 N3 ? ? A G 42 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 38 O2 ? ? A G 42 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 38 N4 ? ? A G 42 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A A 21 N1 ? ? ? 1_555 A U 37 N3 ? ? A A 43 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A A 21 N6 ? ? ? 1_555 A U 37 O4 ? ? A A 43 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 36 N1 ? ? A U 44 A A 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A U 22 O4 ? ? ? 1_555 A A 36 N6 ? ? A U 44 A A 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 45 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 45 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 45 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 46 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 46 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 46 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 47 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 47 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 47 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 26 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 48 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A C 26 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 48 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 26 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 48 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A U 27 O2 ? A ? 1_555 A G 30 N1 ? D A U 48 A G 48 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog77 hydrog ? ? A U 34 O2 ? ? ? 1_555 A C 38 N4 ? ? A U 63 A C 67 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog78 hydrog ? ? A C 42 N4 A ? ? 1_555 A G 45 O6 A ? A C 71 A G 74 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog79 hydrog ? ? A C 42 N4 B ? ? 1_555 A G 45 O6 B ? A C 71 A G 74 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog80 hydrog ? ? A C 46 N4 ? ? ? 1_555 A G 49 O6 ? ? A C 75 A G 78 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog81 hydrog ? ? B G 2 N1 ? ? ? 1_555 B CCC 58 N3 ? ? B G 24 B CCC 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B G 2 N2 ? ? ? 1_555 B CCC 58 O2 ? ? B G 24 B CCC 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B G 2 O6 ? ? ? 1_555 B CCC 58 N4 ? ? B G 24 B CCC 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 57 N3 ? ? B G 25 B C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 57 O2 ? ? B G 25 B C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 57 N4 ? ? B G 25 B C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 56 N3 ? ? B G 26 B C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 56 O2 ? ? B G 26 B C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 56 N4 ? ? B G 26 B C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B A 5 N1 ? ? ? 1_555 B U 55 N3 ? ? B A 27 B U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B A 5 N6 ? ? ? 1_555 B U 55 O4 ? ? B A 27 B U 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B U 6 N3 ? ? ? 1_555 B G 54 O6 ? ? B U 28 B G 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog93 hydrog ? ? B U 6 O2 ? ? ? 1_555 B G 54 N1 ? ? B U 28 B G 83 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog94 hydrog ? ? B C 7 N3 ? ? ? 1_555 B G 53 N1 ? ? B C 29 B G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B C 7 N4 ? ? ? 1_555 B G 53 O6 ? ? B C 29 B G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B C 7 O2 ? ? ? 1_555 B G 53 N2 ? ? B C 29 B G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B U 8 N3 ? ? ? 1_555 B G 52 O6 ? ? B U 30 B G 81 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog98 hydrog ? ? B U 8 O2 ? ? ? 1_555 B G 52 N1 ? ? B U 30 B G 81 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog99 hydrog ? ? B G 9 N7 ? ? ? 1_555 B A 48 N6 ? ? B G 31 B A 77 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog100 hydrog ? ? B G 9 N1 ? ? ? 1_555 B C 51 N3 ? ? B G 31 B C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B G 9 N2 ? ? ? 1_555 B C 51 O2 ? ? B G 31 B C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B G 9 O6 ? ? ? 1_555 B C 51 N4 ? ? B G 31 B C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 48 N6 ? ? B U 32 B A 77 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog104 hydrog ? ? B U 10 N3 ? ? ? 