HEADER LYASE 12-OCT-16 5M2A TITLE STRUCTURE OF A BACTERIAL LIGHT-REGULATED ADENYLYL CYLCASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA SUBUNIT OF PHOTOACTIVATED ADENYLYL CYCLASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BEGGIATOA PHOTOACTIVATABLE ADENYLYL CYCLASE BPAC; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BEGGIATOA SP. PS; SOURCE 3 ORGANISM_TAXID: 422289; SOURCE 4 GENE: BGP_1043; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS BLUF, ADENYLYL CYCLASE, PHOTORECEPTOR, OPTOGENETICS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR R.LINDNER,E.HARTMANN,M.TARNAWSKI,A.WINKLER,D.FREY,J.REINSTEIN, AUTHOR 2 A.MEINHART,I.SCHLICHTING REVDAT 3 17-JAN-24 5M2A 1 REMARK REVDAT 2 03-MAY-17 5M2A 1 JRNL REVDAT 1 05-APR-17 5M2A 0 JRNL AUTH R.LINDNER,E.HARTMANN,M.TARNAWSKI,A.WINKLER,D.FREY, JRNL AUTH 2 J.REINSTEIN,A.MEINHART,I.SCHLICHTING JRNL TITL PHOTOACTIVATION MECHANISM OF A BACTERIAL LIGHT-REGULATED JRNL TITL 2 ADENYLYL CYCLASE. JRNL REF J. MOL. BIOL. V. 429 1336 2017 JRNL REFN ESSN 1089-8638 JRNL PMID 28336405 JRNL DOI 10.1016/J.JMB.2017.03.020 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 64689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.370 REMARK 3 FREE R VALUE TEST SET COUNT : 2182 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3739 - 4.5342 0.98 4023 123 0.1585 0.1729 REMARK 3 2 4.5342 - 3.5994 0.96 3965 119 0.1403 0.1868 REMARK 3 3 3.5994 - 3.1446 0.97 3986 119 0.1509 0.2077 REMARK 3 4 3.1446 - 2.8571 0.97 3997 121 0.1645 0.2081 REMARK 3 5 2.8571 - 2.6524 0.97 3967 119 0.1712 0.2276 REMARK 3 6 2.6524 - 2.4960 0.97 4000 118 0.1744 0.2507 REMARK 3 7 2.4960 - 2.3710 0.97 3979 125 0.1714 0.1970 REMARK 3 8 2.3710 - 2.2678 0.97 3989 116 0.1699 0.2001 REMARK 3 9 2.2678 - 2.1805 0.97 3962 120 0.1684 0.2040 REMARK 3 10 2.1805 - 2.1053 0.96 3977 121 0.1732 0.2312 REMARK 3 11 2.1053 - 2.0394 0.95 3925 116 0.1922 0.2461 REMARK 3 12 2.0394 - 1.9811 0.95 3877 102 0.1952 0.2682 REMARK 3 13 1.9811 - 1.9290 0.95 3836 183 0.2103 0.2417 REMARK 3 14 1.9290 - 1.8819 0.93 3767 198 0.2381 0.2791 REMARK 3 15 1.8819 - 1.8391 0.90 3628 191 0.2980 0.3157 REMARK 3 16 1.8391 - 1.8000 0.90 3629 191 0.3249 0.3690 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5850 REMARK 3 ANGLE : 0.717 7983 REMARK 3 CHIRALITY : 0.049 952 REMARK 3 PLANARITY : 0.004 997 REMARK 3 DIHEDRAL : 14.777 3604 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6781 -18.2277 -34.9543 REMARK 3 T TENSOR REMARK 3 T11: 0.3862 T22: 0.2667 REMARK 3 T33: 0.2360 T12: -0.0373 