HEADER TOXIN 29-SEP-16 5LZG TITLE CHOLERA TOXIN EL TOR B-PENTAMER IN COMPLEX WITH INHIBITOR PC262 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLERA ENTEROTOXIN SUBUNIT B; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: CHOLERA ENTEROTOXIN B CHAIN,CHOLERA ENTEROTOXIN GAMMA CHAIN, COMPND 5 CHOLERAGENOID; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39315 SOURCE 3 / EL TOR INABA N16961); SOURCE 4 ORGANISM_TAXID: 243277; SOURCE 5 STRAIN: ATCC 39315 / EL TOR INABA N16961; SOURCE 6 GENE: CTXB, TOXB, VC_1456; SOURCE 7 EXPRESSION_SYSTEM: VIBRIO SP.; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 678 KEYWDS CHOLERA TOXIN B-PENTAMER, INHIBITOR, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR J.E.HEGGELUND,T.MARTINSEN,U.KRENGEL REVDAT 3 17-JAN-24 5LZG 1 REMARK REVDAT 2 07-JUN-17 5LZG 1 JRNL REVDAT 1 31-MAY-17 5LZG 0 JRNL AUTH J.E.HEGGELUND,A.MACKENZIE,T.MARTINSEN,J.BENJAMIN HEIM, JRNL AUTH 2 P.CHESHEV,A.BERNARDI,U.KRENGEL JRNL TITL TOWARDS NEW CHOLERA PROPHYLACTICS AND TREATMENT: CRYSTAL JRNL TITL 2 STRUCTURES OF BACTERIAL ENTEROTOXINS IN COMPLEX WITH GM1 JRNL TITL 3 MIMICS. JRNL REF SCI REP V. 7 2326 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28539625 JRNL DOI 10.1038/S41598-017-02179-0 REMARK 2 REMARK 2 RESOLUTION. 1.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 74.4 REMARK 3 NUMBER OF REFLECTIONS : 132437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6982 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.13 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 783 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 5.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.4470 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.4130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4085 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 248 REMARK 3 SOLVENT ATOMS : 575 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79000 REMARK 3 B22 (A**2) : -0.58000 REMARK 3 B33 (A**2) : 1.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.431 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4569 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4393 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6218 ; 1.899 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10173 ; 1.258 ; 3.017 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 547 ; 7.102 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;42.016 ;25.126 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 816 ;11.485 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.864 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 728 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4988 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 996 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2103 ; 0.686 ; 0.837 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2101 ; 0.662 ; 0.834 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2632 ; 1.088 ; 1.247 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2633 ; 1.089 ; 1.248 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2466 ; 1.025 ; 1.092 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2467 ; 1.025 ; 