HEADER RNA BINDING PROTEIN 13-OCT-16 5M2N TITLE CRYSTAL STRUCTURE OF ELONGATOR SUBUNIT ELP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATOR COMPLEX PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GAMMA-TOXIN TARGET 2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: ELP2, TOT2, YGR200C, G7725; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: GOLD PLYSS AG KEYWDS ELONGATOR, TRNA MODIFCATION, ELP2, WD40, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.GLATT,C.W.MUELLER REVDAT 3 06-SEP-17 5M2N 1 REMARK REVDAT 2 15-FEB-17 5M2N 1 JRNL REVDAT 1 28-DEC-16 5M2N 0 JRNL AUTH M.I.DAUDEN,J.KOSINSKI,O.KOLAJ-ROBIN,A.DESFOSSES,A.ORI, JRNL AUTH 2 C.FAUX,N.A.HOFFMANN,O.F.ONUMA,K.D.BREUNIG,M.BECK,C.SACHSE, JRNL AUTH 3 B.SERAPHIN,S.GLATT,C.W.MULLER JRNL TITL ARCHITECTURE OF THE YEAST ELONGATOR COMPLEX. JRNL REF EMBO REP. V. 18 264 2017 JRNL REFN ESSN 1469-3178 JRNL PMID 27974378 JRNL DOI 10.15252/EMBR.201643353 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.560 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 45798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9005 - 7.0785 1.00 2735 143 0.2094 0.2490 REMARK 3 2 7.0785 - 5.6212 1.00 2715 148 0.1977 0.2304 REMARK 3 3 5.6212 - 4.9115 1.00 2737 145 0.1664 0.2170 REMARK 3 4 4.9115 - 4.4628 1.00 2711 143 0.1417 0.1732 REMARK 3 5 4.4628 - 4.1431 1.00 2742 143 0.1505 0.1845 REMARK 3 6 4.1431 - 3.8989 1.00 2749 137 0.1753 0.2066 REMARK 3 7 3.8989 - 3.7038 1.00 2732 139 0.1871 0.2348 REMARK 3 8 3.7038 - 3.5426 1.00 2736 142 0.1927 0.2225 REMARK 3 9 3.5426 - 3.4062 1.00 2732 143 0.2021 0.2223 REMARK 3 10 3.4062 - 3.2887 1.00 2701 144 0.2117 0.2622 REMARK 3 11 3.2887 - 3.1859 1.00 2702 136 0.2252 0.3085 REMARK 3 12 3.1859 - 3.0949 1.00 2769 150 0.2516 0.2965 REMARK 3 13 3.0949 - 3.0134 1.00 2730 142 0.2511 0.2679 REMARK 3 14 3.0134 - 2.9399 1.00 2679 141 0.2663 0.2906 REMARK 3 15 2.9399 - 2.8731 1.00 2756 147 0.2767 0.2956 REMARK 3 16 2.8731 - 2.8119 0.95 2594 136 0.3241 0.3403 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5881 REMARK 3 ANGLE : 0.557 7966 REMARK 3 CHIRALITY : 0.046 875 REMARK 3 PLANARITY : 0.003 1003 REMARK 3 DIHEDRAL : 12.587 3465 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6979 54.5537 237.9629 REMARK 3 T TENSOR REMARK 3 T11: 0.1662 T22: 0.2428 REMARK 3 T33: 0.2147 T12: 0.0259 REMARK 3 T13: -0.0000 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.0142 L22: 4.9621 REMARK 3 L33: 1.5501 L12: 1.1914 REMARK 3 L13: -0.2564 L23: -0.6863 REMARK 3 S TENSOR REMARK 3 S11: -0.0733 S12: 0.0322 S13: -0.0043 REMARK 3 S21: -0.1339 S22: 0.0298 S23: 0.2210 REMARK 3 S31: 0.1816 S32: -0.2000 S33: 0.0318 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 173 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9163 37.7772 238.3973 REMARK 3 T TENSOR REMARK 3 T11: 0.4771 T22: 0.2121 REMARK 3 T33: 0.2529 T12: 0.0721 REMARK 3 T13: -0.0109 