REMARK 3 T13: -0.0386 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.3955 L22: 2.3407 REMARK 3 L33: 4.8993 L12: 0.3339 REMARK 3 L13: 1.0912 L23: 1.2257 REMARK 3 S TENSOR REMARK 3 S11: 0.1760 S12: 0.1769 S13: -0.2900 REMARK 3 S21: -0.0534 S22: -0.1227 S23: 0.0788 REMARK 3 S31: 0.7194 S32: -0.3853 S33: -0.0196 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 147 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4998 -17.3686 1.7284 REMARK 3 T TENSOR REMARK 3 T11: 0.1436 T22: 0.1482 REMARK 3 T33: 0.1282 T12: 0.0021 REMARK 3 T13: -0.0071 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 2.2860 L22: 1.9411 REMARK 3 L33: 1.0578 L12: 0.1270 REMARK 3 L13: -0.5488 L23: -0.2238 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: -0.3012 S13: -0.0541 REMARK 3 S21: 0.1153 S22: -0.0099 S23: -0.0113 REMARK 3 S31: -0.0855 S32: 0.0395 S33: -0.0321 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1298 4.1306 -38.5401 REMARK 3 T TENSOR REMARK 3 T11: 0.3537 T22: 0.2659 REMARK 3 T33: 0.1739 T12: -0.0100 REMARK 3 T13: 0.0054 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 2.3374 L22: 2.9062 REMARK 3 L33: 5.1777 L12: 0.8216 REMARK 3 L13: -1.1412 L23: -0.4549 REMARK 3 S TENSOR REMARK 3 S11: 0.1193 S12: 0.2219 S13: 0.2477 REMARK 3 S21: -0.3015 S22: 0.0104 S23: -0.0023 REMARK 3 S31: -0.6237 S32: 0.3515 S33: -0.1026 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 127 THROUGH 347 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4356 6.5129 0.0139 REMARK 3 T TENSOR REMARK 3 T11: 0.1429 T22: 0.1344 REMARK 3 T33: 0.1545 T12: -0.0087 REMARK 3 T13: 0.0163 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 1.8520 L22: 1.8626 REMARK 3 L33: 0.9317 L12: -0.4525 REMARK 3 L13: 0.2888 L23: 0.5051 REMARK 3 S TENSOR REMARK 3 S11: -0.0647 S12: -0.1555 S13: 0.0956 REMARK 3 S21: 0.0690 S22: 0.0652 S23: 0.0800 REMARK 3 S31: 0.0378 S32: -0.0330 S33: -0.0035 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5M2A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001770. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64706 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 44.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5M27 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA-MES PH 6.5, 0.6 M NACL, 20 % REMARK 280 W/V PEG 3350; 0.3 MM ALPHA,BETA-METHYLENE-ATP IN DROP, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -153.