HEADER LYASE 12-OCT-16 5M27 TITLE STRUCTURE OF A BACTERIAL LIGHT-REGULATED ADENYLYL CYLCASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA SUBUNIT OF PHOTOACTIVATED ADENYLYL CYCLASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BEGGIATOA PHOTOACTIVATABLE ADENYLYL CYCLASE BPAC; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BEGGIATOA SP. PS; SOURCE 3 ORGANISM_TAXID: 422289; SOURCE 4 GENE: BGP_1043; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS BLUF, ADENYLYL CYCLASE, PHOTORECEPTOR, OPTOGENETICS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR R.LINDNER,E.HARTMANN,M.TARNAWSKI,A.WINKLER,D.FREY,J.REINSTEIN, AUTHOR 2 A.MEINHART,I.SCHLICHTING REVDAT 3 17-JAN-24 5M27 1 REMARK LINK REVDAT 2 03-MAY-17 5M27 1 JRNL REVDAT 1 05-APR-17 5M27 0 JRNL AUTH R.LINDNER,E.HARTMANN,M.TARNAWSKI,A.WINKLER,D.FREY, JRNL AUTH 2 J.REINSTEIN,A.MEINHART,I.SCHLICHTING JRNL TITL PHOTOACTIVATION MECHANISM OF A BACTERIAL LIGHT-REGULATED JRNL TITL 2 ADENYLYL CYCLASE. JRNL REF J. MOL. BIOL. V. 429 1336 2017 JRNL REFN ESSN 1089-8638 JRNL PMID 28336405 JRNL DOI 10.1016/J.JMB.2017.03.020 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 48657 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9266 - 4.3078 0.97 4727 144 0.1877 0.1982 REMARK 3 2 4.3078 - 3.4196 0.97 4734 145 0.1872 0.2346 REMARK 3 3 3.4196 - 2.9875 0.97 4708 143 0.2102 0.2517 REMARK 3 4 2.9875 - 2.7144 0.97 4754 147 0.2331 0.2620 REMARK 3 5 2.7144 - 2.5198 0.97 4761 147 0.2241 0.2842 REMARK 3 6 2.5198 - 2.3713 0.97 4724 146 0.2292 0.2515 REMARK 3 7 2.3713 - 2.2525 0.97 4762 147 0.2320 0.2439 REMARK 3 8 2.2525 - 2.1545 0.96 4669 144 0.2346 0.2886 REMARK 3 9 2.1545 - 2.0715 0.97 4716 145 0.2465 0.2743 REMARK 3 10 2.0715 - 2.0000 0.96 4649 145 0.2547 0.2911 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5600 REMARK 3 ANGLE : 0.902 7594 REMARK 3 CHIRALITY : 0.056 904 REMARK 3 PLANARITY : 0.006 940 REMARK 3 DIHEDRAL : 18.511 2096 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3362 -19.7812 -33.3049 REMARK 3 T TENSOR REMARK 3 T11: 0.3365 T22: 0.2932 REMARK 3 T33: 0.2352 T12: -0.0044 REMARK 3 T13: -0.0135 T23: -0.0401 REMARK 3 L TENSOR REMARK 3 L11: 0.0068 L22: 0.0065 REMARK 3 L33: 0.0879 L12: -0.0106 REMARK 3 L13: -0.0279 L23: 0.0201 REMARK 3 S TENSOR REMARK 3 S11: -0.2203 S12: 0.1130 S13: -0.1444 REMARK 3 S21: 0.1636 S22: -0.2371 S23: -0.1498 REMARK 3 S31: 0.5390 S32: -0.3344 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2686 -20.0992 -37.9577 REMARK 3 T TENSOR REMARK 3 T11: 0.3200 T22: 0.2578 REMARK 3 T33: 0.1435 T12: 0.0073 REMARK 3 T13: -0.0253 