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 6.8234 L22: 2.0118 REMARK 3 L33: 1.4123 L12: 0.8146 REMARK 3 L13: -0.3926 L23: -0.1395 REMARK 3 S TENSOR REMARK 3 S11: -0.1316 S12: 0.0755 S13: -0.3597 REMARK 3 S21: 0.0399 S22: 0.0631 S23: -0.1110 REMARK 3 S31: 0.3848 S32: 0.0905 S33: 0.0139 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 325 THROUGH 460 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7938 72.6398 241.7730 REMARK 3 T TENSOR REMARK 3 T11: 0.1226 T22: 0.2993 REMARK 3 T33: 0.2851 T12: 0.0583 REMARK 3 T13: -0.0153 T23: 0.0495 REMARK 3 L TENSOR REMARK 3 L11: 0.9689 L22: 4.2056 REMARK 3 L33: 1.8094 L12: 0.1664 REMARK 3 L13: 0.1546 L23: 0.6584 REMARK 3 S TENSOR REMARK 3 S11: 0.0849 S12: 0.0135 S13: -0.0897 REMARK 3 S21: 0.0104 S22: -0.0877 S23: -0.3940 REMARK 3 S31: 0.1215 S32: 0.3809 S33: -0.0159 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 461 THROUGH 788 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9061 90.6546 252.2966 REMARK 3 T TENSOR REMARK 3 T11: 0.2610 T22: 0.1813 REMARK 3 T33: 0.1927 T12: 0.0206 REMARK 3 T13: -0.0011 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 2.0261 L22: 1.7416 REMARK 3 L33: 1.9865 L12: -0.1509 REMARK 3 L13: -0.2687 L23: 0.6082 REMARK 3 S TENSOR REMARK 3 S11: 0.0756 S12: -0.0093 S13: 0.1569 REMARK 3 S21: 0.0610 S22: -0.0545 S23: 0.0141 REMARK 3 S31: -0.2313 S32: 0.1255 S33: -0.0259 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5M2N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001808. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45798 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.81900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 7.5; 10% PEG 6K; 1750 REMARK 280 MM NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 177.38333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 354.76667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 266.07500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 443.45833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 88.69167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 177.38333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 354.76667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 443.45833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 266.07500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 88.69167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 VAL A 2 REMARK 465 ASP A 242 REMARK 465 ASP A 243 REMARK 465 SER A 244 REMARK 465 GLU A 245 REMARK 465 GLU A 246 REMARK 465 ASP A 247 REMARK 465 SER A 248 REMARK 465 LYS A 249 REMARK 465 LYS A 250 REMARK 465 LEU A 251 REMARK 465 THR A 252 REMARK 465 LEU A 253 REMARK 465 LEU A 254 REMARK 465 MSE A 326 REMARK 465 SER A 327 REMARK 465 SER A 328 REMARK 465 LYS A 329 REMARK 465 GLY A 330 REMARK 465 ALA A 331 REMARK 465 SER A 332 REMARK 465 THR A 333 REMARK 465 ALA A 334 REMARK 465 THR A 335 REMARK 465 GLY A 336 REMARK 465 SER