1_555 B G 50 O6 ? ? B U 32 B G 79 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog105 hydrog ? ? B U 10 O2 ? ? ? 1_555 B G 50 N1 ? ? B U 32 B G 79 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog106 hydrog ? ? B C 11 N3 ? ? ? 1_555 B G 49 N1 ? ? B C 33 B G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B C 11 N4 ? ? ? 1_555 B G 49 O6 ? ? B C 33 B G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B C 11 O2 ? ? ? 1_555 B G 49 N2 ? ? B C 33 B G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B A 12 N6 ? ? ? 1_555 B G 40 N7 ? ? B A 34 B G 69 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog110 hydrog ? ? B C 13 N3 ? ? ? 1_555 B G 45 N1 ? ? B C 35 B G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 45 O6 ? ? B C 35 B G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? B C 13 O2 ? ? ? 1_555 B G 45 N2 ? ? B C 35 B G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? B C 14 N3 ? ? ? 1_555 B G 44 N1 ? ? B C 36 B G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? B C 14 N4 ? ? ? 1_555 B G 44 O6 ? ? B C 36 B G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? B C 14 O2 ? ? ? 1_555 B G 44 N2 ? ? B C 36 B G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 41 N1 ? ? B C 37 B G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 41 O6 ? ? B C 37 B G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 41 N2 ? ? B C 37 B G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? B C 16 N3 ? ? ? 1_555 B G 40 N1 ? ? B C 38 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? B C 16 N4 ? ? ? 1_555 B G 40 O6 ? ? B C 38 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? B C 16 O2 ? ? ? 1_555 B G 40 N2 ? ? B C 38 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? B A 17 N1 ? ? ? 1_555 B U 39 N3 ? ? B A 39 B U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? B A 17 N6 ? ? ? 1_555 B U 39 O4 ? ? B A 39 B U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? B U 18 N3 A ? ? 1_555 B A 21 N7 ? ? B U 40 B A 43 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog125 hydrog ? ? B U 18 N3 B ? ? 1_555 B A 21 N7 ? ? B U 40 B A 43 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog126 hydrog ? ? B U 18 O4 A ? ? 1_555 B A 21 N6 ? ? B U 40 B A 43 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog127 hydrog ? ? B U 18 O4 B ? ? 1_555 B A 21 N6 ? ? B U 40 B A 43 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog128 hydrog ? ? B G 20 O6 A ? ? 1_555 B U 34 N3 ? ? B G 42 B U 63 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog129 hydrog ? ? B G 20 O6 B ? ? 1_555 B U 34 N3 ? ? B G 42 B U 63 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog130 hydrog ? ? B G 20 N1 A ? ? 1_555 B C 38 N3 ? ? B G 42 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? B G 20 N1 B ? ? 1_555 B C 38 N3 ? ? B G 42 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? B G 20 N2 A ? ? 1_555 B C 38 O2 ? ? B G 42 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? B G 20 N2 B ? ? 1_555 B C 38 O2 ? ? B G 42 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? B G 20 O6 A ? ? 1_555 B C 38 N4 ? ? B G 42 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? B G 20 O6 B ? ? 1_555 B C 38 N4 ? ? B G 42 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog136 hydrog ? ? B A 21 N1 ? ? ? 1_555 B U 37 N3 ? ? B A 43 B U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog137 hydrog ? ? B A 21 N6 ? ? ? 1_555 B U 37 O4 ? ? B A 43 B U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? B U 22 N3 ? ? ? 1_555 B A 36 N1 ? ? B U 44 B A 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? B U 22 O4 ? ? ? 1_555 B A 36 N6 ? ? B U 44 B A 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? B C 23 N3 ? ? ? 1_555 B G 35 N1 ? ? B C 45 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? B C 23 N4 ? ? ? 1_555 B G 35 O6 ? ? B C 45 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? B C 23 O2 ? ? ? 1_555 B G 35 N2 ? ? B C 45 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? B G 24 N1 ? ? ? 1_555 B C 33 N3 ? ? B G 46 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? B G 24 N2 ? ? ? 1_555 B C 33 O2 ? ? B G 46 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog145 hydrog ? ? B G 24 O6 ? ? ? 