HEADER VIRAL PROTEIN 09-OCT-16 5M1Q TITLE CRYSTAL STRUCTURE OF THE LARGE TERMINASE NUCLEASE FROM THERMOPHILIC TITLE 2 PHAGE G20C WITH BOUND ZINC COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHAGE TERMINASE LARGE SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SCIENTIFIC_NAME: 'THERMUS PHAGE G20C' COMPND 6 NCBI_TAXONOMY_ID: 1406341 THE SAME AS ENTRY.ID 4XVN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS PHAGE G20C; SOURCE 3 ORGANISM_TAXID: 1406341; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LARGE TERMINASE, NUCLEASE DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.G.XU,H.T.JENKINS,M.CHECHIK,E.V.BLAGOVA,S.J.GREIVE,A.A.ANTSON REVDAT 3 03-MAY-17 5M1Q 1 JRNL REVDAT 2 01-FEB-17 5M1Q 1 JRNL REVDAT 1 26-OCT-16 5M1Q 0 JRNL AUTH R.G.XU,H.T.JENKINS,M.CHECHIK,E.V.BLAGOVA,A.LOPATINA, JRNL AUTH 2 E.KLIMUK,L.MINAKHIN,K.SEVERINOV,S.J.GREIVE,A.A.ANTSON JRNL TITL VIRAL GENOME PACKAGING TERMINASE CLEAVES DNA USING THE JRNL TITL 2 CANONICAL RUVC-LIKE TWO-METAL CATALYSIS MECHANISM. JRNL REF NUCLEIC ACIDS RES. V. 45 3580 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 28100693 JRNL DOI 10.1093/NAR/GKW1354 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 32017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1603 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2343 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1306 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -0.90000 REMARK 3 B12 (A**2) : 0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1373 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1285 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1872 ; 1.271 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2949 ; 0.836 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 178 ; 6.102 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 62 ;37.612 ;24.839 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 222 ;10.573 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;17.970 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 216 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1594 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 303 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 706 ; 1.447 ; 2.274 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 705 ; 1.446 ; 2.272 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 886 ; 2.376 ; 3.389 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5M1Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33635 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 45.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 1.29100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: IN HOUSE MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M ZINC CHLORIDE, 0.1 M MES PH REMARK 280 6.0, 20% PEG 6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.26400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.13200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.19800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 15.06600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.33000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -114.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 297 REMARK 465 ARG A 412 REMARK 465 THR A 413 REMARK 465 ALA A 414 REMARK 465 SER A 415 REMARK 465 GLY A 416 REMARK 465 ASN A 417 REMARK 465 GLN A 418 REMARK 465 VAL A 419 REMARK 465 MET A 420 REMARK 465 ARG A 421 REMARK 465 ALA A 422 REMARK 465 TYR A 423 REMARK 465 GLY A 424 REMARK 465 ARG A 425 REMARK 465 GLY A 443 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 298 CG OD1 ND2 REMARK 470 TRP A 325 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 325 CZ3 CH2 REMARK 470 ASP A 353 CG OD1 OD2 REMARK 470 GLU A 357 CG CD OE1 OE2 REMARK 470 ASP A 360 CG OD1 OD2 REMARK 470 ARG A 409 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 411 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 260 79.65 -102.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 264 OD1 REMARK 620 2 HOH A 691 O 98.4 REMARK 620 3 GLU A 378 OE2 75.0 24.1 REMARK 620 4 HOH A 675 O 172.2 74.4 97.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 264 OD2 REMARK 620 2 GLU A 378 OE1 65.2 REMARK 620 3 HOH A 675 O 140.3 88.