A 337 REMARK 465 SER A 338 REMARK 465 GLU A 484 REMARK 465 GLU A 485 REMARK 465 LYS A 486 REMARK 465 SER A 487 REMARK 465 GLU A 488 REMARK 465 MSE A 489 REMARK 465 PRO A 490 REMARK 465 ASP A 491 REMARK 465 SER A 492 REMARK 465 ALA A 493 REMARK 465 THR A 494 REMARK 465 VAL A 495 REMARK 465 PRO A 496 REMARK 465 VAL A 497 REMARK 465 LEU A 498 REMARK 465 GLY A 499 REMARK 465 LEU A 500 REMARK 465 SER A 501 REMARK 465 ASN A 502 REMARK 465 LYS A 503 REMARK 465 ALA A 504 REMARK 465 GLY A 505 REMARK 465 GLU A 506 REMARK 465 ASP A 507 REMARK 465 ASP A 508 REMARK 465 ALA A 509 REMARK 465 ASN A 510 REMARK 465 GLU A 511 REMARK 465 ASP A 512 REMARK 465 ASP A 513 REMARK 465 GLU A 514 REMARK 465 GLU A 515 REMARK 465 GLU A 516 REMARK 465 GLU A 517 REMARK 465 GLY A 518 REMARK 465 GLY A 519 REMARK 465 ASN A 520 REMARK 465 LYS A 521 REMARK 465 GLU A 522 REMARK 465 THR A 523 REMARK 465 PRO A 524 REMARK 465 ASP A 525 REMARK 465 ILE A 526 REMARK 465 THR A 527 REMARK 465 ASP A 528 REMARK 465 PRO A 529 REMARK 465 LEU A 530 REMARK 465 SER A 531 REMARK 465 LEU A 532 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 424 O HOH A 802 1.43 REMARK 500 H GLU A 716 O HOH A 803 1.46 REMARK 500 HG SER A 579 O GLN A 583 1.54 REMARK 500 OE2 GLU A 446 HH22 ARG A 759 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 16 67.02 -102.99 REMARK 500 ASP A 90 -162.78 -128.46 REMARK 500 HIS A 142 141.35 -178.90 REMARK 500 PHE A 150 38.07 -92.27 REMARK 500 LYS A 164 1.02 85.48 REMARK 500 ARG A 228 -0.25 79.43 REMARK 500 ASN A 238 -38.26 72.83 REMARK 500 ASP A 239 60.06 -103.55 REMARK 500 ASN A 256 152.85 65.03 REMARK 500 GLN A 258 119.97 -175.28 REMARK 500 GLU A 266 12.79 -144.07 REMARK 500 MSE A 278 -133.76 64.31 REMARK 500 HIS A 280 28.19 -145.26 REMARK 500 ASP A 281 49.11 -144.45 REMARK 500 ASP A 282 -169.85 60.69 REMARK 500 THR A 303 52.37 70.52 REMARK 500 ARG A 351 -8.73 72.02 REMARK 500 THR A 357 142.07 -172.91 REMARK 500 ASN A 372 -8.33 -58.48 REMARK 500 GLN A 407 30.36 77.60 REMARK 500 PRO A 536 176.43 -57.08 REMARK 500 ARG A 544 16.83 -158.61 REMARK 500 LEU A 546 31.95 -96.92 REMARK 500 VAL A 582 -77.29 -115.40 REMARK 500 PRO A 600 90.11 -62.97 REMARK 500 HIS A 605 31.50 -97.89 REMARK 500 ARG A 628 5.41 84.67 REMARK 500 LEU A 736 107.94 -47.32 REMARK 500 LEU A 778 -3.25 92.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 598 LYS A 599 -149.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XFV RELATED DB: PDB DBREF 5M2N A 1 788 UNP P42935 ELP2_YEAST 1 788 SEQRES 1 A 788 MSE VAL GLU CYS ILE THR PRO GLU ALA ILE PHE ILE GLY SEQRES 2 A 788 ALA ASN LYS GLN THR GLN VAL SER ASP ILE HIS LYS VAL SEQRES 3 A 788 LYS LYS ILE VAL ALA PHE GLY ALA GLY LYS THR ILE ALA SEQRES 4 A 788 LEU TRP ASP PRO ILE GLU PRO ASN ASN LYS GLY VAL TYR SEQRES 5 A 788 ALA THR LEU LYS GLY HIS GLU ALA GLU VAL THR CYS VAL SEQRES 6 A 788 ARG PHE VAL PRO ASP SER ASP PHE MSE VAL SER ALA SER SEQRES 7 A 788 GLU