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: -0.0856 L22: 0.3064 REMARK 3 L33: 0.5676 L12: 0.0591 REMARK 3 L13: 0.1153 L23: 0.3202 REMARK 3 S TENSOR REMARK 3 S11: 0.0508 S12: 0.0998 S13: -0.0237 REMARK 3 S21: 0.1289 S22: -0.0582 S23: -0.0941 REMARK 3 S31: 0.1748 S32: -0.0297 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 347 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7876 -17.4997 -0.2290 REMARK 3 T TENSOR REMARK 3 T11: 0.0935 T22: 0.1026 REMARK 3 T33: 0.0967 T12: -0.0034 REMARK 3 T13: -0.0087 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 0.7853 L22: 0.6786 REMARK 3 L33: -0.0248 L12: -0.0466 REMARK 3 L13: -0.0002 L23: -0.2929 REMARK 3 S TENSOR REMARK 3 S11: 0.0340 S12: -0.0562 S13: -0.0529 REMARK 3 S21: -0.0314 S22: -0.0224 S23: 0.0223 REMARK 3 S31: -0.0175 S32: -0.0022 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5474 3.4194 -38.4364 REMARK 3 T TENSOR REMARK 3 T11: 0.3025 T22: 0.2916 REMARK 3 T33: 0.1218 T12: 0.0153 REMARK 3 T13: 0.0187 T23: 0.0384 REMARK 3 L TENSOR REMARK 3 L11: -0.0189 L22: 0.2983 REMARK 3 L33: 0.8120 L12: 0.3146 REMARK 3 L13: 0.0152 L23: 0.3066 REMARK 3 S TENSOR REMARK 3 S11: 0.0609 S12: 0.0279 S13: -0.1091 REMARK 3 S21: -0.0363 S22: -0.0038 S23: 0.1357 REMARK 3 S31: -0.1416 S32: 0.1530 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 127 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4884 4.2612 -4.0774 REMARK 3 T TENSOR REMARK 3 T11: 0.1246 T22: 0.1195 REMARK 3 T33: 0.1347 T12: -0.0129 REMARK 3 T13: 0.0133 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 0.3413 L22: 0.6424 REMARK 3 L33: -0.0631 L12: -0.3577 REMARK 3 L13: 0.0593 L23: 0.1328 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: -0.0246 S13: 0.0270 REMARK 3 S21: -0.0309 S22: -0.0115 S23: 0.0057 REMARK 3 S31: -0.0215 S32: 0.0248 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 286 THROUGH 347 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8847 11.2563 11.3429 REMARK 3 T TENSOR REMARK 3 T11: 0.0979 T22: 0.1507 REMARK 3 T33: 0.0963 T12: 0.0199 REMARK 3 T13: 0.0101 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: 0.0998 L22: 0.1386 REMARK 3 L33: 0.3110 L12: 0.1097 REMARK 3 L13: 0.1948 L23: 0.5483 REMARK 3 S TENSOR REMARK 3 S11: -0.1802 S12: -0.3723 S13: 0.3267 REMARK 3 S21: 0.2102 S22: -0.0207 S23: -0.2885 REMARK 3 S31: 0.0106 S32: -0.0130 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5M27 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001769. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48658 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 44.915 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BYC AND 1WC0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA-MES PH 6.5, 0.2 M CACL2,0.6 M REMARK 280 NACL, 20 % W/V PEG 3350; 3% W/V 1,6-DIAMINOHEXANE IN DROP, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -162.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 HIS A 14 REMARK 465 LEU A 15 REMARK 465 TYR A 81 REMARK 465 ASP A 82 REMARK 465 VAL A 314 REMARK 465 LYS A 315 REMARK 465 GLY A 316 REMARK 465 LYS A 317 REMARK 465 GLN A 318 REMARK 465 ASN A 348 REMARK 465 ASP A 349 REMARK 465 LYS A 350 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 GLY B 13 REMARK 465 HIS B 14 REMARK 465 LYS B 315 REMARK 465 GLY B 316 REMARK 465 LYS B 317 REMARK 465 GLN B 318 REMARK 465 ASN B 348 REMARK 465 ASP B 349 REMARK 465 LYS B 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 130 OE2 GLU A 255 1.54 REMARK 500 NH1 ARG A 130 CD GLU A 255 2.13 REMARK 500 O HOH A 563 O HOH A 632 2.14 REMARK 500 O HOH A 639 O HOH A 649 2.15 REMARK 500 OD1 ASN A 274 NH1 ARG A 278 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 93 108.19 -163.03 REMARK 500 GLU A 100 32.03 -96.31 REMARK 500 LEU B 43 119.03 -161.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 668 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A 669 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH B 694 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH B 695 DISTANCE = 6.38 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 157 OD2 REMARK 620 2 ILE A 158 O 110.7 REMARK 620 3 ASP A 201 OD2 104.9 83.7 REMARK 620 4 HOH A 626 O 118.5 75.8 136.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 157 OD2 REMARK 620 2 ILE B 158 O 93.7 REMARK 620 3 ASP B 201 OD2 77.0 83.2 REMARK 620 4 HOH B 514 O 99.5 150.9 74.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 405 DBREF 5M27 A 1 350 UNP A7BT71 A7BT71_9GAMM 1 350 DBREF 5M27 B 1 350 UNP A7BT71 A7BT71_9GAMM 1 350 SEQADV 5M27 GLY A -2 UNP A7BT71 EXPRESSION TAG SEQADV 5M27 SER A -1 UNP A7BT71 EXPRESSION TAG SEQADV 5M27 HIS A 0 UNP A7BT71 EXPRESSION TAG SEQADV 5M27 GLY B -2 UNP A7BT71 EXPRESSION TAG SEQADV 5M27 SER B -1 UNP A7BT71 EXPRESSION TAG SEQADV 5M27 HIS B 0 UNP A7BT71 EXPRESSION TAG SEQRES 1 A 353 GLY SER HIS MET MET LYS ARG LEU VAL TYR ILE SER LYS SEQRES 2 A 353 ILE SER GLY HIS LEU SER LEU GLU GLU ILE GLN ARG ILE SEQRES 3 A 353 GLY LYS VAL SER ILE LYS ASN ASN GLN ARG ASP ASN ILE SEQRES 4 A 353 THR GLY VAL LEU LEU TYR LEU GLN GLY LEU PHE PHE GLN SEQRES 5 A 353 ILE LEU GLU GLY GLU ASN GLU LYS VAL ASP LYS LEU TYR SEQRES 6 A 353 LYS LYS ILE LEU VAL ASP ASP ARG HIS THR ASN ILE LEU SEQRES 7 