1.093 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3571 ; 1.590 ; 1.589 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5237 ; 4.213 ;12.249 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5238 ; 4.213 ;12.256 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 103 REMARK 3 ORIGIN FOR THE GROUP (A): -18.9508 4.7725 11.7798 REMARK 3 T TENSOR REMARK 3 T11: 0.0362 T22: 0.0304 REMARK 3 T33: 0.1647 T12: -0.0037 REMARK 3 T13: -0.0746 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.8625 L22: 0.7113 REMARK 3 L33: 0.4998 L12: 0.0502 REMARK 3 L13: 0.2136 L23: -0.0595 REMARK 3 S TENSOR REMARK 3 S11: -0.0818 S12: 0.0658 S13: 0.1727 REMARK 3 S21: -0.0473 S22: 0.0353 S23: 0.1716 REMARK 3 S31: -0.0123 S32: 0.0057 S33: 0.0465 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 103 REMARK 3 ORIGIN FOR THE GROUP (A): -3.5539 18.6030 19.2077 REMARK 3 T TENSOR REMARK 3 T11: 0.0446 T22: 0.0044 REMARK 3 T33: 0.2340 T12: 0.0054 REMARK 3 T13: -0.0925 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.6580 L22: 0.8164 REMARK 3 L33: 0.3917 L12: 0.5015 REMARK 3 L13: 0.2146 L23: -0.0981 REMARK 3 S TENSOR REMARK 3 S11: -0.1135 S12: -0.0088 S13: 0.4036 REMARK 3 S21: -0.0157 S22: 0.0297 S23: 0.1568 REMARK 3 S31: -0.0601 S32: -0.0315 S33: 0.0838 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 103 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9918 6.5841 27.2379 REMARK 3 T TENSOR REMARK 3 T11: 0.0382 T22: 0.0406 REMARK 3 T33: 0.1031 T12: -0.0091 REMARK 3 T13: -0.0568 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.1146 L22: 0.6812 REMARK 3 L33: 0.3225 L12: 0.2720 REMARK 3 L13: 0.0664 L23: 0.1845 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: -0.1136 S13: 0.0992 REMARK 3 S21: -0.0086 S22: -0.0247 S23: -0.0079 REMARK 3 S31: -0.0220 S32: 0.0022 S33: 0.0199 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 103 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8041 -14.5912 24.7914 REMARK 3 T TENSOR REMARK 3 T11: 0.0307 T22: 0.0178 REMARK 3 T33: 0.1119 T12: -0.0023 REMARK 3 T13: -0.0497 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 1.9109 L22: 0.7681 REMARK 3 L33: 0.3625 L12: 0.1990 REMARK 3 L13: 0.2365 L23: 0.2557 REMARK 3 S TENSOR REMARK 3 S11: 0.0276 S12: -0.1259 S13: -0.2696 REMARK 3 S21: 0.0452 S22: -0.0009 S23: -0.0536 REMARK 3 S31: 0.0177 S32: 0.0089 S33: -0.0267 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 103 REMARK 3 ORIGIN FOR THE GROUP (A): -11.8495 -15.7968 15.1420 REMARK 3 T TENSOR REMARK 3 T11: 0.0273 T22: 0.0194 REMARK 3 T33: 0.1088 T12: -0.0042 REMARK 3 T13: -0.0497 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.6394 L22: 0.6481 REMARK 3 L33: 0.3117 L12: 0.3489 REMARK 3 L13: 0.2340 L23: 0.1323 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: 0.0748 S13: -0.1637 REMARK 3 S21: -0.0213 S22: 0.0065 S23: 0.0194 REMARK 3 S31: 0.0069 S32: 0.0092 S33: -0.0101 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LZG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001378. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.991872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 139423 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.120 REMARK 200 RESOLUTION RANGE LOW (A) : 47.