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 316 REMARK 465 LYS A 317 REMARK 465 GLN A 318 REMARK 465 LYS A 350 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 LYS B 315 REMARK 465 GLY B 316 REMARK 465 LYS B 317 REMARK 465 GLN B 318 REMARK 465 ASN B 348 REMARK 465 ASP B 349 REMARK 465 LYS B 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 22 O HOH A 501 2.09 REMARK 500 O HOH A 619 O HOH A 761 2.12 REMARK 500 N VAL A 26 O HOH A 501 2.12 REMARK 500 O HOH B 694 O HOH B 747 2.12 REMARK 500 O HOH A 588 O HOH A 731 2.14 REMARK 500 OG1 THR A 143 O HOH A 502 2.15 REMARK 500 O HOH A 771 O HOH A 773 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 547 O HOH B 709 1655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 93 102.89 -161.59 REMARK 500 LEU B 43 116.43 -166.26 REMARK 500 MET B 93 103.31 -160.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 771 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 772 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A 773 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A 774 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH B 753 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH B 754 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH B 755 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH B 756 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH B 757 DISTANCE = 8.06 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 157 OD2 REMARK 620 2 ILE A 158 O 111.1 REMARK 620 3 ASP A 201 OD2 91.3 88.5 REMARK 620 4 HOH A 692 O 106.4 82.7 162.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 404 DBREF 5M2A A 1 350 UNP A7BT71 A7BT71_9GAMM 1 350 DBREF 5M2A B 1 350 UNP A7BT71 A7BT71_9GAMM 1 350 SEQADV 5M2A GLY A -2 UNP A7BT71 EXPRESSION TAG SEQADV 5M2A SER A -1 UNP A7BT71 EXPRESSION TAG SEQADV 5M2A HIS A 0 UNP A7BT71 EXPRESSION TAG SEQADV 5M2A GLY B -2 UNP A7BT71 EXPRESSION TAG SEQADV 5M2A SER B -1 UNP A7BT71 EXPRESSION TAG SEQADV 5M2A HIS B 0 UNP A7BT71 EXPRESSION TAG SEQRES 1 A 353 GLY SER HIS MET MET LYS ARG LEU VAL TYR ILE SER LYS SEQRES 2 A 353 ILE SER GLY HIS LEU SER LEU GLU GLU ILE GLN ARG ILE SEQRES 3 A 353 GLY LYS VAL SER ILE LYS ASN ASN GLN ARG ASP ASN ILE SEQRES 4 A 353 THR GLY VAL LEU LEU TYR LEU GLN GLY LEU PHE PHE GLN SEQRES 5 A 353 ILE LEU GLU GLY GLU ASN GLU LYS VAL ASP LYS LEU TYR SEQRES 6 A 353 LYS LYS ILE LEU VAL ASP ASP ARG HIS THR ASN ILE LEU SEQRES 7 A 353 CYS LEU LYS THR GLU TYR ASP ILE THR ASP ARG MET PHE SEQRES 8 A 353 PRO ASN TRP ALA MET LYS THR ILE ASN LEU ASN GLU ASN SEQRES 9 A 353 SER GLU LEU MET ILE GLN PRO ILE LYS SER LEU LEU GLN SEQRES 10 A 353 THR ILE THR GLN SER HIS ARG VAL