A 353 CYS LEU LYS THR GLU TYR ASP ILE THR ASP ARG MET PHE SEQRES 8 A 353 PRO ASN TRP ALA MET LYS THR ILE ASN LEU ASN GLU ASN SEQRES 9 A 353 SER GLU LEU MET ILE GLN PRO ILE LYS SER LEU LEU GLN SEQRES 10 A 353 THR ILE THR GLN SER HIS ARG VAL LEU GLU LYS TYR MET SEQRES 11 A 353 PRO ALA ARG VAL ILE TYR LEU ILE ASN GLN GLY ILE ASN SEQRES 12 A 353 PRO LEU THR VAL GLU PRO GLN LEU VAL GLU LYS ILE ILE SEQRES 13 A 353 PHE PHE SER ASP ILE LEU ALA PHE SER THR LEU THR GLU SEQRES 14 A 353 LYS LEU PRO VAL ASN GLU VAL VAL ILE LEU VAL ASN ARG SEQRES 15 A 353 TYR PHE SER ILE CYS THR ARG ILE ILE SER ALA TYR GLY SEQRES 16 A 353 GLY GLU VAL THR LYS PHE ILE GLY ASP CYS VAL MET ALA SEQRES 17 A 353 SER PHE THR LYS GLU GLN GLY ASP ALA ALA ILE ARG THR SEQRES 18 A 353 SER LEU ASP ILE ILE SER GLU LEU LYS GLN LEU ARG HIS SEQRES 19 A 353 HIS VAL GLU ALA THR ASN PRO LEU HIS LEU LEU TYR THR SEQRES 20 A 353 GLY ILE GLY LEU SER TYR GLY HIS VAL ILE GLU GLY ASN SEQRES 21 A 353 MET GLY SER SER LEU LYS MET ASP HIS THR LEU LEU GLY SEQRES 22 A 353 ASP ALA VAL ASN VAL ALA ALA ARG LEU GLU ALA LEU THR SEQRES 23 A 353 ARG GLN LEU PRO TYR ALA LEU ALA PHE THR ALA GLY VAL SEQRES 24 A 353 LYS LYS CYS CYS GLN ALA GLN TRP THR PHE ILE ASN LEU SEQRES 25 A 353 GLY ALA HIS GLN VAL LYS GLY LYS GLN GLU ALA ILE GLU SEQRES 26 A 353 VAL TYR THR VAL ASN GLU ALA GLN LYS TYR TYR ASP THR SEQRES 27 A 353 LEU GLN ILE THR GLN LEU ILE ARG GLN THR LEU GLU ASN SEQRES 28 A 353 ASP LYS SEQRES 1 B 353 GLY SER HIS MET MET LYS ARG LEU VAL TYR ILE SER LYS SEQRES 2 B 353 ILE SER GLY HIS LEU SER LEU GLU GLU ILE GLN ARG ILE SEQRES 3 B 353 GLY LYS VAL SER ILE LYS ASN ASN GLN ARG ASP ASN ILE SEQRES 4 B 353 THR GLY VAL LEU LEU TYR LEU GLN GLY LEU PHE PHE GLN SEQRES 5 B 353 ILE LEU GLU GLY GLU ASN GLU LYS VAL ASP LYS LEU TYR SEQRES 6 B 353 LYS LYS ILE LEU VAL ASP ASP ARG HIS THR ASN ILE LEU SEQRES 7 B 353 CYS LEU LYS THR GLU TYR ASP ILE THR ASP ARG MET PHE SEQRES 8 B 353 PRO ASN TRP ALA MET LYS THR ILE ASN LEU ASN GLU ASN SEQRES 9 B 353 SER GLU LEU MET ILE GLN PRO ILE LYS SER LEU LEU GLN SEQRES 10 B 353 THR ILE THR GLN SER HIS ARG VAL LEU GLU LYS TYR MET SEQRES 11 B 353 PRO ALA ARG VAL ILE TYR LEU ILE ASN GLN GLY ILE ASN SEQRES 12 B 353 PRO LEU THR VAL GLU PRO GLN LEU VAL GLU LYS ILE ILE SEQRES 13 B 353 PHE PHE SER ASP ILE LEU ALA PHE SER THR LEU THR GLU SEQRES 14 B 353 LYS LEU PRO VAL ASN GLU VAL VAL ILE LEU VAL ASN ARG SEQRES 15 B 353 TYR PHE SER ILE CYS THR ARG ILE ILE SER ALA TYR GLY SEQRES 16 B 353 GLY GLU VAL THR LYS PHE ILE GLY ASP CYS VAL MET ALA SEQRES 17 B 353 SER PHE THR LYS GLU GLN GLY ASP ALA ALA ILE ARG THR