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 74.3 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 13.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3CHB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES/IMIDAZOLE BUFFER, PH 6.5, REMARK 280 10% PEG 1000, 10 % PEG 3350, 10 % MPD, 0.03 M DIVALENT CATIONS, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.94000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.14550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.94000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.14550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 70 NH1 ARG E 67 2.12 REMARK 500 NH1 ARG C 67 OD1 ASP D 70 2.14 REMARK 500 NH1 ARG D 67 OD1 ASP E 70 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 27 CE1 TYR B 27 CZ -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG C 35 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG D 67 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG E 35 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG E 67 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 34 -4.72 78.21 REMARK 500 PRO A 93 154.97 -49.75 REMARK 500 LYS B 34 -1.11 76.52 REMARK 500 ASN C 21 52.05 39.76 REMARK 500 LYS C 34 -0.23 75.93 REMARK 500 GLU C 83 -70.94 -82.71 REMARK 500 GLU D 83 -70.73 -82.18 REMARK 500 LYS E 34 -2.73 77.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7BN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7BN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7BN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7BN D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7BN E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD E 202 DBREF 5LZG A 1 103 UNP P01556 CHTB_VIBCH 22 124 DBREF 5LZG B 1 103 UNP P01556 CHTB_VIBCH 22 124 DBREF 5LZG C 1 103 UNP P01556 CHTB_VIBCH 22 124 DBREF 5LZG D 1 103 UNP P01556 CHTB_VIBCH 22 124 DBREF 5LZG E 1 103 UNP P01556 CHTB_VIBCH 22 124 SEQRES 1 A 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 A 103 ASN THR GLN ILE TYR THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 A 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 A 103 ILE THR PHE LYS ASN GLY ALA ILE PHE GLN VAL GLU VAL SEQRES 5 A 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 A 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 A 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 A 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 B 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 B 103 ASN THR GLN ILE TYR THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 B 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 B 103 ILE THR PHE LYS ASN GLY ALA ILE PHE GLN VAL GLU VAL SEQRES 5 B 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 B 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 B 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 B 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 C 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 C 103 ASN THR GLN ILE TYR THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 C 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 C 103 ILE THR PHE LYS ASN