HEADER HYDROLASE 11-OCT-16 5M1Z TITLE STRUCTURE OF THE ALPHA-L-ARABINOFURANOSIDASE ARB93A FROM FUSARIUM TITLE 2 GRAMINEARUM IN COMPLEX WITH AN HYDROXIMOLACTONE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXO-1,5-ALPHA-L-ARABINOFURANOBIOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.55; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE DEPOSITED SEQUENCE IS FROM THE MATURE PROTEIN. OUR COMPND 7 NUMBERING INCLUDE THE PEPTIDE SIGNAL AND IS SWITCHED BY 16 AMINO COMPND 8 ACIDS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GIBBERELLA ZEAE; SOURCE 3 ORGANISM_COMMON: WHEAT HEAD BLIGHT FUNGUS; SOURCE 4 ORGANISM_TAXID: 5518; SOURCE 5 GENE: ARB93A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET30A KEYWDS ARABINOFURAMISODASE, INHIBITOR, COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.VARROT REVDAT 6 17-JAN-24 5M1Z 1 HETSYN LINK REVDAT 5 29-JUL-20 5M1Z 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 14-JUN-17 5M1Z 1 JRNL REVDAT 3 03-MAY-17 5M1Z 1 JRNL REVDAT 2 22-MAR-17 5M1Z 1 JRNL REVDAT 1 28-DEC-16 5M1Z 0 JRNL AUTH T.COYLE,A.W.DEBOWSKI,A.VARROT,K.A.STUBBS JRNL TITL EXPLOITING SP(2) -HYBRIDISATION IN THE DEVELOPMENT OF POTENT JRNL TITL 2 1,5-ALPHA-L-ARABINANASE INHIBITORS. JRNL REF CHEMBIOCHEM V. 18 974 2017 JRNL REFN ESSN 1439-7633 JRNL PMID 28266777 JRNL DOI 10.1002/CBIC.201700073 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 25290 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1402 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1849 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2825 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44000 REMARK 3 B22 (A**2) : 0.44000 REMARK 3 B33 (A**2) : -0.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.556 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2976 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2681 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4068 ; 1.785 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6209 ; 0.994 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 360 ; 7.105 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;36.392 ;24.240 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 442 ;12.129 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;15.407 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 437 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3307 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 658 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1440 ; 1.484 ; 1.869 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1439 ; 1.471 ; 1.867 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1800 ; 2.242 ; 2.792 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1801 ; 2.244 ; 2.794 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1536 ; 2.152 ; 2.109 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1536 ; 2.152 ; 2.109 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2269 ; 3.284 ; 3.068 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3368 ; 4.961 ;22.624 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3329 ; 4.852 ;22.422 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5M1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200001756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12713 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.6 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26709 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 35.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.56100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 2YDT REMARK 200 REMARK 200 REMARK: DIAMOND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG550MME 0.1M MES 6.5 0.2M MNSO4, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.61100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 52.61100 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.11700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.61100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.05850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.61100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.17550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.61100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 