LEU GLU LYS TYR MET SEQRES 11 A 353 PRO ALA ARG VAL ILE TYR LEU ILE ASN GLN GLY ILE ASN SEQRES 12 A 353 PRO LEU THR VAL GLU PRO GLN LEU VAL GLU LYS ILE ILE SEQRES 13 A 353 PHE PHE SER ASP ILE LEU ALA PHE SER THR LEU THR GLU SEQRES 14 A 353 LYS LEU PRO VAL ASN GLU VAL VAL ILE LEU VAL ASN ARG SEQRES 15 A 353 TYR PHE SER ILE CYS THR ARG ILE ILE SER ALA TYR GLY SEQRES 16 A 353 GLY GLU VAL THR LYS PHE ILE GLY ASP CYS VAL MET ALA SEQRES 17 A 353 SER PHE THR LYS GLU GLN GLY ASP ALA ALA ILE ARG THR SEQRES 18 A 353 SER LEU ASP ILE ILE SER GLU LEU LYS GLN LEU ARG HIS SEQRES 19 A 353 HIS VAL GLU ALA THR ASN PRO LEU HIS LEU LEU TYR THR SEQRES 20 A 353 GLY ILE GLY LEU SER TYR GLY HIS VAL ILE GLU GLY ASN SEQRES 21 A 353 MET GLY SER SER LEU LYS MET ASP HIS THR LEU LEU GLY SEQRES 22 A 353 ASP ALA VAL ASN VAL ALA ALA ARG LEU GLU ALA LEU THR SEQRES 23 A 353 ARG GLN LEU PRO TYR ALA LEU ALA PHE THR ALA GLY VAL SEQRES 24 A 353 LYS LYS CYS CYS GLN ALA GLN TRP THR PHE ILE ASN LEU SEQRES 25 A 353 GLY ALA HIS GLN VAL LYS GLY LYS GLN GLU ALA ILE GLU SEQRES 26 A 353 VAL TYR THR VAL ASN GLU ALA GLN LYS TYR TYR ASP THR SEQRES 27 A 353 LEU GLN ILE THR GLN LEU ILE ARG GLN THR LEU GLU ASN SEQRES 28 A 353 ASP LYS SEQRES 1 B 353 GLY SER HIS MET MET LYS ARG LEU VAL TYR ILE SER LYS SEQRES 2 B 353 ILE SER GLY HIS LEU SER LEU GLU GLU ILE GLN ARG ILE SEQRES 3 B 353 GLY LYS VAL SER ILE LYS ASN ASN GLN ARG ASP ASN ILE SEQRES 4 B 353 THR GLY VAL LEU LEU TYR LEU GLN GLY LEU PHE PHE GLN SEQRES 5 B 353 ILE LEU GLU GLY GLU ASN GLU LYS VAL ASP LYS LEU TYR SEQRES 6 B 353 LYS LYS ILE LEU VAL ASP ASP ARG HIS THR ASN ILE LEU SEQRES 7 B 353 CYS LEU LYS THR GLU TYR ASP ILE THR ASP ARG MET PHE SEQRES 8 B 353 PRO ASN TRP ALA MET LYS THR ILE ASN LEU ASN GLU ASN SEQRES 9 B 353 SER GLU LEU MET ILE GLN PRO ILE LYS SER LEU LEU GLN SEQRES 10 B 353 THR ILE THR GLN SER HIS ARG VAL LEU GLU LYS TYR MET SEQRES 11 B 353 PRO ALA ARG VAL ILE TYR LEU ILE ASN GLN GLY ILE ASN SEQRES 12 B 353 PRO LEU THR VAL GLU PRO GLN LEU VAL GLU LYS ILE ILE SEQRES 13 B 353 PHE PHE SER ASP ILE LEU ALA PHE SER THR LEU THR GLU SEQRES 14 B 353 LYS LEU PRO VAL ASN GLU VAL VAL ILE LEU VAL ASN ARG SEQRES 15 B 353 TYR PHE SER ILE CYS THR ARG ILE ILE SER ALA TYR GLY SEQRES 16 B 353 GLY GLU VAL THR LYS PHE ILE GLY ASP CYS VAL MET ALA SEQRES 17 B 353 SER PHE THR LYS GLU GLN GLY ASP ALA ALA ILE ARG THR SEQRES 18 B 353 SER LEU ASP ILE ILE SER GLU LEU LYS GLN LEU ARG HIS SEQRES 19 B 353 HIS VAL GLU ALA THR ASN PRO LEU HIS LEU LEU TYR THR SEQRES 20 B 353 GLY ILE GLY LEU