GLY ALA ILE PHE GLN VAL GLU VAL SEQRES 5 C 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 C 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 C 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 C 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 D 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 D 103 ASN THR GLN ILE TYR THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 D 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 D 103 ILE THR PHE LYS ASN GLY ALA ILE PHE GLN VAL GLU VAL SEQRES 5 D 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 D 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 D 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 D 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN SEQRES 1 E 103 THR PRO GLN ASN ILE THR ASP LEU CYS ALA GLU TYR HIS SEQRES 2 E 103 ASN THR GLN ILE TYR THR LEU ASN ASP LYS ILE PHE SER SEQRES 3 E 103 TYR THR GLU SER LEU ALA GLY LYS ARG GLU MET ALA ILE SEQRES 4 E 103 ILE THR PHE LYS ASN GLY ALA ILE PHE GLN VAL GLU VAL SEQRES 5 E 103 PRO GLY SER GLN HIS ILE ASP SER GLN LYS LYS ALA ILE SEQRES 6 E 103 GLU ARG MET LYS ASP THR LEU ARG ILE ALA TYR LEU THR SEQRES 7 E 103 GLU ALA LYS VAL GLU LYS LEU CYS VAL TRP ASN ASN LYS SEQRES 8 E 103 THR PRO HIS ALA ILE ALA ALA ILE SER MET ALA ASN HET 7BN A 201 43 HET TRS A 202 8 HET IMD A 203 5 HET 7BN B 201 43 HET 7BN C 201 43 HET PEG C 202 7 HET 7BN D 201 43 HET IMD D 202 5 HET 7BN E 201 43 HET MRD E 202 8 HETNAM 7BN (2~{R},4~{S},5~{R},6~{R})-5-ACETAMIDO-2-[4-[3-[2- HETNAM 2 7BN [(2~{S},3~{R},4~{R},5~{R},6~{R})-6-(HYDROXYMETHYL)-3, HETNAM 3 7BN 4,5-TRIS(OXIDANYL)OXAN-2-YL]ETHYLAMINO]-3- HETNAM 4 7BN OXIDANYLIDENE-PROPYL]-1,2,3-TRIAZOL-1-YL]-4-OXIDANYL- HETNAM 5 7BN 6-[(1~{R},2~{R})-1,2,3-TRIS(OXIDANYL)PROPYL]OXANE-2- HETNAM 6 7BN CARBOXYLIC ACID HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM IMD IMIDAZOLE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETSYN TRS TRIS BUFFER FORMUL 6 7BN 5(C24 H39 N5 O14) FORMUL 7 TRS C4 H12 N O3 1+ FORMUL 8 IMD 2(C3 H5 N2 1+) FORMUL 11 PEG C4 H10 O3 FORMUL 15 MRD C6 H14 O2 FORMUL 16 HOH *575(H2 O) HELIX 1 1 ILE A 5 GLU A 11 1 7 HELIX 2 2 ASP A 59 THR A 78 5 20 HELIX 3 3 ILE B 5 GLU B 11 1 7 HELIX 4 4 ASP B 59 LEU B 77 5 19 HELIX 5 5 ILE C 5 GLU C 11 1 7 HELIX 6 6 ASP C 59 THR C 78 5 20 HELIX 7 7 ILE D 5 GLU D 11 1 7 HELIX 8 8 ASP D 59 THR D 78 5 20 HELIX 9 9 ILE E 5 GLU E 11 1 7 HELIX 10 10 ASP E 59 THR E 78 5 20 SHEET 1 A 3 THR A 15 THR A 19 0 SHEET 2 A 3 VAL A 82 TRP A 88 -1 N VAL A 87 O GLN A 16 SHEET 3 A 3 ALA A 98 MET A 101 -1 N SER A 100 O GLU A 83 SHEET 1 B 3 SER A 26 SER A 30 0 SHEET 2 B 3 MET A 37 THR A 41 -1 N THR A 41 O SER A 26 SHEET 3 B 3 ILE A 47 VAL A 50 -1 N VAL A 50 O ALA A 38 SHEET 1 C 3 THR B 15 THR B 19 0 SHEET 2 C 3 VAL B 82 TRP B 88 -1 N VAL B 87 O GLN B 16 SHEET 3 C 3 ALA B 98 MET B 101 -1 N SER B 100 O GLU B 83 SHEET 1 D 3 SER B 26 SER B 30 0 SHEET 2 D 3 MET B 37 THR B 41 -1 N THR B 41 O SER B 26 SHEET 3 D 3 ILE B 47 VAL B 50 -1 N VAL B 50 O ALA B 38 SHEET 1 E 3 THR C 15 THR C 19 0 SHEET 2 E 3 VAL C 82 TRP C 88 -1 N VAL C 87 O GLN C 16 SHEET 3 E 3 ALA C 98 MET C 101 -1 N SER C 100 O GLU C 83 SHEET 1 F 3 SER C 26 SER C 