105.17550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.61100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.05850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 52.61100 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 52.61100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.11700 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 52.61100 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 52.61100 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 70.11700 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 52.61100 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 105.17550 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 52.61100 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 35.05850 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 52.61100 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 35.05850 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 52.61100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 105.17550 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 52.61100 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 52.61100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 70.11700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MN MN A 510 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 602 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 789 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 839 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 15 REMARK 465 MET A 16 REMARK 465 LYS A 17 REMARK 465 PRO A 18 REMARK 465 ALA A 19 REMARK 465 GLN A 20 REMARK 465 LYS A 21 REMARK 465 SER A 381 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 77 CD CE NZ REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 LYS A 265 CD CE NZ REMARK 470 LYS A 300 CD CE NZ REMARK 470 GLN A 345 CG CD OE1 NE2 REMARK 470 LYS A 346 CD CE NZ REMARK 470 LYS A 380 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 39 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 41 -57.54 82.60 REMARK 500 TYR A 44 63.72 70.79 REMARK 500 VAL A 150 -60.97 -105.29 REMARK 500 PRO A 161 49.54 -78.43 REMARK 500 GLU A 170 61.22 64.59 REMARK 500 LYS A 177 -115.80 49.17 REMARK 500 ASP A 189 59.98 -92.07 REMARK 500 LEU A 205 -0.47 74.97 REMARK 500 MET A 226 61.82 65.12 REMARK 500 SER A 289 62.83 32.65 REMARK 500 MET A 379 56.61 -93.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 878 DISTANCE = 5.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 507 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 32 OD1 REMARK 620 2 HOH A 632 O 91.0 REMARK 620 3 HOH A 653 O 100.0 167.3 REMARK 620 4 HOH A 662 O 86.3 93.5 93.6 REMARK 620 5 HOH A 739 O 173.8 86.8 82.9 88.1 REMARK 620 6 HOH A 834 O 92.1 80.5 92.6 173.8 93.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 508 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 32 OD2 REMARK 620 2 HOH A 644 O 77.5 REMARK 620 3 HOH A 647 O 71.7 68.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 509 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 313 OE2 REMARK 620 2 ASP A 330 OD1 103.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 510 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 377 OE2 REMARK 620 2 GLU A 377 OE2 0.0 REMARK 620 N 1 DBREF 5M1Z A 17 381 UNP B8ZY56 B8ZY56_GIBZA 1 365 SEQADV 5M1Z ALA A 15 UNP B8ZY56 EXPRESSION TAG SEQADV 5M1Z MET A 16 UNP B8ZY56 EXPRESSION TAG SEQRES 1 A 367 ALA MET LYS PRO ALA GLN LYS GLY LYS THR PHE SER ASN SEQRES 2 A 367 VAL GLU ILE PHE ASP PRO PRO THR ASN TYR ARG ASP PRO SEQRES 3 A 367 GLN VAL LEU TYR ALA ARG PRO LEU GLU LEU SER ASP GLY SEQRES 4 A 367 THR LEU LEU GLY THR TRP GLU ASN TYR SER PRO GLU PRO SEQRES 5 A 367 PRO ASN VAL TRP PHE PRO ILE VAL LYS SER LYS ASP GLY SEQRES 6 A 367 GLY LYS THR TRP LYS GLU ILE SER LYS VAL LYS ASP THR SEQRES 7 A 367 GLN ASN ASN TRP GLY LEU ARG TYR GLN PRO GLN LEU TYR SEQRES 8 A 367 GLU LEU PRO ARG ALA PHE GLY LYS TYR PRO LYS GLY THR SEQRES 9 A 367 VAL LEU CYS SER GLY SER SER ILE PRO SER ASP LEU SER SEQRES 10 A 367 GLU THR LEU ILE GLU VAL TYR ALA SER ARG ASP LYS GLY SEQRES 11 A 367 TYR THR TRP GLU PHE VAL SER HIS VAL ALA LEU GLY GLY SEQRES 12 A 367 GLU ALA LEU PRO ASN PRO GLY