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 294 OD2 REMARK 620 2 ASP A 429 OD1 97.9 REMARK 620 3 HOH A 602 O 73.8 83.4 REMARK 620 4 HOH A 617 O 178.1 80.5 104.9 REMARK 620 5 HOH A 646 O 92.5 98.2 166.3 88.8 REMARK 620 6 HOH A 649 O 90.4 163.5 85.3 90.9 95.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 300 OD1 REMARK 620 2 HIS A 427 ND1 97.9 REMARK 620 3 ASP A 429 OD2 107.6 108.7 REMARK 620 4 HOH A 694 O 126.1 105.5 109.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 337 OE2 REMARK 620 2 HIS A 341 NE2 122.8 REMARK 620 3 HOH A 624 O 107.4 101.5 REMARK 620 4 GLU A 389 OE2 93.3 39.7 87.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5M1P RELATED DB: PDB REMARK 900 5M1P CONTAINS THE SAME PROTEIN WITH METAL IONS REMARK 900 RELATED ID: 5M1O RELATED DB: PDB REMARK 900 5M1O CONTAINS THE SAME PROTEIN WITH METAL IONS REMARK 900 RELATED ID: 5M1N RELATED DB: PDB REMARK 900 5M1N CONTAINS THE SAME PROTEIN WITH METAL IONS REMARK 900 RELATED ID: 5M1K RELATED DB: PDB REMARK 900 5M1K CONTAINS THE SAME PROTEIN WITH METAL IONS REMARK 900 RELATED ID: 5M1F RELATED DB: PDB REMARK 900 5M1F CONTAINS THE SAME PROTEIN WITHOUT METAL IONS DBREF 5M1Q A 257 443 PDB 5M1Q 5M1Q 257 443 SEQRES 1 A 187 ASN SER VAL PHE SER GLY LEU ASP MET LEU ILE LEU LEU SEQRES 2 A 187 PRO TYR GLU ARG ARG GLY THR ARG LEU VAL VAL GLU ASP SEQRES 3 A 187 TYR ARG PRO ASP HIS ILE TYR CYS ILE GLY ALA ASP PHE SEQRES 4 A 187 GLY LYS ASN GLN ASP TYR SER VAL PHE SER VAL LEU ASP SEQRES 5 A 187 LEU ASP THR GLY ALA ILE ALA CYS LEU GLU ARG MET ASN SEQRES 6 A 187 GLY ALA THR TRP SER ASP GLN VAL ALA ARG LEU LYS ALA SEQRES 7 A 187 LEU SER GLU ASP TYR GLY HIS ALA TYR VAL VAL ALA ASP SEQRES 8 A 187 THR TRP GLY VAL GLY ASP ALA ILE ALA GLU GLU LEU ASP SEQRES 9 A 187 ALA GLN GLY ILE ASN TYR THR PRO LEU PRO VAL LYS SER SEQRES 10 A 187 SER SER VAL LYS GLU GLN LEU ILE SER ASN LEU ALA LEU SEQRES 11 A 187 LEU MET GLU LYS GLY GLN VAL ALA VAL PRO ASN ASP LYS SEQRES 12 A 187 THR ILE LEU ASP GLU LEU ARG ASN PHE ARG TYR TYR ARG SEQRES 13 A 187 THR ALA SER GLY ASN GLN VAL MET ARG ALA TYR GLY ARG SEQRES 14 A 187 GLY HIS ASP ASP ILE VAL MET SER LEU ALA LEU ALA TYR SEQRES 15 A 187 SER GLN TYR GLU GLY HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET ZN A 504 2 HETNAM ZN ZINC ION FORMUL 2 ZN 4(ZN 2+) FORMUL 6 HOH *103(H2 O) HELIX 1 AA1 GLY A 262 LEU A 266 5 5 HELIX 2 AA2 THR A 324 TYR A 339 1 16 HELIX 3 AA3 ASP A 353 GLN A 362 1 10 HELIX 4 AA4 SER A 373 LYS A 390 1 18 HELIX 5 AA5 ASP A 398 ASN A 407 1 10 HELIX 6 AA6 ASP A 428 SER A 439 1 12 SHEET 1 AA1 2 ILE A 267 LEU A 269 0 SHEET 2 AA1 2 ALA A 394 PRO A 396 1 O VAL A 395 N LEU A 269 SHEET 1 AA2 7 GLU A 272 ARG A 274 0 SHEET 2 AA2 7 ARG A 277 VAL A 279 -1 O ARG A 277 N ARG A 274 SHEET 3 AA2 7 ALA A 313 MET A 320 -1 O LEU A 317 N LEU A 278 SHEET 4 AA2 7 SER A 302 ASP A 308 -1 N VAL A 306 O CYS A 316 SHEET 5 AA2 7 TYR A 289 ASP A 294 -1 N CYS A 290 O LEU A 307 SHEET 6 AA2 7 TYR A 343 ALA A 346 1 O VAL A 345 N ILE A 291 SHEET 7 AA2 7 TYR A 366 PRO A 368 1 O THR A 367 N VAL A 344 LINK OD1 ASP A 264 ZN A ZN A 504 1555 1555 1.97 LINK OD2 ASP A 264 ZN B ZN A 504 1555 1555 2.27 LINK OD2AASP A 294 ZN ZN A 503 1555 1555 2.16 LINK OD1 ASP A 300 ZN ZN A 501 1555 1555 2.01 LINK OE2 GLU A 337 ZN ZN A 502 1555 1555 1.88 LINK NE2 HIS A 341 ZN ZN A 502 1555 1555 2.11 LINK ND1 HIS A 427 ZN ZN A 501 1555 1555 2.18 LINK OD1 ASP A 429 ZN ZN A 503 1555 1555 2.01 LINK OD2 ASP A 429 ZN ZN A 501 1555 1555 2.10 LINK ZN ZN A 501 O HOH A 694 1555 1555 2.21 LINK ZN ZN A 502 O HOH A 624 1555 1555 2.16 LINK ZN ZN A 503 O HOH A 602 1555 1555 1.97 LINK ZN ZN A 503 O HOH A 617 1555 1555 2.27 LINK ZN ZN A 503 O HOH A 646 1555 1555 2.06 LINK ZN ZN A 503 O HOH A 649 1555 1555 1.96 LINK ZN A ZN A 504 O HOH A 691 1555 1555 2.39 LINK OE1 GLU A 378 ZN B ZN A 504 1555 6554 2.20 LINK OE2 GLU A 378 ZN A ZN A 504 1555 6554 2.19 LINK OE2 GLU A 389 ZN ZN A 502 1555 6654 2.04 LINK ZN A ZN A 504 O HOH A 675 1555 5555 2.00 LINK ZN B ZN A 504 O HOH A 675 1555 5555 2.52 SITE 1 AC1 4 ASP A 300 HIS A 427 ASP A 429 HOH A 694 SITE 1 AC2 4 GLU A 337 HIS A 341 GLU A 389 HOH A 624 SITE 1 AC3 6 ASP A 294 ASP A 429 HOH A 602 HOH A 617 SITE 2 AC3 6 HOH A 646 HOH A 649 SITE 1 AC4 5 ASP A 264 GLU A 378 HOH A 675 HOH A 686 SITE 2 AC4 5 HOH A 691 CRYST1 60.983 60.983 90.396 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016398 0.009467 0.000000 0.00000 SCALE2 0.000000 0.018935 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011062 0.00000