ASP HIS HIS VAL LYS ILE TRP LYS PHE THR ASP TYR SEQRES 8 A 788 SER HIS LEU GLN CYS ILE GLN THR ILE GLN HIS TYR SER SEQRES 9 A 788 LYS THR ILE VAL ALA LEU SER ALA LEU PRO SER LEU ILE SEQRES 10 A 788 SER VAL GLY CYS ALA ASP GLY THR ILE SER ILE TRP ARG SEQRES 11 A 788 GLN ASN ILE GLN ASN ASP GLU PHE GLY LEU ALA HIS GLU SEQRES 12 A 788 PHE THR ILE LYS LYS GLY PHE PHE TYR PRO LEU CYS LEU SEQRES 13 A 788 SER LEU SER LYS VAL GLU GLU LYS LYS TYR LEU LEU ALA SEQRES 14 A 788 ILE GLY GLY THR ASN VAL ASN VAL PHE ILE ALA SER PHE SEQRES 15 A 788 ILE LEU SER ASP SER GLY ILE GLU LYS CYS ARG VAL VAL SEQRES 16 A 788 ALA GLU LEU GLU GLY HIS GLU ASP TRP VAL LYS SER LEU SEQRES 17 A 788 ALA PHE ARG HIS GLN GLU THR PRO GLY ASP TYR LEU LEU SEQRES 18 A 788 CYS SER GLY SER GLN ASP ARG TYR ILE ARG LEU TRP ARG SEQRES 19 A 788 ILE ARG ILE ASN ASP LEU ILE ASP ASP SER GLU GLU ASP SEQRES 20 A 788 SER LYS LYS LEU THR LEU LEU SER ASN LYS GLN TYR LYS SEQRES 21 A 788 PHE GLN ILE ASP ASP GLU LEU ARG VAL GLY ILE ASN PHE SEQRES 22 A 788 GLU ALA LEU ILE MSE GLY HIS ASP ASP TRP ILE SER SER SEQRES 23 A 788 LEU GLN TRP HIS GLU SER ARG LEU GLN LEU LEU ALA ALA SEQRES 24 A 788 THR ALA ASP THR SER LEU MSE VAL TRP GLU PRO ASP GLU SEQRES 25 A 788 THR SER GLY ILE TRP VAL CYS SER LEU ARG LEU GLY GLU SEQRES 26 A 788 MSE SER SER LYS GLY ALA SER THR ALA THR GLY SER SER SEQRES 27 A 788 GLY GLY PHE TRP SER CYS LEU TRP PHE THR HIS GLU ARG SEQRES 28 A 788 MSE ASP PHE PHE LEU THR ASN GLY LYS THR GLY SER TRP SEQRES 29 A 788 ARG MSE TRP ALA THR LYS ASP ASN ILE ILE CYS ASP GLN SEQRES 30 A 788 ARG LEU GLY ILE SER GLY ALA THR LYS ASP VAL THR ASP SEQRES 31 A 788 ILE ALA TRP SER PRO SER GLY GLU TYR LEU LEU ALA THR SEQRES 32 A 788 SER LEU ASP GLN THR THR ARG LEU PHE ALA PRO TRP ILE SEQRES 33 A 788 TYR ASP ALA SER GLY ARG LYS ARG GLU ILE ALA THR TRP SEQRES 34 A 788 HIS GLU PHE SER ARG PRO GLN ILE HIS GLY TYR ASP MSE SEQRES 35 A 788 ILE CYS VAL GLU THR VAL THR ASP THR ARG PHE VAL SER SEQRES 36 A 788 GLY GLY ASP GLU LYS ILE LEU ARG SER PHE ASP LEU PRO SEQRES 37 A 788 LYS GLY VAL ALA GLY MSE LEU GLN LYS PHE VAL GLY ILE SEQRES 38 A 788 GLN PHE GLU GLU LYS SER GLU MSE PRO ASP SER ALA THR SEQRES 39 A 788 VAL PRO VAL LEU GLY LEU SER ASN LYS ALA GLY GLU ASP SEQRES 40 A 788 ASP ALA ASN GLU ASP ASP GLU GLU GLU GLU GLY GLY ASN SEQRES 41 A 788 LYS GLU THR PRO ASP ILE THR ASP PRO LEU SER LEU LEU SEQRES 42 A 788 GLU CYS PRO PRO MSE GLU ASP GLN LEU GLN ARG HIS LEU SEQRES 43 A 788 LEU TRP PRO GLU VAL GLU LYS LEU TYR GLY HIS GLY PHE SEQRES 44 A 788 GLU ILE THR CYS LEU ASP ILE SER PRO ASP GLN LYS LEU SEQRES 45 A 788 ILE ALA SER ALA CYS ARG SER ASN ASN VAL GLN ASN ALA SEQRES 46 A 788 VAL ILE ARG ILE PHE SER THR GLU ASN TRP LEU GLU ILE SEQRES 47 A 788 LYS PRO ALA LEU PRO PHE HIS SER LEU THR ILE THR ARG SEQRES 48 A 788 LEU LYS PHE SER LYS ASP GLY LYS PHE LEU LEU SER VAL SEQRES 49 A 788 CYS ARG ASP ARG LYS TRP ALA LEU TRP GLU ARG ASN