1_555 B C 33 N4 ? ? B G 46 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog146 hydrog ? ? B C 25 N3 ? ? ? 1_555 B G 32 N1 ? ? B C 47 B G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog147 hydrog ? ? B C 25 N4 ? ? ? 1_555 B G 32 O6 ? ? B C 47 B G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? B C 25 O2 ? ? ? 1_555 B G 32 N2 ? ? B C 47 B G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog149 hydrog ? ? B C 26 N3 ? ? ? 1_555 B G 31 N1 ? ? B C 48 B G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog150 hydrog ? ? B C 26 N4 ? ? ? 1_555 B G 31 O6 ? ? B C 48 B G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog151 hydrog ? ? B C 26 O2 ? ? ? 1_555 B G 31 N2 ? ? B C 48 B G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog152 hydrog ? ? B U 27 O2 ? A ? 1_555 B G 30 N1 ? D B U 48 B G 48 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog153 hydrog ? ? B U 34 O2 ? ? ? 1_555 B C 38 N4 ? ? B U 63 B C 67 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog154 hydrog ? ? B C 42 N4 ? ? ? 1_555 B G 45 O6 ? ? B C 71 B G 74 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog155 hydrog ? ? B C 46 N4 ? ? ? 1_555 B G 49 O6 ? ? B C 75 B G 78 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 B A A 12 ? A A 34 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 OP2 A A A 12 ? A A 34 ? 1_555 20.3 ? 2 OP1 B A A 12 ? A A 34 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? G HOH . ? A HOH 230 ? 1_555 115.2 ? 3 OP2 A A A 12 ? A A 34 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? G HOH . ? A HOH 230 ? 1_555 111.7 ? 4 OP1 B A A 12 ? A A 34 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? G HOH . ? A HOH 233 ? 1_555 174.8 ? 5 OP2 A A A 12 ? A A 34 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? G HOH . ? A HOH 233 ? 1_555 157.0 ? 6 O ? G HOH . ? A HOH 230 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? G HOH . ? A HOH 233 ? 1_555 59.9 ? 7 OP1 B A A 12 ? A A 34 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? G HOH . ? A HOH 288 ? 1_555 92.2 ? 8 OP2 A A A 12 ? A A 34 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? G HOH . ? A HOH 288 ? 1_555 102.0 ? 9 O ? G HOH . ? A HOH 230 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? G HOH . ? A HOH 288 ? 1_555 143.6 ? 10 O ? G HOH . ? A HOH 233 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? G HOH . ? A HOH 288 ? 1_555 93.0 ? 11 OP1 B A A 12 ? A A 34 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? G HOH . ? A HOH 297 ? 1_555 113.2 ? 12 OP2 A A A 12 ? A A 34 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? G HOH . ? A HOH 297 ? 1_555 93.7 ? 13 O ? G HOH . ? A HOH 230 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? G HOH . ? A HOH 297 ? 1_555 90.2 ? 14 O ? G HOH . ? A HOH 233 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? G HOH . ? A HOH 297 ? 1_555 66.2 ? 15 O ? G HOH . ? A HOH 288 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? G HOH . ? A HOH 297 ? 1_555 101.0 ? 16 O ? H HOH . ? B HOH 229 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 269 ? 1_555 93.3 ? 17 O ? H HOH . ? B HOH 229 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 314 ? 1_555 91.8 ? 18 O ? H HOH . ? B HOH 269 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 314 ? 1_555 91.8 ? 19 O ? H HOH . ? B HOH 229 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 318 ? 1_555 88.7 ? 20 O ? H HOH . ? B HOH 269 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 318 ? 1_555 173.4 ? 21 O ? H HOH . ? B HOH 314 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 318 ? 1_555 81.8 ? 22 O ? H HOH . ? B HOH 229 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 319 ? 1_555 90.2 ? 23 O ? H HOH . ? B HOH 269 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 319 ? 1_555 105.6 ? 24 O ? H HOH . ? B HOH 314 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 319 ? 1_555 162.3 ? 25 O ? H HOH . ? B HOH 318 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 319 ? 1_555 80.7 ? 26 O ? H HOH . ? B HOH 229 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 320 ? 1_555 175.8 ? 27 O ? H HOH . ? B HOH 269 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 320 ? 1_555 89.5 ? 28 O ? H HOH . ? B HOH 314 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 320 ? 