HEADER HYDROLASE 11-OCT-16 5M1V OBSLTE 12-DEC-18 5M1V 5MK5 TITLE STRUCTURES OF N-TERMINAL NDM MOTIF OF HUMAN BLM HELICASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLOOM SYNDROME PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: DNA HELICASE,RECQ-LIKE TYPE 2,RECQ2,RECQ PROTEIN-LIKE 3; COMPND 5 EC: 3.6.4.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BLM, RECQ2, RECQL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HELICASE DIMERIZATION ALPHA-HELIX MOTIF, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.SHI,W.-F.CHEN,B.ZHANG,S.-H.FAN,X.AI,N.-N.LIU,S.RETY,X.-G.XI REVDAT 4 08-NOV-23 5M1V 1 OBSLTE REVDAT 3 23-JUN-21 5M1V 1 OBSLTE LINK REVDAT 2 12-DEC-18 5M1V 1 OBSLTE ATOM REVDAT 1 29-NOV-17 5M1V 0 JRNL AUTH J.SHI,W.-F.CHEN,B.ZHANG,S.-H.FAN,X.AI,N.-N.LIU,S.RETY, JRNL AUTH 2 X.-G.XI JRNL TITL STRUCTURES OF N-TERMINAL NDM MOTIF OF BLM REVEAL THE JRNL TITL 2 STRUCTURAL BASIS FOR DIMER AND HEXAMER FORMATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11RC2_2531: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.3 REMARK 3 NUMBER OF REFLECTIONS : 14540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.269 REMARK 3 R VALUE (WORKING SET) : 0.267 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.1841 - 3.4341 0.93 2973 155 0.2430 0.2439 REMARK 3 2 3.4341 - 2.7262 0.99 3084 177 0.2826 0.3435 REMARK 3 3 2.7262 - 2.3817 0.91 2805 156 0.2843 0.3379 REMARK 3 4 2.3817 - 2.1640 0.88 2737 134 0.2990 0.3507 REMARK 3 5 2.1640 - 2.0089 0.72 2202 117 0.3191 0.3852 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1697 REMARK 3 ANGLE : 1.495 2273 REMARK 3 CHIRALITY : 0.059 278 REMARK 3 PLANARITY : 0.005 290 REMARK 3 DIHEDRAL : 18.407 695 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6322 -2.2332 -6.4124 REMARK 3 T TENSOR REMARK 3 T11: 0.2113 T22: 0.1772 REMARK 3 T33: 0.3828 T12: -0.0072 REMARK 3 T13: -0.0025 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 6.7580 L22: 6.5095 REMARK 3 L33: 6.0314 L12: -3.5936 REMARK 3 L13: -4.7460 L23: 4.7214 REMARK 3 S TENSOR REMARK 3 S11: 0.1716 S12: 0.1673 S13: 0.7301 REMARK 3 S21: 0.1325 S22: -0.2303 S23: -0.0148 REMARK 3 S31: 0.1688 S32: -0.0983 S33: 0.1409 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9331 -16.4781 -17.3772 REMARK 3 T TENSOR REMARK 3 T11: 0.3385 T22: 0.4334 REMARK 3 T33: 0.9538 T12: 0.0281 REMARK 3 T13: 0.0604 T23: -0.1034 REMARK 3 L TENSOR REMARK 3 L11: 2.0221 L22: 8.6745 REMARK 3 L33: 5.8990 L12: -2.7678 REMARK 3 L13: 4.8785 L23: 2.5944 REMARK 3 S TENSOR REMARK 3 S11: -0.0678 S12: 0.6911 S13: -1.0007 REMARK 3 S21: -0.5767 S22: 0.8680 S23: -1.2441 REMARK 3 S31: -0.0922 S32: 0.7109 S33: -0.9963 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3516 -2.9052 -15.0670 REMARK 3 T TENSOR REMARK 3 T11: 0.2443 T22: 0.2395 REMARK 3 T33: 0.5114 T12: 0.0055 REMARK 3 T13: 0.0078 T23: 0.0619 REMARK 3 L