SER TYR GLY HIS VAL ILE GLU GLY ASN SEQRES 21 B 353 MET GLY SER SER LEU LYS MET ASP HIS THR LEU LEU GLY SEQRES 22 B 353 ASP ALA VAL ASN VAL ALA ALA ARG LEU GLU ALA LEU THR SEQRES 23 B 353 ARG GLN LEU PRO TYR ALA LEU ALA PHE THR ALA GLY VAL SEQRES 24 B 353 LYS LYS CYS CYS GLN ALA GLN TRP THR PHE ILE ASN LEU SEQRES 25 B 353 GLY ALA HIS GLN VAL LYS GLY LYS GLN GLU ALA ILE GLU SEQRES 26 B 353 VAL TYR THR VAL ASN GLU ALA GLN LYS TYR TYR ASP THR SEQRES 27 B 353 LEU GLN ILE THR GLN LEU ILE ARG GLN THR LEU GLU ASN SEQRES 28 B 353 ASP LYS HET CL A 401 1 HET CL A 402 1 HET CL A 403 1 HET FMN A 404 31 HET MG A 405 1 HET CL B 401 1 HET FMN B 402 31 HET CL B 403 1 HET CL B 404 1 HETNAM CL CHLORIDE ION HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM MG MAGNESIUM ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 CL 6(CL 1-) FORMUL 6 FMN 2(C17 H21 N4 O9 P) FORMUL 7 MG MG 2+ FORMUL 12 HOH *531(H2 O) HELIX 1 AA1 SER A 16 ASP A 34 1 19 HELIX 2 AA2 ASN A 55 VAL A 67 1 13 HELIX 3 AA3 ASN A 99 ASN A 101 5 3 HELIX 4 AA4 ILE A 106 MET A 127 1 22 HELIX 5 AA5 PRO A 128 GLN A 137 1 10 HELIX 6 AA6 ASN A 140 VAL A 144 5 5 HELIX 7 AA7 ALA A 160 LEU A 168 1 9 HELIX 8 AA8 PRO A 169 TYR A 191 1 23 HELIX 9 AA9 GLN A 211 VAL A 233 1 23 HELIX 10 AB1 ASN A 237 LEU A 242 5 6 HELIX 11 AB2 GLY A 270 THR A 283 1 14 HELIX 12 AB3 ARG A 284 LEU A 286 5 3 HELIX 13 AB4 ALA A 294 CYS A 299 1 6 HELIX 14 AB5 GLU A 328 GLN A 330 5 3 HELIX 15 AB6 ASP A 334 GLU A 347 1 14 HELIX 16 AB7 SER B 16 ASP B 34 1 19 HELIX 17 AB8 ASN B 55 VAL B 67 1 13 HELIX 18 AB9 ASN B 99 ASN B 101 5 3 HELIX 19 AC1 ILE B 106 TYR B 126 1 21 HELIX 20 AC2 PRO B 128 GLN B 137 1 10 HELIX 21 AC3 ALA B 160 LEU B 168 1 9 HELIX 22 AC4 PRO B 169 TYR B 191 1 23 HELIX 23 AC5 GLN B 211 VAL B 233 1 23 HELIX 24 AC6 ASN B 237 LEU B 242 5 6 HELIX 25 AC7 GLY B 270 THR B 283 1 14 HELIX 26 AC8 ARG B 284 LEU B 286 5 3 HELIX 27 AC9 ALA B 294 CYS B 299 1 6 HELIX 28 AD1 GLU B 328 GLN B 330 5 3 HELIX 29 AD2 ASP B 334 LEU B 346 1 13 SHEET 1 AA1 5 HIS A 71 GLU A 80 0 SHEET 2 AA1 5 MET A 2 ILE A 11 -1 N ARG A 4 O GLU A 80 SHEET 3 AA1 5 LEU A 46 GLU A 54 -1 O GLY A 53 N LYS A 3 SHEET 4 AA1 5 THR A 37 LEU A 43 -1 N LEU A 41 O PHE A 48 SHEET 5 AA1 5 LYS A 94 ASN A 97 1 O LYS A 94 N LEU A 40 SHEET 1 AA2 5 GLU A 194 ILE A 199 0 SHEET 2 AA2 5 CYS A 202 THR A 208 -1 O MET A 204 N THR A 196 SHEET 3 AA2 5 GLN A 147 ILE A 158 -1 N PHE A 154 O ALA A 205 SHEET 4 AA2 5 THR A 244 SER A 260 -1 O VAL A 253 N VAL A 149 SHEET 5 AA2 5 LYS A 263 LEU A 269 -1 O LEU A 269 N ILE A 254 