1_555 85.0 ? 29 O ? H HOH . ? B HOH 318 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 320 ? 1_555 88.2 ? 30 O ? H HOH . ? B HOH 319 ? 1_555 MG ? E MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 320 ? 1_555 92.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 101 ? 5 'binding site for residue NA A 101' AC2 Software A CL 102 ? 2 'binding site for residue CL A 102' AC3 Software B MG 101 ? 6 'binding site for residue MG B 101' AC4 Software B CL 102 ? 2 'binding site for residue CL B 102' AC5 Software B C 86 ? 8 'binding site for Di-nucleotide C B 86 and CCC B 87' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 A A 12 ? A A 34 . ? 1_555 ? 2 AC1 5 HOH G . ? HOH A 230 . ? 1_555 ? 3 AC1 5 HOH G . ? HOH A 233 . ? 1_555 ? 4 AC1 5 HOH G . ? HOH A 288 . ? 1_555 ? 5 AC1 5 HOH G . ? HOH A 297 . ? 1_555 ? 6 AC2 2 C A 33 ? C A 62 . ? 1_555 ? 7 AC2 2 G A 35 ? G A 64 . ? 1_555 ? 8 AC3 6 HOH H . ? HOH B 229 . ? 1_555 ? 9 AC3 6 HOH H . ? HOH B 269 . ? 1_555 ? 10 AC3 6 HOH H . ? HOH B 314 . ? 1_555 ? 11 AC3 6 HOH H . ? HOH B 318 . ? 1_555 ? 12 AC3 6 HOH H . ? HOH B 319 . ? 1_555 ? 13 AC3 6 HOH H . ? HOH B 320 . ? 1_555 ? 14 AC4 2 C B 33 ? C B 62 . ? 1_555 ? 15 AC4 2 U B 34 ? U B 63 . ? 1_555 ? 16 AC5 8 G A 1 ? G A 23 . ? 1_556 ? 17 AC5 8 U A 28 B U A 48 . ? 1_455 ? 18 AC5 8 C A 29 C C A 48 . ? 1_455 ? 19 AC5 8 G B 2 ? G B 24 . ? 1_555 ? 20 AC5 8 G B 3 ? G B 25 . ? 1_555 ? 21 AC5 8 G B 4 ? G B 26 . ? 1_555 ? 22 AC5 8 C B 56 ? C B 85 . ? 1_555 ? 23 AC5 8 HOH H . ? HOH B 234 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A G 23 ? ? OP3 A G 23 ? ? 1.487 1.607 -0.120 0.012 N 2 1 P B G 23 ? ? OP3 B G 23 ? ? 1.485 1.607 -0.122 0.012 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OP1 A G 23 ? ? P A G 23 ? ? OP2 A G 23 ? ? 109.90 119.60 -9.70 1.50 N 2 1 "O3'" A C 86 ? ? P A CCC 87 ? ? OP2 A CCC 87 ? ? 124.58 110.50 14.08 1.10 Y 3 1 OP1 B G 23 ? ? P B G 23 ? ? OP2 B G 23 ? ? 109.88 119.60 -9.72 1.50 N 4 1 "O3'" B C 86 ? ? P B CCC 87 ? ? OP2 B CCC 87 ? ? 119.76 110.50 9.26 1.10 Y # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 10.2009 -0.0652 30.7894 -0.1501 -0.1734 -0.0870 -0.0161 0.0115 0.0457 2.3935 0.7439 3.9188 0.2929 0.4778 0.3258 0.0638 0.1261 -0.1900 0.3318 0.0130 -0.0692 -0.0578 -0.1170 0.3811 'X-RAY DIFFRACTION' 2 ? refined -13.6249 0.3211 33.7720 -0.1033 -0.1614 -0.1253 0.0090 -0.0180 -0.0252 2.3973 0.6000 1.7011 -0.0134 -0.6351 0.5369 0.0714 0.0057 -0.0771 -0.0270 -0.1668 0.0296 0.0482 -0.0004 -0.2024 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 23 A 87 '{ A|23 - A|87 }' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 23 B 87 '{ B|23 - B|87 }' ? ? ? ? ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CCC PC P N S 73 CCC O1C O N N 74 CCC O2C O N N 75 CCC P P N N 76 CCC OP1 O N N 77 CCC OP2 O N N 78 CCC OP3 O N N 79 CCC "O5'" O N N 80 CCC "C5'" C N N 81 CCC "C4'" C N R 82 CCC "O4'" O N N 83 CCC "C3'" C N R 84 CCC "O3'" O N N 85 CCC "C2'" C N R 86 CCC "O2'" O N N 87 CCC "C1'" C N R 88 CCC N1 N N N 89 CCC C2 C N N 90 CCC O2 O N N 91 CCC N3 N N N 92 CCC C4 C N N 93 CCC N4 N N N 94 CCC C5 C N N 95 CCC C6 C N N 96 CCC HOC2 H N N 97 CCC HOP2 H N N 98 CCC HOP3 H N N 99 CCC "H5'" H N N 100 CCC "H5''" H N N 101 CCC "H4'" H N N 102 CCC "H3'" H N N 103 CCC "H2'" H N N 104 CCC "H1'" H N N 105 CCC H41 H N N 106 CCC H42 H N N 107 CCC H5 H N N 108 CCC H6 H N N 109 CL CL CL N N 110 G OP3 O N N 111 G P P N N 112 G OP1 O N N 113 G OP2 O N N 114 G "O5'" O N N 115 G "C5'" C N N 116 G "C4'" C N R 117 G "O4'" O N N 118 G "C3'" C N S 119 G "O3'" O N N 120 G "C2'" C N R 121 G "O2'" O N N 122 G "C1'" C N R 123 G N9 N Y N 124 G C8 C Y N 125 G N7 N Y N 126 G C5 C Y N 127 G C6 C N N 128 G O6 O N N 129 G N1 N N N 130 G C2 C N N 131 G N2 N N N 132 G N3 N N N 133 G C4 C Y N 134 G HOP3 H N N 135 G HOP2 H N N 136 G "H5'" H N N 137 G "H5''" H N N 138 G "H4'" H N N 139 G "H3'" H N N 140 G "HO3'" H N N 141 G "H2'" H N N 142 G "HO2'" H N N 143 G "H1'" H N N 144 G H8 H N N 145 G H1 H N N 146 G H21 H N N 147 G H22 H N N 148 HOH O O N N 149 HOH H1 H N N 150 HOH H2 H N N 151 MG MG MG N N 152 NA NA NA N N 153 U OP3 O N N 154 U P P N N 155 U OP1 O N N 156 U OP2 O N N 157 U "O5'" O N N 158 U "C5'" C N N 159 U "C4'" C N R 160 U "O4'" O N N 161 U "C3'" C N S 162 U "O3'" O N N 163 U "C2'" C N R 164 U "O2'" O N N 165 U "C1'" C N R 166 U N1 N N N 167 U C2 C N N 168 U O2 O N N 169 U N3 N N N 170 U C4 C N N 171 U O4 O N N 172 U C5 C N N 173 U C6 C N N 174 U HOP3 H N N 175 U HOP2 H N N 176 U "H5'" H N N 177 U "H5''" H N N 178 U "H4'" H N N 179 U "H3'" H N N 180 U "HO3'" H N N 181 U "H2'" H N N 182 U "HO2'" H N N 183 U "H1'" H N N 184 U H3 H N N 185 U H5 H N N 186 U H6 H N N 187 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 CCC PC O1C doub N N 76 CCC PC O2C sing N N 77 CCC PC "O3'" sing N N 78 CCC PC "O2'" sing N N 79 CCC O2C HOC2 sing N N 80 CCC P OP1 doub N N 81 CCC P OP2 sing N N 82 CCC P OP3 sing N N 83 CCC P "O5'" sing N N 84 CCC OP2 HOP2 sing N N 85 CCC OP3 HOP3 sing N N 86 CCC "O5'" "C5'" sing N N 87 CCC "C5'" "C4'" sing N N 88 CCC "C5'" "H5'" sing N N 89 CCC "C5'" "H5''" sing N N 90 CCC "C4'" "O4'" sing N N 91 CCC "C4'" "C3'" sing N N 92 CCC "C4'" "H4'" sing N N 93 CCC "O4'" "C1'" sing N N 94 CCC "C3'" "O3'" sing N N 95 CCC "C3'" "C2'" sing N N 96 CCC "C3'" "H3'" sing N N 97 CCC "C2'" "O2'" sing N N 98 CCC "C2'" "C1'" sing N N 99 CCC "C2'" "H2'" sing N N 100 CCC "C1'" N1 sing N N 101 CCC "C1'" "H1'" sing N N 102 CCC N1 C2 sing N N 103 CCC N1 C6 sing N N 104 CCC C2 O2 doub N N 105 CCC C2 N3 sing N N 106 CCC N3 C4 doub N N 107 CCC C4 N4 sing N N 108 CCC C4 C5 sing N N 109 CCC N4 H41 sing N N 110 CCC N4 H42 sing N N 111 CCC C5 C6 doub N N 112 CCC C5 H5 sing N N 113 CCC C6 H6 sing N N 114 G OP3 P sing N N 115 G OP3 HOP3 sing N N 116 G P OP1 doub N N 117 G P OP2 sing N N 118 G P "O5'" sing N N 119 G OP2 HOP2 sing N N 120 G "O5'" "C5'" sing N N 121 G "C5'" "C4'" sing N N 122 G "C5'" "H5'" sing N N 123 G "C5'" "H5''" sing N N 124 G "C4'" "O4'" sing N N 125 G "C4'" "C3'" sing N N 126 G "C4'" "H4'" sing N N 127 G "O4'" "C1'" sing N N 128 G "C3'" "O3'" sing N N 129 G "C3'" "C2'" sing N N 130 G "C3'" "H3'" sing N N 131 G "O3'" "HO3'" sing N N 132 G "C2'" "O2'" sing N N 133 G "C2'" "C1'" sing N N 134 G "C2'" "H2'" sing N N 135 G "O2'" "HO2'" sing N N 136 G "C1'" N9 sing N N 137 G "C1'" "H1'" sing N N 138 G N9 C8 sing Y N 139 G N9 C4 sing Y N 140 G C8 N7 doub Y N 141 G C8 H8 sing N N 142 G N7 C5 sing Y N 143 G C5 C6 sing N N 144 G C5 C4 doub Y N 145 G C6 O6 doub N N 146 G C6 N1 sing N N 147 G N1 C2 sing N N 148 G N1 H1 sing N N 149 G C2 N2 sing N N 150 G C2 N3 doub N N 151 G N2 H21 sing N N 152 G N2 H22 sing N N 153 G N3 C4 sing N N 154 HOH O H1 sing N N 155 HOH O H2 sing N N 156 U OP3 P sing N N 157 U OP3 HOP3 sing N N 158 U P OP1 doub N N 159 U P OP2 sing N N 160 U P "O5'" sing N N 161 U OP2 HOP2 sing N N 162 U "O5'" "C5'" sing N N 163 U "C5'" "C4'" sing N N 164 U "C5'" "H5'" sing N N 165 U "C5'" "H5''" sing N N 166 U "C4'" "O4'" sing N N 167 U "C4'" "C3'" sing N N 168 U "C4'" "H4'" sing N N 169 U "O4'" "C1'" sing N N 170 U "C3'" "O3'" sing N N 171 U "C3'" "C2'" sing N N 172 U "C3'" "H3'" sing N N 173 U "O3'" "HO3'" sing N N 174 U "C2'" "O2'" sing N N 175 U "C2'" "C1'" sing N N 176 U "C2'" "H2'" sing N N 177 U "O2'" "HO2'" sing N N 178 U "C1'" N1 sing N N 179 U "C1'" "H1'" sing N N 180 U N1 C2 sing N N 181 U N1 C6 sing N N 182 U C2 O2 doub N N 183 U C2 N3 sing N N 184 U N3 C4 sing N N 185 U N3 H3 sing N N 186 U C4 O4 doub N N 187 U C4 C5 sing N N 188 U C5 C6 doub N N 189 U C5 H5 sing N N 190 U C6 H6 sing N N 191 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5LYU 'double helix' 5LYU 'a-form double helix' 5LYU tetraloop 5LYU 'bulge loop' 5LYU 'mismatched base pair' 5LYU 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A CCC 58 1_555 -0.724 -0.226 -0.055 -4.234 -18.066 0.262 1 A_G24:CCC87_A A 24 ? A 87 ? 19 1 1 A G 3 1_555 A C 57 1_555 -0.518 -0.110 0.071 -4.152 -17.883 3.536 2 A_G25:C86_A A 25 ? A 86 ? 19 1 1 A G 4 1_555 A C 56 1_555 -0.565 -0.143 0.031 -9.983 -15.685 1.183 3 A_G26:C85_A A 26 ? A 85 ? 19 1 1 A A 5 1_555 A U 55 1_555 0.327 -0.061 0.262 -6.973 -12.120 1.308 4 A_A27:U84_A A 27 ? A 84 ? 20 1 1 A U 6 1_555 A G 54 1_555 2.462 -0.552 0.369 -4.277 -9.657 0.002 5 A_U28:G83_A A 28 ? A 83 ? 28 1 1 A C 7 1_555 A G 53 1_555 0.470 -0.110 -0.026 3.451 -12.500 0.903 6 A_C29:G82_A A 29 ? A 82 ? 19 1 1 A U 8 1_555 A G 52 1_555 2.136 -0.511 0.138 -3.274 -11.478 1.103 7 A_U30:G81_A A 30 ? A 81 ? 