TENSOR REMARK 3 L11: 7.9470 L22: 9.1732 REMARK 3 L33: 8.5130 L12: 0.3060 REMARK 3 L13: 3.3800 L23: 4.0677 REMARK 3 S TENSOR REMARK 3 S11: -0.0043 S12: 0.0808 S13: 0.4647 REMARK 3 S21: -0.7003 S22: -0.1674 S23: -1.2718 REMARK 3 S31: -0.7268 S32: -0.2545 S33: -0.3526 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7780 1.9817 -14.7395 REMARK 3 T TENSOR REMARK 3 T11: 0.2808 T22: 0.2676 REMARK 3 T33: 0.4963 T12: 0.0653 REMARK 3 T13: 0.0832 T23: 0.0468 REMARK 3 L TENSOR REMARK 3 L11: 3.7330 L22: 3.3301 REMARK 3 L33: 7.8737 L12: 2.4100 REMARK 3 L13: 2.5896 L23: 3.4340 REMARK 3 S TENSOR REMARK 3 S11: 0.0292 S12: 0.2327 S13: 0.3035 REMARK 3 S21: -0.4530 S22: -0.0886 S23: -0.1709 REMARK 3 S31: -0.3525 S32: -0.0132 S33: 0.1604 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5965 -20.9770 -13.1568 REMARK 3 T TENSOR REMARK 3 T11: 0.5212 T22: 0.3489 REMARK 3 T33: 0.6013 T12: -0.0124 REMARK 3 T13: -0.2284 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 5.2278 L22: 6.3971 REMARK 3 L33: 2.0685 L12: 2.7501 REMARK 3 L13: -2.3108 L23: -3.1814 REMARK 3 S TENSOR REMARK 3 S11: -0.9899 S12: 0.4316 S13: -0.4454 REMARK 3 S21: -1.9517 S22: 0.5865 S23: 1.4459 REMARK 3 S31: 0.2383 S32: -0.1794 S33: 0.2942 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6943 -11.2796 -9.6662 REMARK 3 T TENSOR REMARK 3 T11: 0.3131 T22: 0.2608 REMARK 3 T33: 0.5520 T12: -0.0372 REMARK 3 T13: 0.0495 T23: -0.0598 REMARK 3 L TENSOR REMARK 3 L11: 4.8550 L22: 9.3250 REMARK 3 L33: 5.5387 L12: -6.5290 REMARK 3 L13: 3.0699 L23: -4.0022 REMARK 3 S TENSOR REMARK 3 S11: 0.1734 S12: 0.4171 S13: -1.7072 REMARK 3 S21: 0.1294 S22: 0.1201 S23: 1.4391 REMARK 3 S31: 0.5119 S32: 0.0290 S33: 0.0577 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 4 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0442 -49.7065 -11.8683 REMARK 3 T TENSOR REMARK 3 T11: 0.4375 T22: 0.2076 REMARK 3 T33: 0.4914 T12: 0.0495 REMARK 3 T13: 0.1072 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 2.0222 L22: 8.2364 REMARK 3 L33: 4.7580 L12: -1.1528 REMARK 3 L13: 2.6777 L23: -4.9671 REMARK 3 S TENSOR REMARK 3 S11: -0.2289 S12: 0.0252 S13: -0.2294 REMARK 3 S21: -0.1147 S22: -0.2328 S23: -1.2144 REMARK 3 S31: 0.2784 S32: 0.1094 S33: 0.1097 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 26 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1084 -33.2345 -17.5794 REMARK 3 T TENSOR REMARK 3 T11: 0.4884 T22: 0.2264 REMARK 3 T33: 0.4069 T12: -0.0078 REMARK 3 T13: -0.0186 T23: 0.0752 REMARK 3 L TENSOR REMARK 3 L11: 8.2568 L22: 5.9203 REMARK 3 L33: 4.1331 L12: -5.1972 REMARK 3 L13: -3.5426 L23: 4.8271 REMARK 3 S TENSOR REMARK 3 S11: -0.2234 S12: 0.0899 S13: 0.5950 REMARK 3 S21: 0.2110 S22: 0.1787 S23: -0.0206 REMARK 3 S31: -0.0313 S32: -0.0507 S33: -0.0210 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 3 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0003 -44.4295 -12.1849 REMARK 3 T TENSOR REMARK 3 T11: 0.5967 T22: 0.2887 REMARK 3 T33: 0.4339 T12: 0.0400 REMARK 3 T13: -0.1034 T23: 0.0529 REMARK 3 L TENSOR REMARK 3 L11: 3.7522 L22: 6.3018 REMARK 3 L33: 7.7394 L12: -3.7680 REMARK 3 L13: -2.2897 L23: 2.0069 REMARK 3 S TENSOR REMARK 3 S11: -0.3065 S12: -0.4801 S13: 0.0561 REMARK 3 S21: 0.7762 S22: 0.2036 S23: -0.8873 REMARK 3 S31: 0.0883 S32: 0.5460 S33: 0.2971 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 26 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4671 -31.8755 -10.5191 REMARK 3 T TENSOR REMARK 3 T11: 0.5453 T22: 0.3247 REMARK 3 T33: 0.5617 T12: 0.1111 REMARK 3 T13: 0.1116 T23: -0.0475 REMARK 3 L TENSOR REMARK 3 L11: 7.2556 L22: 2.7561 REMARK 3 L33: 8.8831 L12: 2.7688 REMARK 3 L13: 1.3285 L23: 1.5506 REMARK 3 S TENSOR REMARK 3 S11: -0.6414 S12: -0.5985 S13: 0.2049 REMARK 3 S21: 0.6142 S22: -0.0337 S23: 2.1843 REMARK 3 S31: -0.1565 S32: -0.8272 S33: 0.0452 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 37 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6095 -44.4337 -6.9570 REMARK 3 T TENSOR REMARK 3 T11: 0.9849 T22: 0.0563 REMARK 3 T33: 0.5938 T12: 0.2024 REMARK 3 T13: 0.3741 T23: 0.0545 REMARK 3 L TENSOR REMARK 3 L11: 4.4249 L22: 7.1987 REMARK 3 L33: 4.7675 L12: -0.1498 REMARK 3 L13: 0.3699 L23: -5.5322 REMARK 3 S TENSOR REMARK 3 S11: -0.3015 S12: 0.0800 S13: -0.1939 REMARK 3 S21: 2.1287 S22: -0.1119 S23: 1.6382 REMARK 3 S31: 0.6599 S32: -1.0044 S33: 0.0378 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5M1V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 5 REMARK 5 OBSOLETION UPON AUTHORS REQUEST, NO KNOWN SUPERSEDING ENTRY REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001750. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.7 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14566 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.009 REMARK 200 RESOLUTION RANGE LOW (A) : 33.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.09610 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 53.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.11 REMARK 200 R MERGE FOR SHELL (I) : 0.63440 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL 0.1M PH 8.5 PEG 1500 26% REMARK 280 GLYCEROL 16%, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.39100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.39100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 17.04350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.38050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 17.04350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.38050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.39100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 17.04350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.38050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.39100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 