LEU THR PRO VAL TRP GLU SEQRES 13 A 367 PRO PHE LEU MET THR TYR LYS GLU LYS LEU ILE LEU TYR SEQRES 14 A 367 TYR SER ASP GLN ARG ASP ASN ALA THR HIS SER GLN LYS SEQRES 15 A 367 LEU VAL HIS GLN THR THR THR ASP LEU LYS LYS TRP SER SEQRES 16 A 367 LYS VAL VAL ASP ASP THR LYS TYR ALA ASN TYR TYR ALA SEQRES 17 A 367 ARG PRO GLY MET PRO THR VAL ALA LYS LEU PRO ASN ASN SEQRES 18 A 367 GLU TYR ILE TYR VAL TYR GLU TYR GLY GLY GLY PRO ASN SEQRES 19 A 367 PRO PRO ALA GLY SER ASP TYR TRP PHE PRO VAL TYR TYR SEQRES 20 A 367 ARG LEU SER LYS ASP PRO GLN LYS PHE LEU ASN LYS ALA SEQRES 21 A 367 HIS HIS GLN ILE VAL SER ASN ASP GLY THR THR PRO ALA SEQRES 22 A 367 GLY SER PRO TYR VAL VAL TRP THR PRO TYR GLY GLY LYS SEQRES 23 A 367 ASN GLY THR ILE VAL VAL SER CYS GLY THR ARG SER GLU SEQRES 24 A 367 ILE PHE THR ASN GLN ALA LEU GLY ASP ALA SER ALA TRP SEQRES 25 A 367 LYS LYS TRP ASP VAL PRO GLN PRO THR ALA TYR THR ARG SEQRES 26 A 367 SER LEU LEU THR PHE GLN LYS ASP PRO ASP LEU LEU MET SEQRES 27 A 367 ILE MET GLY ALA GLY ILE LEU PRO PRO ALA GLY GLY LYS SEQRES 28 A 367 ASN THR VAL SER ALA SER VAL VAL ARG LEU SER GLU VAL SEQRES 29 A 367 MET LYS SER HET 6LW B 1 11 HET AHR B 2 9 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET MN A 507 1 HET MN A 508 1 HET MN A 509 1 HET MN A 510 1 HET EDO A 511 4 HET GOL A 512 6 HETNAM 6LW (Z)-L-ARABINONHYDROXIMO-1,4-LACTONE HETNAM AHR ALPHA-L-ARABINOFURANOSE HETNAM SO4 SULFATE ION HETNAM MN MANGANESE (II) ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN 6LW (2~{Z},3~{R},4~{R},5~{S})-2-HYDROXYIMINO-5- HETSYN 2 6LW (HYDROXYMETHYL)OXOLANE-3,4-DIOL HETSYN AHR ALPHA-L-ARABINOSE; L-ARABINOSE; ARABINOSE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 6LW C5 H9 N O5 FORMUL 2 AHR C5 H10 O5 FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 MN 4(MN 2+) FORMUL 12 EDO C2 H6 O2 FORMUL 13 GOL C3 H8 O3 FORMUL 14 HOH *278(H2 O) HELIX 1 AA1 LEU A 375 MET A 379 1 5 SHEET 1 AA1 4 PHE A 25 PHE A 31 0 SHEET 2 AA1 4 VAL A 368 ARG A 374 -1 O VAL A 368 N ILE A 30 SHEET 3 AA1 4 LEU A 350 GLY A 355 -1 N LEU A 351 O VAL A 373 SHEET 4 AA1 4 SER A 340 THR A 343 -1 N LEU A 342 O MET A 352 SHEET 1 AA2 4 VAL A 42 GLU A 49 0 SHEET 2 AA2 4 LEU A 55 ASN A 61 -1 O GLU A 60 N LEU A 43 SHEET 3 AA2 4 PHE A 71 SER A 76 -1 O SER A 76 N LEU A 55 SHEET 4 AA2 4 LYS A 84 VAL A 89 -1 O VAL A 89 N PHE A 71 SHEET 1 AA3 4 LEU A 98 GLU A 106 0 SHEET 2 AA3 4 VAL A 119 SER A 125 -1 O LEU A 120 N TYR A 105 SHEET 3 AA3 4 THR A 133 SER A 140 -1 O TYR A 138 N CYS A 121 SHEET 4 AA3 4 GLU A 148 GLY A 156 -1 O GLY A 156 N THR A 133 SHEET 1 AA4 4 VAL A 168 TYR A 176 0 SHEET 2 AA4 4 LYS A 179 ASP A 186 -1 O TYR A 183 N PHE A 172 SHEET 3 AA4 4 LYS A 196 THR A 202 -1 O GLN A 200 N LEU A 182 SHEET 4 AA4 4 VAL A 212 THR A 215 -1 O ASP A 214 N LEU A 197 SHEET 1 AA5 4 ARG A 223 LYS A 231 0 SHEET 2 AA5 4 TYR A 237 GLY A 244 -1 O VAL A 240 N THR A 228 SHEET 3 AA5 4 VAL A 259 SER A 264 -1 O ARG A 262 N TYR A 239 SHEET 4 AA5 4 HIS A 276 GLN A 277 -1 O HIS A 276 N TYR A 261 SHEET 1 AA6 4 TYR A 291 THR A 295 0 SHEET 2 AA6 4 THR A 303 SER A 307 -1 O VAL A 305 N VAL A 293 SHEET 3 AA6 4 ILE A 314 ASN A 317 -1 O PHE A 315 N VAL A 306 SHEET 4 AA6 4 TRP A 326 TRP A 329 -1 O TRP A 329 N ILE A 314 LINK O5 6LW B 1 C1 AHR B 2 1555 1555 1.45 LINK OD1 ASP A 32 MN MN A 507 1555 1555 2.17 LINK OD2 ASP A 32 MN MN A 508 1555 1555 2.28 LINK OE2 GLU A 313 MN MN A 509 1555 1555 2.35 LINK OD1 ASP A 330 MN MN A 509 1555 1555 2.32 LINK OE2 GLU A 377 MN MN A 510 1555 1555 1.87 LINK OE2 GLU A 377 MN MN A 510 1555 15645 1.94 LINK MN MN A 507 O HOH A 632 1555 1555 2.30 LINK MN MN A 507 O HOH A 653 1555 1555 2.22 LINK MN MN A 507 O HOH A 662 1555 1555 2.21 LINK MN MN A 507 O HOH A 739 1555 1555 2.29 LINK MN MN A 507 O HOH A 834 1555 1555 2.31 LINK MN MN A 508 O HOH A 644 1555 1555 2.13 LINK MN MN A 508 O HOH A 647 1555 1555 2.18 CISPEP 1 ASP A 39 PRO A 40 0 9.49 CISPEP 2 GLU A 65 PRO A 66 0 -4.15 CISPEP 3 PRO A 66 PRO A 67 0 -5.11 CISPEP 4 PRO A 360 PRO A 361 0 1.55 CRYST1 105.222 105.222 140.234 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009504 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009504 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007131 0.00000