SEQRES 18 B 353 SER LEU ASP ILE ILE SER GLU LEU LYS GLN LEU ARG HIS SEQRES 19 B 353 HIS VAL GLU ALA THR ASN PRO LEU HIS LEU LEU TYR THR SEQRES 20 B 353 GLY ILE GLY LEU SER TYR GLY HIS VAL ILE GLU GLY ASN SEQRES 21 B 353 MET GLY SER SER LEU LYS MET ASP HIS THR LEU LEU GLY SEQRES 22 B 353 ASP ALA VAL ASN VAL ALA ALA ARG LEU GLU ALA LEU THR SEQRES 23 B 353 ARG GLN LEU PRO TYR ALA LEU ALA PHE THR ALA GLY VAL SEQRES 24 B 353 LYS LYS CYS CYS GLN ALA GLN TRP THR PHE ILE ASN LEU SEQRES 25 B 353 GLY ALA HIS GLN VAL LYS GLY LYS GLN GLU ALA ILE GLU SEQRES 26 B 353 VAL TYR THR VAL ASN GLU ALA GLN LYS TYR TYR ASP THR SEQRES 27 B 353 LEU GLN ILE THR GLN LEU ILE ARG GLN THR LEU GLU ASN SEQRES 28 B 353 ASP LYS HET FMN A 401 31 HET CL A 402 1 HET CL A 403 1 HET CL A 404 1 HET CA A 405 1 HET FMN B 401 31 HET CL B 402 1 HET CL B 403 1 HET CL B 404 1 HET CA B 405 1 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 CL 6(CL 1-) FORMUL 7 CA 2(CA 2+) FORMUL 13 HOH *364(H2 O) HELIX 1 AA1 LEU A 17 ASP A 34 1 18 HELIX 2 AA2 GLU A 54 VAL A 67 1 14 HELIX 3 AA3 ILE A 106 TYR A 126 1 21 HELIX 4 AA4 PRO A 128 GLN A 137 1 10 HELIX 5 AA5 ASN A 140 VAL A 144 5 5 HELIX 6 AA6 ALA A 160 LEU A 168 1 9 HELIX 7 AA7 PRO A 169 TYR A 191 1 23 HELIX 8 AA8 GLN A 211 VAL A 233 1 23 HELIX 9 AA9 ASN A 237 LEU A 242 5 6 HELIX 10 AB1 GLY A 270 THR A 283 1 14 HELIX 11 AB2 ARG A 284 LEU A 286 5 3 HELIX 12 AB3 THR A 293 CYS A 299 1 7 HELIX 13 AB4 GLU A 328 GLN A 330 5 3 HELIX 14 AB5 ASP A 334 GLU A 347 1 14 HELIX 15 AB6 SER B 16 ASP B 34 1 19 HELIX 16 AB7 ASN B 55 VAL B 67 1 13 HELIX 17 AB8 ILE B 106 TYR B 126 1 21 HELIX 18 AB9 PRO B 128 GLN B 137 1 10 HELIX 19 AC1 ALA B 160 LEU B 168 1 9 HELIX 20 AC2 PRO B 169 TYR B 191 1 23 HELIX 21 AC3 GLN B 211 VAL B 233 1 23 HELIX 22 AC4 ASN B 237 LEU B 242 5 6 HELIX 23 AC5 GLY B 270 THR B 283 1 14 HELIX 24 AC6 ARG B 284 LEU B 286 5 3 HELIX 25 AC7 THR B 293 CYS B 299 1 7 HELIX 26 AC8 GLU B 328 GLN B 330 5 3 HELIX 27 AC9 ASP B 334 LEU B 346 1 13 SHEET 1 AA1 5 HIS A 71 GLU A 80 0 SHEET 2 AA1 5 LYS A 3 ILE A 11 -1 N LYS A 10 O THR A 72 SHEET 3 AA1 5 LEU A 46 GLY A 53 -1 O GLY A 53 N LYS A 3 SHEET 4 AA1 5 THR A 37 LEU A 43 -1 N LEU A 41 O PHE A 48 SHEET 5 AA1 5 LYS A 94 ASN A 97 1 O LYS A 94 N LEU A 40 SHEET 1 AA2 5 GLU A 194 ILE A 199 0 SHEET 2 AA2 5 CYS A 202 THR A 208 -1 O MET A 204 N THR A 196 SHEET 3 AA2 5 GLN A 147 ILE A 158 -1 N ILE A 152 O PHE A 207 SHEET 4 AA2 5 THR A 244 GLY A 259 -1 O GLY A 247 N PHE A 155 SHEET 5 AA2 5 MET A 264 LEU A 269 -1 O LEU A 269 N ILE A 254 SHEET 1 AA3 5 GLU A 194 ILE A 199 0 SHEET 2 AA3 5 CYS A 202 THR A 208 -1 O MET