17.04350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 72.38050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K A 101 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 213 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ALA A 3 REMARK 465 MET B 1 REMARK 465 VAL B 54 REMARK 465 MET C 1 REMARK 465 VAL C 54 REMARK 465 MET D 1 REMARK 465 ASP D 2 REMARK 465 GLU D 53 REMARK 465 VAL D 54 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 21 O HOH A 201 1.80 REMARK 500 O PRO C 27 O HOH C 201 1.81 REMARK 500 K K D 101 O HOH D 211 1.84 REMARK 500 NZ LYS B 21 O HOH B 201 1.84 REMARK 500 K K A 102 O HOH A 206 1.85 REMARK 500 OE1 GLU A 17 O HOH A 202 1.88 REMARK 500 NZ LYS B 30 O HOH B 202 1.88 REMARK 500 O ASP B 2 O HOH B 203 1.89 REMARK 500 O LEU B 34 O HOH B 204 1.89 REMARK 500 OD2 ASP C 29 O HOH C 202 1.90 REMARK 500 N ASP A 24 O HOH A 201 1.91 REMARK 500 N ASP B 2 O HOH B 203 1.91 REMARK 500 O ALA C 3 O HOH C 203 1.96 REMARK 500 K K D 101 O HOH D 205 1.99 REMARK 500 O ARG D 4 O HOH D 201 2.00 REMARK 500 CG2 ILE C 26 O HOH C 201 2.03 REMARK 500 O GLU B 53 O HOH B 205 2.04 REMARK 500 I IOD A 106 O HOH B 218 2.06 REMARK 500 C LYS A 21 O HOH A 201 2.06 REMARK 500 OD2 ASP C 2 O HOH C 204 2.10 REMARK 500 O HOH C 202 O HOH C 217 2.13 REMARK 500 NE2 GLN A 42 O HOH A 203 2.18 REMARK 500 CE LYS B 30 O HOH B 202 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 212 O HOH C 212 3554 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 3 -30.26 -168.87 REMARK 500 ASP C 35 -60.89 -24.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA C 3 ARG C 4 145.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 213 O REMARK 620 2 HOH A 213 O 0.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG B 48 O REMARK 620 2 LYS B 49 O 104.2 REMARK 620 3 LEU B 50 O 115.3 87.5 REMARK 620 4 THR B 52 OG1 113.8 114.2 118.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 202 O REMARK 620 2 HOH C 217 O 51.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD C 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K D 101 DBREF 5M1V A 2 54 UNP P54132 BLM_HUMAN 362 414 DBREF 5M1V B 2 54 UNP P54132 BLM_HUMAN 362 414 DBREF 5M1V C 2 54 UNP P54132 BLM_HUMAN 362 414 DBREF 5M1V D 2 54 UNP P54132 BLM_HUMAN 362 414 SEQADV 5M1V MET A 1 UNP P54132 INITIATING METHIONINE SEQADV 5M1V MET B 1 UNP P54132 INITIATING METHIONINE SEQADV 5M1V MET C 1 UNP P54132 INITIATING METHIONINE SEQADV 5M1V MET D 1 UNP P54132 INITIATING METHIONINE SEQRES 1 A 54 MET ASP ALA ARG GLN ILE SER LEU GLN GLN GLN LEU ILE SEQRES 2 A 54 HIS VAL MET GLU HIS ILE CYS LYS LEU ILE ASP THR ILE SEQRES 3 A 54 PRO ASP ASP LYS LEU LYS LEU LEU ASP CYS GLY ASN GLU SEQRES 4 A 54 LEU LEU GLN GLN ARG ASN ILE ARG ARG LYS LEU LEU THR SEQRES 5 A 54 GLU VAL SEQRES 1 B 54 MET ASP