28 1 1 A G 9 1_555 A C 51 1_555 -0.418 -0.260 0.206 -7.421 -15.951 -4.425 8 A_G31:C80_A A 31 ? A 80 ? 19 1 1 A U 10 1_555 A G 50 1_555 2.379 -0.617 0.434 -4.203 -16.422 -2.456 9 A_U32:G79_A A 32 ? A 79 ? 28 1 1 A C 11 1_555 A G 49 1_555 0.135 -0.123 0.331 -0.298 -6.896 -1.460 10 A_C33:G78_A A 33 ? A 78 ? 19 1 1 A C 13 1_555 A G 45 1_555 0.596 0.008 -0.323 18.178 -1.481 0.870 11 A_C35:G74_A A 35 ? A 74 ? 19 1 1 A C 14 1_555 A G 44 1_555 0.452 -0.139 -0.409 22.196 -9.166 2.524 12 A_C36:G73_A A 36 ? A 73 ? 19 1 1 A C 15 1_555 A G 41 1_555 0.520 -0.208 -0.396 11.108 -14.558 1.049 13 A_C37:G70_A A 37 ? A 70 ? 19 1 1 A C 16 1_555 A G 40 1_555 0.502 -0.293 0.259 -0.305 -10.302 -0.301 14 A_C38:G69_A A 38 ? A 69 ? 19 1 1 A A 17 1_555 A U 39 1_555 0.040 -0.149 0.039 -3.516 -21.343 -0.235 15 A_A39:U68_A A 39 ? A 68 ? 20 1 1 A G 20 1_555 A C 38 1_555 -0.275 -0.043 -0.094 -9.435 -7.007 2.593 16 A_G42:C67_A A 42 ? A 67 ? 19 1 1 A A 21 1_555 A U 37 1_555 -0.181 -0.007 -0.003 -1.398 -10.547 3.669 17 A_A43:U66_A A 43 ? A 66 ? 20 1 1 A U 22 1_555 A A 36 1_555 0.109 -0.110 -0.278 10.064 -13.279 1.432 18 A_U44:A65_A A 44 ? A 65 ? 20 1 1 A C 23 1_555 A G 35 1_555 0.549 -0.214 -0.006 2.514 -10.348 1.271 19 A_C45:G64_A A 45 ? A 64 ? 19 1 1 A G 24 1_555 A C 33 1_555 -0.715 -0.293 -0.036 4.648 -4.099 -0.947 20 A_G46:C62_A A 46 ? A 62 ? 19 1 1 A C 25 1_555 A G 32 1_555 0.709 -0.287 -0.332 12.365 -11.124 1.253 21 A_C47:G61_A A 47 ? A 61 ? 19 1 1 A C 26 1_555 A G 31 1_555 0.446 -0.217 -0.236 6.370 -4.056 -0.652 22 A_C48:G60_A A 48 ? A 60 ? 19 1 1 A U 27 1_555 A G 30 1_555 0.755 -5.328 -0.040 -6.729 -7.063 -111.273 23 A_U48A:G48D_A A 48 A A 48 D ? 6 1 B G 2 1_555 B CCC 58 1_555 -0.908 -0.263 0.167 -3.470 -15.205 -7.153 24 B_G24:CCC87_B B 24 ? B 87 ? 19 1 1 B G 3 1_555 B C 57 1_555 -0.453 -0.137 -0.060 -3.019 -16.888 0.170 25 B_G25:C86_B B 25 ? B 86 ? 19 1 1 B G 4 1_555 B C 56 1_555 -0.631 -0.044 -0.020 -7.447 -12.493 1.475 26 B_G26:C85_B B 26 ? B 85 ? 19 1 1 B A 5 1_555 B U 55 1_555 -0.135 -0.142 0.224 -5.646 -14.425 2.150 27 B_A27:U84_B B 27 ? B 84 ? 20 1 1 B U 6 1_555 B G 54 1_555 2.495 -0.505 0.339 -4.183 -9.993 1.769 28 B_U28:G83_B B 28 ? B 83 ? 28 1 1 B C 7 1_555 B G 53 1_555 0.490 -0.059 -0.030 3.601 -12.183 2.657 29 B_C29:G82_B B 29 ? B 82 ? 19 1 1 B U 8 1_555 B G 52 1_555 2.148 -0.483 0.120 -3.066 -11.196 2.078 30 B_U30:G81_B B 30 ? B 81 ? 28 1 1 B G 9 1_555 B C 51 1_555 -0.416 -0.247 0.191 -8.042 -16.123 -3.985 31 B_G31:C80_B B 31 ? B 80 ? 19 1 1 B U 10 1_555 B G 50 1_555 2.409 -0.611 0.476 -4.884 -16.193 -1.678 32 B_U32:G79_B B 32 ? B 79 ? 28 1 1 B C 11 1_555 B G 49 1_555 0.315 -0.080 0.232 2.159 -9.225 0.280 33 B_C33:G78_B B 33 ? B 78 ? 19 1 1 B C 13 1_555 B G 45 1_555 0.471 -0.041 -0.198 9.755 2.470 1.212 34 B_C35:G74_B B 35 ? B 74 ? 19 1 1 B C 14 1_555 B G 44 1_555 0.371 -0.102 -0.621 19.200 -6.625 2.203 35 B_C36:G73_B B 36 ? B 73 ? 19 1 1 B C 15 1_555 B G 41 1_555 0.511 -0.153 -0.375 13.114 -14.774 0.565 36 B_C37:G70_B B 37 ? B 70 ? 19 1 1 B C 16 1_555 B G 40 1_555 0.455 -0.294 0.267 1.604 -12.996 0.058 37 B_C38:G69_B B 38 ? B 69 ? 19 1 1 B A 17 1_555 B U 39 1_555 0.100 -0.179 0.131 -3.426 -20.799 -0.808 38 B_A39:U68_B B 39 ? B 68 ? 20 1 1 B G 20 1_555 B C 38 1_555 -0.202 -0.046 0.006 -9.189 -8.908 1.826 39 B_G42:C67_B B 42 ? B 67 ? 19 1 1 B A 21 1_555 B U 37 1_555 -0.177 -0.017 -0.022 -1.582 -10.330 3.516 40 B_A43:U66_B B 43 ? B 66 ? 20 1 1 B U 22 1_555 B A 36 1_555 0.114 -0.116 -0.284 10.138 -12.489 1.672 41 B_U44:A65_B B 44 ? B 65 ? 20 1 1 B C 23 1_555 B G 35 1_555 0.559 -0.210 -0.006 2.136 -10.689 1.564 42 B_C45:G64_B B 45 ? B 64 ? 19 1 1 B G 24 1_555 B C 33 1_555 -0.698 -0.256 -0.029 4.702 -4.016 -0.051 43 B_G46:C62_B B 46 ? B 62 ? 19 1 1 B C 25 1_555 B G 32 1_555 0.711 -0.286 -0.334 12.168 -11.650 1.587 44 B_C47:G61_B B 47 ? B 61 ? 19 1 1 B C 26 1_555 B G 31 1_555 0.717 -0.341 -0.200 6.292 -5.984 -1.711 45 B_C48:G60_B B 48 ? B 60 ? 19 1 1 B U 27 1_555 B G 30 1_555 1.113 -4.651 -0.358 -2.980 -3.431 -107.072 46 B_U48A:G48D_B B 48 A B 48 D ? 6 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A CCC 58 1_555 A G 3 1_555 A C 57 1_555 0.223 -1.181 3.142 -2.229 11.674 37.216 -3.049 -0.579 2.650 17.746 3.389 39.004 1 AA_G24G25:C86CCC87_AA A 24 ? A 87 ? A 25 ? A 86 ? 