A 204 N THR A 196 SHEET 3 AA3 5 GLN A 147 ILE A 158 -1 N ILE A 152 O PHE A 207 SHEET 4 AA3 5 THR A 244 GLY A 259 -1 O GLY A 247 N PHE A 155 SHEET 5 AA3 5 LEU A 290 PHE A 292 1 O ALA A 291 N ILE A 246 SHEET 1 AA4 2 PHE A 306 HIS A 312 0 SHEET 2 AA4 2 ILE A 321 VAL A 326 -1 O VAL A 323 N LEU A 309 SHEET 1 AA5 5 HIS B 71 GLU B 80 0 SHEET 2 AA5 5 MET B 2 ILE B 11 -1 N LYS B 10 O THR B 72 SHEET 3 AA5 5 LEU B 46 GLU B 54 -1 O LEU B 51 N LEU B 5 SHEET 4 AA5 5 THR B 37 LEU B 43 -1 N LEU B 41 O PHE B 48 SHEET 5 AA5 5 LYS B 94 ASN B 97 1 O ILE B 96 N LEU B 40 SHEET 1 AA6 5 GLU B 194 ILE B 199 0 SHEET 2 AA6 5 CYS B 202 THR B 208 -1 O MET B 204 N THR B 196 SHEET 3 AA6 5 GLN B 147 ILE B 158 -1 N ILE B 152 O PHE B 207 SHEET 4 AA6 5 THR B 244 SER B 260 -1 O GLY B 247 N PHE B 155 SHEET 5 AA6 5 LYS B 263 LEU B 269 -1 O ASP B 265 N MET B 258 SHEET 1 AA7 5 GLU B 194 ILE B 199 0 SHEET 2 AA7 5 CYS B 202 THR B 208 -1 O MET B 204 N THR B 196 SHEET 3 AA7 5 GLN B 147 ILE B 158 -1 N ILE B 152 O PHE B 207 SHEET 4 AA7 5 THR B 244 SER B 260 -1 O GLY B 247 N PHE B 155 SHEET 5 AA7 5 LEU B 290 PHE B 292 1 O ALA B 291 N LEU B 248 SHEET 1 AA8 2 PHE B 306 HIS B 312 0 SHEET 2 AA8 2 ILE B 321 VAL B 326 -1 O VAL B 323 N LEU B 309 LINK OD2 ASP A 157 CA CA A 405 1555 1555 2.68 LINK O ILE A 158 CA CA A 405 1555 1555 2.62 LINK OD2 ASP A 201 CA CA A 405 1555 1555 2.58 LINK CA CA A 405 O HOH A 626 1555 1555 2.76 LINK OD2 ASP B 157 CA CA B 405 1555 1555 2.57 LINK O ILE B 158 CA CA B 405 1555 1555 2.59 LINK OD2 ASP B 201 CA CA B 405 1555 1555 2.77 LINK CA CA B 405 O HOH B 514 1555 1555 2.65 SITE 1 AC1 13 TYR A 7 ILE A 23 SER A 27 ASN A 30 SITE 2 AC1 13 ASN A 31 PHE A 47 GLN A 49 LEU A 51 SITE 3 AC1 13 LEU A 61 LYS A 64 ILE A 65 ASP A 68 SITE 4 AC1 13 ARG A 70 SITE 1 AC2 5 THR A 305 VAL A 326 ASN A 327 GLU A 328 SITE 2 AC2 5 HOH A 502 SITE 1 AC3 4 ARG A 217 ALA A 302 HIS B 231 VAL B 233 SITE 1 AC4 4 LYS A 197 THR A 267 LEU A 268 GLY B 200 SITE 1 AC5 6 ASP A 157 ILE A 158 PHE A 161 ASP A 201 SITE 2 AC5 6 ARG A 284 HOH A 626 SITE 1 AC6 13 TYR B 7 ILE B 23 VAL B 26 SER B 27 SITE 2 AC6 13 ASN B 30 ASN B 31 PHE B 47 GLN B 49 SITE 3 AC6 13 LEU B 61 LYS B 64 ILE B 65 ASP B 68 SITE 4 AC6 13 ARG B 70 SITE 1 AC7 4 THR B 305 ASN B 327 GLU B 328 HOH B 583 SITE 1 AC8 2 ARG B 179 ARG B 186 SITE 1 AC9 1 HIS A 231 SITE 1 AD1 5 ASP B 157 ILE B 158 PHE B 161 ASP B 201 SITE 2 AD1 5 HOH B 514 CRYST1 48.330 56.570 78.110 104.28 104.24 102.18 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020691 0.004465 0.007016 0.00000 SCALE2 0.000000 0.018084 0.006005 0.00000 SCALE3 0.000000 0.000000 0.013917 0.00000