SHEET 1 AA3 7 GLU A 194 ILE A 199 0 SHEET 2 AA3 7 CYS A 202 THR A 208 -1 O MET A 204 N THR A 196 SHEET 3 AA3 7 GLN A 147 ILE A 158 -1 N PHE A 154 O ALA A 205 SHEET 4 AA3 7 THR A 244 SER A 260 -1 O VAL A 253 N VAL A 149 SHEET 5 AA3 7 LEU A 290 THR A 293 1 O ALA A 291 N ILE A 246 SHEET 6 AA3 7 ILE A 321 VAL A 326 -1 O TYR A 324 N PHE A 292 SHEET 7 AA3 7 PHE A 306 HIS A 312 -1 N HIS A 312 O ILE A 321 SHEET 1 AA4 5 HIS B 71 TYR B 81 0 SHEET 2 AA4 5 MET B 2 ILE B 11 -1 N ARG B 4 O GLU B 80 SHEET 3 AA4 5 LEU B 46 GLU B 54 -1 O GLY B 53 N LYS B 3 SHEET 4 AA4 5 THR B 37 LEU B 43 -1 N LEU B 41 O PHE B 48 SHEET 5 AA4 5 LYS B 94 ASN B 97 1 O LYS B 94 N LEU B 40 SHEET 1 AA5 5 GLU B 194 ILE B 199 0 SHEET 2 AA5 5 CYS B 202 THR B 208 -1 O MET B 204 N THR B 196 SHEET 3 AA5 5 GLN B 147 ILE B 158 -1 N PHE B 154 O ALA B 205 SHEET 4 AA5 5 THR B 244 SER B 260 -1 O VAL B 253 N VAL B 149 SHEET 5 AA5 5 LYS B 263 LEU B 269 -1 O LEU B 269 N ILE B 254 SHEET 1 AA6 7 GLU B 194 ILE B 199 0 SHEET 2 AA6 7 CYS B 202 THR B 208 -1 O MET B 204 N THR B 196 SHEET 3 AA6 7 GLN B 147 ILE B 158 -1 N PHE B 154 O ALA B 205 SHEET 4 AA6 7 THR B 244 SER B 260 -1 O VAL B 253 N VAL B 149 SHEET 5 AA6 7 LEU B 290 THR B 293 1 O ALA B 291 N LEU B 248 SHEET 6 AA6 7 ILE B 321 VAL B 326 -1 O TYR B 324 N PHE B 292 SHEET 7 AA6 7 PHE B 306 HIS B 312 -1 N LEU B 309 O VAL B 323 LINK OD2 ASP A 157 MG MG A 405 1555 1555 2.97 LINK O ILE A 158 MG MG A 405 1555 1555 2.53 LINK OD2 ASP A 201 MG MG A 405 1555 1555 2.62 LINK MG MG A 405 O HOH A 692 1555 1555 2.14 SITE 1 AC1 3 THR A 305 ASN A 327 GLU A 328 SITE 1 AC2 3 GLN A 44 GLY A 45 ASN A 99 SITE 1 AC3 3 ARG A 230 TYR A 332 HOH A 581 SITE 1 AC4 16 TYR A 7 ILE A 23 SER A 27 ASN A 30 SITE 2 AC4 16 ASN A 31 PHE A 47 GLN A 49 LEU A 51 SITE 3 AC4 16 LEU A 61 LYS A 64 ILE A 65 ASP A 68 SITE 4 AC4 16 ARG A 70 HOH A 505 HOH A 606 HOH A 618 SITE 1 AC5 6 ASP A 157 ILE A 158 PHE A 161 ASP A 201 SITE 2 AC5 6 ARG A 284 HOH A 692 SITE 1 AC6 3 THR B 305 ASN B 327 GLU B 328 SITE 1 AC7 16 HOH A 546 TYR B 7 SER B 27 ASN B 30 SITE 2 AC7 16 ASN B 31 PHE B 47 GLN B 49 LEU B 51 SITE 3 AC7 16 LEU B 61 LYS B 64 ILE B 65 ASP B 68 SITE 4 AC7 16 ARG B 70 HIS B 71 MET B 93 HOH B 510 SITE 1 AC8 3 ALA B 160 ARG B 284 HOH B 650 SITE 1 AC9 5 ARG B 230 TYR B 332 HOH B 587 HOH B 599 SITE 2 AC9 5 HOH B 735 CRYST1 47.700 56.200 78.000 104.10 103.90 102.20 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020964 0.004533 0.006937 0.00000 SCALE2 0.000000 0.018205 0.005942 0.00000 SCALE3 0.000000 0.000000 0.013893 0.00000