HEADER CELL ADHESION 04-OCT-16 5M0A TITLE SOLUTION STRUCTURE OF ISOLATED 15TH FIBRONECTIN III DOMAIN FROM HUMAN TITLE 2 FIBRONECTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRONECTIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: 15TH FIBRONECTIN III DOMAIN, UNP RESIDUES 2108-2193; COMPND 5 SYNONYM: FN,COLD-INSOLUBLE GLOBULIN,CIG; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: SEQUENCE NUMBERING STARTS FROM 395. CONSTRUCT IS COMPND 8 ACTUALLY FROM RESIDUE 2109 OF HUMAN FIBRONECTIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FN1, FN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FIBRONECTIN III DOMAIN, BETA SHEET PROTEIN, INFLAMMATION, INTEGRIN KEYWDS 2 BINDING, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.P.WALTHO,M.J.CLIFF,E.BLUMSON,M.HUMPHRIES REVDAT 2 08-MAY-19 5M0A 1 REMARK REVDAT 1 29-NOV-17 5M0A 0 JRNL AUTH J.P.WALTHO,M.J.CLIFF,E.BLUMSON,M.HUMPHRIES JRNL TITL SOLUTION STRUCTURE OF ISOLATED 15TH FIBRONECTIN III DOMAIN JRNL TITL 2 FROM HUMAN FIBRONECTIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5M0A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001623. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 161; 161 REMARK 210 PRESSURE : 1 BAR; 1 BAR REMARK 210 SAMPLE CONTENTS : 10 MM TRIS, 150 MM SODIUM REMARK 210 CHLORIDE, 0.02 UG/ML TSP, 1 MM REMARK 210 SODIUM AZIDE, 0.35 MM [U-13C; U- REMARK 210 15N] 15TH FIBRONECTIN III DOMAIN REMARK 210 FROM HUMAN FIBRONECTIN, 0.5 MM REMARK 210 EDTA, 90% H2O/10% D2O; 10 MM [U- REMARK 210 2H] TRIS, 0.35 MM [U-13C; U-15N] REMARK 210 15TH FIBRONECTIN III DOMAIN FROM REMARK 210 HUMAN FIBRONECTIN, 150 MM SODIUM REMARK 210 CHLORIDE, 1 MM SODIUM AZIDE, REMARK 210 0.02 UG/ML TSP, 0.5 MM EDTA, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D HN(CO)CA; 3D HNCACB; REMARK 210 3D HN(COCA)CB; 3D HNCO; 3D REMARK 210 HNCACO; 2D 1H-15N HSQC; 2D 1H- REMARK 210 13C HSQC ALIPHATIC; 2D 1H-13C REMARK 210 TROSY AROMATIC; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N TOCSY; 3D REMARK 210 1H-13C TOCSY; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCEIII REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2.4.0, TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 418 H LEU A 462 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 396 -55.83 163.75 REMARK 500 1 GLN A 414 119.70 99.41 REMARK 500 1 ASP A 464 70.28 39.32 REMARK 500 1 GLN A 465 -21.22 57.57 REMARK 500 1 ASN A 479 36.26 -176.61 REMARK 500 2 GLU A 401 -61.59 -105.51 REMARK 500 2 ALA A 402 42.09 -80.79 REMARK 500 2 PHE A 413 -80.71 -84.61 REMARK 500 2 GLN A 414 122.15 162.18 REMARK 500 2 ASP A 415 46.55 37.74 REMARK 500 2 ASP A 464 73.34 39.58 REMARK 500 2 GLN A 465 -19.60 58.19 REMARK 500 2 ASN A 479 -15.77 -156.18 REMARK 500 3 ALA A 396 -35.60 162.59 REMARK 500 3 PHE A 413 -81.44 -87.75 REMARK 500 3 GLN A 414 115.77 162.22 REMARK 500 3 ASP A 415 46.87 38.09 REMARK 500 3 ASP A 464 73.18 42.04 REMARK 500 3 GLN A 465 -21.10 59.23 REMARK 500 3 ASN A 479 28.90 -168.93 REMARK 500 4 ALA A 396 -56.89 164.09 REMARK 500 4 THR A 398 33.51 -143.36 REMARK 500 4 GLN A 414 115.77 85.89 REMARK 500 4 ASP A 464 70.79 71.63 REMARK 500 4 GLN A 465 5.88 53.02 REMARK 500 4 ASN A 479 22.50 -176.96 REMARK 500 5 ALA A 396 50.54 -149.92 REMARK 500 5 ALA A 402 37.02 -95.59 REMARK 500 5 ASP A 464 48.03 71.42 REMARK 500 5 ASN A 479 -26.59 179.13 REMARK 500 6 ALA A 396 39.70 -140.94 REMARK 500 6 ASP A 464 72.14 40.00 REMARK 500 6 GLN A 465 -4.62 52.33 REMARK 500 6 ASN A 479 31.71 169.55 REMARK 500 7 PHE A 413 -79.76 -84.31 REMARK 500 7 GLN A 414 111.25 167.45 REMARK 500 7 ASP A 415 46.93 39.70 REMARK 500 7 ASP A 464 70.06 72.00 REMARK 500 7 GLN A 465 5.99 54.98 REMARK 500 7 ASN A 479 20.62 -178.33 REMARK 500 8 ALA A 396 -35.05 79.60 REMARK 500 8 GLN A 414 119.40 95.20 REMARK 500 8 ASP A 415 38.63 34.99 REMARK 500 8 ASP A 464 70.58 70.51 REMARK 500 8 GLN A 465 -16.07 66.39 REMARK 500 8 ASN A 479 26.80 171.42 REMARK 500 9 ALA A 396 45.84 -141.96 REMARK 500 9 ALA A 402 36.60 -92.23 REMARK 500 9 PHE A 413 -82.75 -82.90 REMARK 500 9 GLN A 414 128.33 160.43 REMARK 500 REMARK 500 THIS ENTRY HAS 126 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34048 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF ISOLATED 15TH FIBRONECTIN III DOMAIN FROM REMARK 900 HUMAN FIBRONECTIN DBREF 5M0A A 395 480 UNP P02751 FINC_HUMAN 2108 2193 SEQADV 5M0A ILE A 457 UNP P02751 VAL 2170 VARIANT SEQRES 1 A 86 ASN ALA SER THR GLY GLN GLU ALA LEU SER GLN THR THR SEQRES 2 A 86 ILE SER TRP ALA PRO PHE GLN ASP THR SER GLU TYR ILE SEQRES 3 A 86 ILE SER CYS HIS PRO VAL GLY THR ASP GLU GLU PRO LEU SEQRES 4 A 86 GLN PHE ARG VAL PRO GLY THR SER THR SER ALA THR LEU SEQRES 5 A 86 THR GLY LEU THR ARG GLY ALA THR TYR ASN ILE ILE VAL SEQRES 6 A 86 GLU ALA LEU LYS ASP GLN GLN ARG HIS LYS VAL ARG GLU SEQRES 7 A 86 GLU VAL VAL THR VAL GLY ASN SER SHEET 1 AA1 2 LEU A 403 SER A 409 0 SHEET 2 AA1 2 SER A 443 THR A 450 -1 O ALA A 444 N ILE A 408 SHEET 1 AA2 4 LEU A 433 PRO A 438 0 SHEET 2 AA2 4 GLU A 418 VAL A 426 -1 N ILE A 421 O PHE A 435 SHEET 3 AA2 4 THR A 454 LYS A 463 -1 O LEU A 462 N GLU A 418 SHEET 4 AA2 4 GLN A 466 THR A 476 -1 O ARG A 471 N VAL A 459 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1