1 A G 3 1_555 A C 57 1_555 A G 4 1_555 A C 56 1_555 1.034 -2.151 3.318 4.527 9.546 26.255 -6.464 -1.141 2.535 20.014 -9.491 28.267 2 AA_G25G26:C85C86_AA A 25 ? A 86 ? A 26 ? A 85 ? 1 A G 4 1_555 A C 56 1_555 A A 5 1_555 A U 55 1_555 -0.069 -1.693 3.091 -0.740 4.411 33.783 -3.529 0.011 2.854 7.549 1.266 34.069 3 AA_G26A27:U84C85_AA A 26 ? A 85 ? A 27 ? A 84 ? 1 A A 5 1_555 A U 55 1_555 A U 6 1_555 A G 54 1_555 -0.137 -1.332 3.210 0.223 2.926 39.857 -2.274 0.225 3.108 4.285 -0.326 39.960 4 AA_A27U28:G83U84_AA A 27 ? A 84 ? A 28 ? A 83 ? 1 A U 6 1_555 A G 54 1_555 A C 7 1_555 A G 53 1_555 0.131 -2.147 2.836 4.976 5.697 23.406 -6.437 0.910 2.238 13.596 -11.876 24.582 5 AA_U28C29:G82G83_AA A 28 ? A 83 ? A 29 ? A 82 ? 1 A C 7 1_555 A G 53 1_555 A U 8 1_555 A G 52 1_555 0.152 -1.600 3.510 0.488 2.312 37.088 -2.836 -0.169 3.409 3.631 -0.766 37.161 6 AA_C29U30:G81G82_AA A 29 ? A 82 ? A 30 ? A 81 ? 1 A U 8 1_555 A G 52 1_555 A G 9 1_555 A C 51 1_555 -1.000 -1.712 3.112 0.735 11.188 23.557 -6.349 2.385 2.065 25.626 -1.684 26.055 7 AA_U30G31:C80G81_AA A 30 ? A 81 ? A 31 ? A 80 ? 1 A G 9 1_555 A C 51 1_555 A U 10 1_555 A G 50 1_555 0.348 -1.081 3.192 -0.204 6.517 43.458 -2.034 -0.484 3.006 8.743 0.273 43.921 8 AA_G31U32:G79C80_AA A 31 ? A 80 ? A 32 ? A 79 ? 1 A U 10 1_555 A G 50 1_555 A C 11 1_555 A G 49 1_555 0.177 -1.837 2.856 2.702 5.198 27.556 -4.778 0.157 2.480 10.758 -5.592 28.160 9 AA_U32C33:G78G79_AA A 32 ? A 79 ? A 33 ? A 78 ? 1 A C 11 1_555 A G 49 1_555 A C 13 1_555 A G 45 1_555 2.367 -0.486 2.870 5.446 -4.802 90.720 -0.256 -1.564 2.995 -3.370 -3.822 90.947 10 AA_C33C35:G74G78_AA A 33 ? A 78 ? A 35 ? A 74 ? 1 A C 13 1_555 A G 45 1_555 A C 14 1_555 A G 44 1_555 0.342 -2.504 3.380 -5.348 4.019 32.550 -5.040 -1.476 2.966 7.077 9.418 33.212 11 AA_C35C36:G73G74_AA A 35 ? A 74 ? A 36 ? A 73 ? 1 A C 14 1_555 A G 44 1_555 A C 15 1_555 A G 41 1_555 1.227 -1.748 3.576 -0.618 7.469 45.536 -2.903 -1.622 3.250 9.573 0.792 46.116 12 AA_C36C37:G70G73_AA A 36 ? A 73 ? A 37 ? A 70 ? 1 A C 15 1_555 A G 41 1_555 A C 16 1_555 A G 40 1_555 -0.480 -1.940 3.491 -6.326 9.329 30.604 -5.085 -0.246 2.834 16.968 11.506 32.567 13 AA_C37C38:G69G70_AA A 37 ? A 70 ? A 38 ? A 69 ? 1 A C 16 1_555 A G 40 1_555 A A 17 1_555 A U 39 1_555 -0.069 -1.369 3.228 5.119 8.936 32.890 -3.613 0.861 2.733 15.321 -8.777 34.422 14 AA_C38A39:U68G69_AA A 38 ? A 69 ? A 39 ? A 68 ? 1 A A 17 1_555 A U 39 1_555 A G 20 1_555 A C 38 1_555 -1.600 -1.538 3.118 -2.843 8.898 46.375 -2.590 1.781 2.880 11.166 3.568 47.256 15 AA_A39G42:C67U68_AA A 39 ? A 68 ? A 42 ? A 67 ? 1 A G 20 1_555 A C 38 1_555 A A 21 1_555 A U 37 1_555 -1.202 -2.324 2.984 -2.128 6.414 26.539 -6.252 2.095 2.452 13.691 4.543 27.371 16 AA_G42A43:U66C67_AA A 42 ? A 67 ? A 43 ? A 66 ? 1 A A 21 1_555 A U 37 1_555 A U 22 1_555 A A 36 1_555 0.053 -0.710 2.962 2.275 6.801 30.425 -2.459 0.282 2.740 12.737 -4.261 31.239 17 AA_A43U44:A65U66_AA A 43 ? A 66 ? A 44 ? A 65 ? 1 A U 22 1_555 A A 36 1_555 A C 23 1_555 A G 35 1_555 0.883 -1.604 3.417 -1.381 5.148 38.379 -3.054 -1.501 3.152 7.784 2.088 38.734 18 AA_U44C45:G64A65_AA A 44 ? A 65 ? A 45 ? A 64 ? 1 A C 23 1_555 A G 35 1_555 A G 24 1_555 A C 33 1_555 1.422 -1.554 3.252 -1.987 4.181 37.494 -2.918 -2.443 2.991 6.474 3.076 37.768 19 AA_C45G46:C62G64_AA A 45 ? A 64 ? A 46 ? A 62 ? 1 A G 24 1_555 A C 33 1_555 A C 25 1_555 A G 32 1_555 0.001 -1.476 3.185 0.317 2.575 36.512 -2.690 0.040 3.078 4.104 -0.506 36.601 20 AA_G46C47:G61C62_AA A 46 ? A 62 ? A 47 ? A 61 ? 1 A C 25 1_555 A G 32 1_555 A C 26 1_555 A G 31 1_555 -0.058 -1.954 3.460 -0.754 5.444 31.234 -4.587 -0.034 3.085 10.014 1.388 31.702 21 AA_C47C48:G60G61_AA A 47 ? A 61 ? A 48 ? A 60 ? 1 A C 26 1_555 A G 31 1_555 A U 27 1_555 A G 30 1_555 -1.564 -0.815 3.459 7.068 6.293 93.394 -0.678 1.206 3.316 4.315 -4.846 93.761 22 AA_C48U48A:G48DG60_AA A 48 ? A 60 ? A 48 A A 48 D 1 B G 2 1_555 B CCC 58 1_555 B G 3 1_555 B C 57 1_555 0.233 -1.450 3.109 2.165 10.164 35.099 -3.563 -0.105 2.612 16.414 -3.497 36.559 23 BB_G24G25:C86CCC87_BB B 24 ? B 87 ? B 25 ? B 86 ? 1 B G 3 1_555 B C 57 1_555 B G 4 1_555 B C 56 1_555 1.025 -2.080 3.255 0.836 9.783 27.345 -6.074 -1.881 2.412 19.898 -1.701 29.023 24 BB_G25G26:C85C86_BB B 25 ? B 86 ? B 26 ? B 85 ? 