ALA ARG GLN ILE SER LEU GLN GLN GLN LEU ILE SEQRES 2 B 54 HIS VAL MET GLU HIS ILE CYS LYS LEU ILE ASP THR ILE SEQRES 3 B 54 PRO ASP ASP LYS LEU LYS LEU LEU ASP CYS GLY ASN GLU SEQRES 4 B 54 LEU LEU GLN GLN ARG ASN ILE ARG ARG LYS LEU LEU THR SEQRES 5 B 54 GLU VAL SEQRES 1 C 54 MET ASP ALA ARG GLN ILE SER LEU GLN GLN GLN LEU ILE SEQRES 2 C 54 HIS VAL MET GLU HIS ILE CYS LYS LEU ILE ASP THR ILE SEQRES 3 C 54 PRO ASP ASP LYS LEU LYS LEU LEU ASP CYS GLY ASN GLU SEQRES 4 C 54 LEU LEU GLN GLN ARG ASN ILE ARG ARG LYS LEU LEU THR SEQRES 5 C 54 GLU VAL SEQRES 1 D 54 MET ASP ALA ARG GLN ILE SER LEU GLN GLN GLN LEU ILE SEQRES 2 D 54 HIS VAL MET GLU HIS ILE CYS LYS LEU ILE ASP THR ILE SEQRES 3 D 54 PRO ASP ASP LYS LEU LYS LEU LEU ASP CYS GLY ASN GLU SEQRES 4 D 54 LEU LEU GLN GLN ARG ASN ILE ARG ARG LYS LEU LEU THR SEQRES 5 D 54 GLU VAL HET K A 101 1 HET K A 102 1 HET K A 103 1 HET CL A 104 1 HET IOD A 105 1 HET IOD A 106 1 HET K B 101 1 HET K B 102 1 HET K C 101 1 HET K C 102 1 HET IOD C 103 1 HET IOD C 104 1 HET K D 101 1 HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION HETNAM IOD IODIDE ION FORMUL 5 K 8(K 1+) FORMUL 8 CL CL 1- FORMUL 9 IOD 4(I 1-) FORMUL 18 HOH *65(H2 O) HELIX 1 AA1 ARG A 4 ILE A 26 1 23 HELIX 2 AA2 PRO A 27 LEU A 31 5 5 HELIX 3 AA3 CYS A 36 LEU A 51 1 16 HELIX 4 AA4 ALA B 3 ASP B 24 1 22 HELIX 5 AA5 PRO B 27 LYS B 32 1 6 HELIX 6 AA6 CYS B 36 THR B 52 1 17 HELIX 7 AA7 ARG C 4 ASP C 24 1 21 HELIX 8 AA8 PRO C 27 LYS C 32 1 6 HELIX 9 AA9 CYS C 36 GLU C 53 1 18 HELIX 10 AB1 ARG D 4 THR D 25 1 22 HELIX 11 AB2 PRO D 27 LYS D 32 1 6 HELIX 12 AB3 LEU D 33 ASP D 35 5 3 HELIX 13 AB4 CYS D 36 LEU D 51 1 16 LINK K K A 101 O HOH A 213 1555 1555 2.20 LINK K K A 101 O HOH A 213 1555 4555 2.20 LINK K K A 103 O HOH A 211 1555 1555 2.16 LINK O ARG B 48 K K B 101 1555 1555 2.73 LINK O LYS B 49 K K B 101 1555 1555 2.67 LINK O LEU B 50 K K B 101 1555 1555 3.50 LINK OG1 THR B 52 K K B 101 1555 1555 2.57 LINK K K B 102 O HOH B 217 1555 1555 2.03 LINK K K C 101 O HOH C 202 1555 1555 2.65 LINK K K C 101 O HOH C 217 1555 1555 2.23 LINK K K C 102 O HOH C 221 1555 1555 2.16 CISPEP 1 GLU A 53 VAL A 54 0 -6.77 SITE 1 AC1 3 GLN A 10 HIS A 14 HOH A 213 SITE 1 AC2 1 HOH A 206 SITE 1 AC3 2 GLU A 17 HOH A 211 SITE 1 AC4 3 LYS A 21 ASP A 24 ARG A 47 SITE 1 AC5 3 ILE A 26 LYS A 30 ASP B 35 SITE 1 AC6 2 ASP A 35 HOH B 218 SITE 1 AC7 5 ARG B 48 LYS B 49 LEU B 50 LEU B 51 SITE 2 AC7 5 THR B 52 SITE 1 AC8 2 ARG B 47 HOH B 217 SITE 1 AC9 2 HOH C 202 HOH C 217 SITE 1 AD1 2 LYS C 30 HOH C 221 SITE 1 AD2 3 PRO C 27 LYS C 30 ASP D 35 SITE 1 AD3 2 ASP C 35 CYS C 36 SITE 1 AD4 3 ARG D 47 HOH D 205 HOH D 211 CRYST1 34.087 144.761 96.782 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029337 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006908 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010332 0.00000