30 0 SHEET 2 F 3 MET C 37 THR C 41 -1 N THR C 41 O SER C 26 SHEET 3 F 3 ILE C 47 VAL C 50 -1 N VAL C 50 O ALA C 38 SHEET 1 G 3 THR D 15 THR D 19 0 SHEET 2 G 3 VAL D 82 TRP D 88 -1 N VAL D 87 O GLN D 16 SHEET 3 G 3 ALA D 98 MET D 101 -1 N SER D 100 O GLU D 83 SHEET 1 H 3 SER D 26 SER D 30 0 SHEET 2 H 3 MET D 37 THR D 41 -1 N THR D 41 O SER D 26 SHEET 3 H 3 ILE D 47 VAL D 50 -1 N VAL D 50 O ALA D 38 SHEET 1 I 3 THR E 15 THR E 19 0 SHEET 2 I 3 VAL E 82 TRP E 88 -1 N VAL E 87 O GLN E 16 SHEET 3 I 3 ALA E 98 MET E 101 -1 N SER E 100 O GLU E 83 SHEET 1 J 3 SER E 26 SER E 30 0 SHEET 2 J 3 MET E 37 THR E 41 -1 N THR E 41 O SER E 26 SHEET 3 J 3 ILE E 47 VAL E 50 -1 N VAL E 50 O ALA E 38 SSBOND 1 CYS A 9 CYS A 86 1555 1555 2.05 SSBOND 2 CYS B 9 CYS B 86 1555 1555 2.06 SSBOND 3 CYS C 9 CYS C 86 1555 1555 2.08 SSBOND 4 CYS D 9 CYS D 86 1555 1555 2.05 SSBOND 5 CYS E 9 CYS E 86 1555 1555 2.05 CISPEP 1 THR A 92 PRO A 93 0 -15.35 CISPEP 2 THR B 92 PRO B 93 0 -13.83 CISPEP 3 THR C 92 PRO C 93 0 -1.54 CISPEP 4 THR D 92 PRO D 93 0 -2.68 CISPEP 5 THR D 92 PRO D 93 0 -13.34 CISPEP 6 THR E 92 PRO E 93 0 -14.79 SITE 1 AC1 24 GLU A 11 TYR A 12 HIS A 13 GLU A 51 SITE 2 AC1 24 GLN A 56 HIS A 57 ILE A 58 GLN A 61 SITE 3 AC1 24 TRP A 88 ASN A 90 LYS A 91 IMD A 203 SITE 4 AC1 24 HOH A 323 HOH A 339 HOH A 346 HOH A 348 SITE 5 AC1 24 HOH A 350 HOH A 356 HOH A 357 HOH A 366 SITE 6 AC1 24 HOH A 375 GLY B 33 LYS B 34 HOH C 314 SITE 1 AC2 8 TYR A 76 LEU A 77 GLU A 79 HOH A 304 SITE 2 AC2 8 HOH A 314 THR E 78 GLU E 79 ALA E 80 SITE 1 AC3 3 ALA A 10 GLU A 11 7BN A 201 SITE 1 AC4 20 GLU B 11 TYR B 12 HIS B 13 GLU B 51 SITE 2 AC4 20 GLN B 56 HIS B 57 ILE B 58 GLN B 61 SITE 3 AC4 20 TRP B 88 ASN B 90 LYS B 91 HOH B 308 SITE 4 AC4 20 HOH B 309 HOH B 316 HOH B 331 HOH B 339 SITE 5 AC4 20 HOH B 345 HOH B 373 GLY C 33 HOH C 362 SITE 1 AC5 26 GLU C 11 TYR C 12 HIS C 13 GLU C 51 SITE 2 AC5 26 GLN C 56 HIS C 57 ILE C 58 GLN C 61 SITE 3 AC5 26 TRP C 88 ASN C 90 LYS C 91 PEG C 202 SITE 4 AC5 26 HOH C 312 HOH C 316 HOH C 319 HOH C 330 SITE 5 AC5 26 HOH C 335 HOH C 337 HOH C 346 HOH C 353 SITE 6 AC5 26 HOH C 364 HOH C 368 HOH C 386 GLY D 33 SITE 7 AC5 26 HOH D 373 TYR E 18 SITE 1 AC6 5 ALA C 10 GLU C 11 TYR C 12 HIS C 13 SITE 2 AC6 5 7BN C 201 SITE 1 AC7 23 TYR A 18 GLU D 11 TYR D 12 HIS D 13 SITE 2 AC7 23 GLU D 51 GLN D 56 ILE D 58 GLN D 61 SITE 3 AC7 23 TRP D 88 ASN D 90 LYS D 91 HOH D 305 SITE 4 AC7 23 HOH D 308 HOH D 322 HOH D 324 HOH D 325 SITE 5 AC7 23 HOH D 329 HOH D 335 HOH D 350 HOH D 351 SITE 6 AC7 23 HOH D 372 GLY E 33 HOH E 373 SITE 1 AC8 4 HIS B 13 ALA D 10 HIS D 13 HOH D 354 SITE 1 AC9 23 GLY A 33 LYS A 34 GLU E 11 TYR E 12 SITE 2 AC9 23 HIS E 13 GLU E 51 GLN E 56 HIS E 57 SITE 3 AC9 23 ILE E 58 GLN E 61 TRP E 88 ASN E 90 SITE 4 AC9 23 LYS E 91 HOH E 301 HOH E 303 HOH E 306 SITE 5 AC9 23 HOH E 309 HOH E 312 HOH E 321 HOH E 326 SITE 6 AC9 23 HOH E 360 HOH E 372 HOH E 393 SITE 1 AD1 3 LEU E 77 HOH E 305 HOH E 331 CRYST1 101.880 66.291 77.407 90.00 105.74 90.00 C 1 2 1 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009815 0.000000 0.002767 0.00000 SCALE2 0.000000 0.015085 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013422 0.00000