1 B G 4 1_555 B C 56 1_555 B A 5 1_555 B U 55 1_555 -0.394 -1.973 3.011 -2.405 5.259 33.627 -4.098 0.337 2.701 9.008 4.119 34.106 25 BB_G26A27:U84C85_BB B 26 ? B 85 ? B 27 ? B 84 ? 1 B A 5 1_555 B U 55 1_555 B U 6 1_555 B G 54 1_555 0.147 -1.318 3.221 0.212 4.603 39.988 -2.417 -0.191 3.058 6.704 -0.309 40.242 26 BB_A27U28:G83U84_BB B 27 ? B 84 ? B 28 ? B 83 ? 1 B U 6 1_555 B G 54 1_555 B C 7 1_555 B G 53 1_555 0.126 -2.174 2.830 4.966 6.470 22.351 -6.934 0.966 2.105 16.021 -12.297 23.775 27 BB_U28C29:G82G83_BB B 28 ? B 83 ? B 29 ? B 82 ? 1 B C 7 1_555 B G 53 1_555 B U 8 1_555 B G 52 1_555 0.138 -1.618 3.498 0.732 2.739 36.363 -2.985 -0.114 3.373 4.381 -1.171 36.470 28 BB_C29U30:G81G82_BB B 29 ? B 82 ? B 30 ? B 81 ? 1 B U 8 1_555 B G 52 1_555 B G 9 1_555 B C 51 1_555 -1.025 -1.720 3.140 0.736 11.016 23.186 -6.492 2.483 2.086 25.626 -1.712 25.648 29 BB_U30G31:C80G81_BB B 30 ? B 81 ? B 31 ? B 80 ? 1 B G 9 1_555 B C 51 1_555 B U 10 1_555 B G 50 1_555 0.356 -1.069 3.189 -0.610 6.483 43.433 -2.016 -0.532 3.002 8.701 0.818 43.895 30 BB_G31U32:G79C80_BB B 31 ? B 80 ? B 32 ? B 79 ? 1 B U 10 1_555 B G 50 1_555 B C 11 1_555 B G 49 1_555 0.252 -1.751 2.801 4.536 4.258 27.752 -4.370 0.345 2.518 8.738 -9.309 28.428 31 BB_U32C33:G78G79_BB B 32 ? B 79 ? B 33 ? B 78 ? 1 B C 11 1_555 B G 49 1_555 B C 13 1_555 B G 45 1_555 2.415 -0.767 3.187 3.632 -2.378 88.846 -0.499 -1.649 3.278 -1.698 -2.593 88.930 32 BB_C33C35:G74G78_BB B 33 ? B 78 ? B 35 ? B 74 ? 1 B C 13 1_555 B G 45 1_555 B C 14 1_555 B G 44 1_555 0.380 -1.982 3.167 -2.619 1.912 32.509 -3.837 -1.104 3.010 3.405 4.663 32.666 33 BB_C35C36:G73G74_BB B 35 ? B 74 ? B 36 ? B 73 ? 1 B C 14 1_555 B G 44 1_555 B C 15 1_555 B G 41 1_555 1.268 -1.750 3.452 -2.839 9.171 45.477 -2.991 -1.848 2.985 11.709 3.625 46.426 34 BB_C36C37:G70G73_BB B 36 ? B 73 ? B 37 ? B 70 ? 1 B C 15 1_555 B G 41 1_555 B C 16 1_555 B G 40 1_555 -0.465 -1.938 3.470 -6.859 9.395 30.999 -4.985 -0.336 2.816 16.851 12.304 33.060 35 BB_C37C38:G69G70_BB B 37 ? B 70 ? B 38 ? B 69 ? 1 B C 16 1_555 B G 40 1_555 B A 17 1_555 B U 39 1_555 -0.029 -1.373 3.221 3.476 9.694 32.479 -3.779 0.564 2.695 16.813 -6.028 34.031 36 BB_C38A39:U68G69_BB B 38 ? B 69 ? B 39 ? B 68 ? 1 B A 17 1_555 B U 39 1_555 B G 20 1_555 B C 38 1_555 -1.645 -1.445 3.121 -2.931 6.649 46.917 -2.301 1.821 2.993 8.292 3.655 47.445 37 BB_A39G42:C67U68_BB B 39 ? B 68 ? B 42 ? B 67 ? 1 B G 20 1_555 B C 38 1_555 B A 21 1_555 B U 37 1_555 -1.194 -2.308 2.945 -1.758 7.605 26.608 -6.319 2.147 2.282 16.090 3.719 27.710 38 BB_G42A43:U66C67_BB B 42 ? B 67 ? B 43 ? B 66 ? 1 B A 21 1_555 B U 37 1_555 B U 22 1_555 B A 36 1_555 0.070 -0.702 2.961 2.254 7.264 30.138 -2.541 0.251 2.719 13.697 -4.250 31.061 39 BB_A43U44:A65U66_BB B 43 ? B 66 ? B 44 ? B 65 ? 1 B U 22 1_555 B A 36 1_555 B C 23 1_555 B G 35 1_555 0.893 -1.591 3.428 -1.042 5.127 38.280 -3.046 -1.480 3.172 7.774 1.579 38.622 40 BB_U44C45:G64A65_BB B 44 ? B 65 ? B 45 ? B 64 ? 1 B C 23 1_555 B G 35 1_555 B G 24 1_555 B C 33 1_555 1.412 -1.566 3.269 -2.039 3.092 36.477 -2.901 -2.515 3.050 4.924 3.247 36.659 41 BB_C45G46:C62G64_BB B 45 ? B 64 ? B 46 ? B 62 ? 1 B G 24 1_555 B C 33 1_555 B C 25 1_555 B G 32 1_555 -0.039 -1.479 3.192 0.426 2.301 36.206 -2.686 0.121 3.095 3.699 -0.684 36.279 42 BB_G46C47:G61C62_BB B 46 ? B 62 ? B 47 ? B 61 ? 1 B C 25 1_555 B G 32 1_555 B C 26 1_555 B G 31 1_555 -0.308 -1.924 3.440 -1.025 6.729 31.542 -4.653 0.374 2.985 12.201 1.858 32.249 43 BB_C47C48:G60G61_BB B 47 ? B 61 ? B 48 ? B 60 ? 1 B C 26 1_555 B G 31 1_555 B U 27 1_555 B G 30 1_555 -1.358 -1.140 3.523 7.781 3.856 88.814 -0.896 1.137 3.379 2.750 -5.548 89.149 44 BB_C48U48A:G48DG60_BB B 48 ? B 60 ? B 48 A B 48 D # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'French National Research Agency' France ANR-06-BLAN-0072 1 'French National Research Agency' France ANR-12-BSV5-0018 2 'French National Research Agency' France ANR-10-INSB-05-01 3 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5LYS _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5LYU _atom_sites.fract_transf_matrix[1][1] 0.021839 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003478 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020929 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014746 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL MG N NA O P # loop_