MSE SEQRES 50 A 788 GLU ASP ASN THR PHE GLU LEU ARG PHE LYS ASN GLU LYS SEQRES 51 A 788 PRO HIS THR ARG ILE ILE TRP ASP ALA ASP TRP ALA PRO SEQRES 52 A 788 LEU GLU PHE GLY ASN VAL PHE VAL THR ALA SER ARG ASP SEQRES 53 A 788 LYS THR VAL LYS VAL TRP ARG HIS GLN LYS GLU PRO ALA SEQRES 54 A 788 ASP ASP TYR VAL LEU GLU ALA SER ILE LYS HIS THR LYS SEQRES 55 A 788 ALA VAL THR ALA ILE SER ILE HIS ASP SER MSE ILE ARG SEQRES 56 A 788 GLU LYS ILE LEU ILE SER VAL GLY LEU GLU ASN GLY GLU SEQRES 57 A 788 ILE TYR LEU TYR SER TYR THR LEU GLY LYS PHE GLU LEU SEQRES 58 A 788 ILE THR GLN LEU ASN GLU ASP ILE THR PRO ALA ASP LYS SEQRES 59 A 788 ILE THR ARG LEU ARG TRP SER HIS LEU LYS ARG ASN GLY SEQRES 60 A 788 LYS LEU PHE LEU GLY VAL GLY SER SER ASP LEU SER THR SEQRES 61 A 788 ARG ILE TYR SER LEU ALA TYR GLU MODRES 5M2N MSE A 74 MET MODIFIED RESIDUE MODRES 5M2N MSE A 278 MET MODIFIED RESIDUE MODRES 5M2N MSE A 306 MET MODIFIED RESIDUE MODRES 5M2N MSE A 352 MET MODIFIED RESIDUE MODRES 5M2N MSE A 366 MET MODIFIED RESIDUE MODRES 5M2N MSE A 442 MET MODIFIED RESIDUE MODRES 5M2N MSE A 474 MET MODIFIED RESIDUE MODRES 5M2N MSE A 538 MET MODIFIED RESIDUE MODRES 5M2N MSE A 637 MET MODIFIED RESIDUE MODRES 5M2N MSE A 713 MET MODIFIED RESIDUE HET MSE A 74 17 HET MSE A 278 17 HET MSE A 306 17 HET MSE A 352 17 HET MSE A 366 17 HET MSE A 442 17 HET MSE A 474 17 HET MSE A 538 17 HET MSE A 637 17 HET MSE A 713 17 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 HOH *23(H2 O) HELIX 1 AA1 PRO A 468 GLY A 480 1 13 HELIX 2 AA2 MSE A 538 HIS A 545 1 8 HELIX 3 AA3 PRO A 663 GLY A 667 5 5 SHEET 1 AA1 4 CYS A 4 PHE A 11 0 SHEET 2 AA1 4 THR A 780 ALA A 786 -1 O THR A 780 N PHE A 11 SHEET 3 AA1 4 LYS A 768 SER A 775 -1 N LEU A 769 O LEU A 785 SHEET 4 AA1 4 ILE A 755 TRP A 760 -1 N ARG A 759 O GLY A 772 SHEET 1 AA2 4 SER A 21 ILE A 23 0 SHEET 2 AA2 4 VAL A 30 ALA A 34 -1 O ALA A 31 N ASP A 22 SHEET 3 AA2 4 THR A 37 TRP A 41 -1 O TRP A 41 N VAL A 30 SHEET 4 AA2 4 VAL A 51 LEU A 55 -1 O LEU A 55 N ILE A 38 SHEET 1 AA3 4 VAL A 62 PHE A 67 0 SHEET 2 AA3 4 PHE A 73 SER A 78 -1 O VAL A 75 N ARG A 66 SHEET 3 AA3 4 VAL A 83 PHE A 88 -1 O TRP A 86 N MSE A 74 SHEET 4 AA3 4 LEU A 94 ILE A 100 -1 O ILE A 100 N VAL A 83 SHEET 1 AA4 4 ILE A 107 LEU A 113 0 SHEET 2 AA4 4 LEU A 116 CYS A 121 -1 O SER A 118 N SER A 111 SHEET 3 AA4 4 THR A 125 GLN A 131 -1 O TRP A 129 N ILE A 117 SHEET 4 AA4 4 PHE A 138 THR A 145 -1 O HIS A 142 N ILE A 128 SHEET 1 AA5 4 PRO A 153 GLU A 162 0 SHEET 2 AA5 4 LYS A 165 GLY A 172 -1 O GLY A 171 N LEU A 154 SHEET 3 AA5 4 VAL A 177 SER A 185 -1 O PHE A 178 N ILE A 170 SHEET 4 AA5 4 GLY A 188 LEU A 198 -1 O LEU A 198 N VAL A 177 SHEET 1 AA6 5 VAL A 205 PHE A 210 0 SHEET 2 AA6 5 ASP A 218 SER A 225 -1 O GLY A 224 N SER A 207 SHEET 3 AA6 5 TYR A 229 ILE A 237 -1 O ILE A 235 N TYR A 219 SHEET 4 AA6 5 LEU A 267 MSE A 278 -1 O GLU A 274 N LEU A 232 SHEET 5 AA6 5 TYR A 259 ASP A 264 -1 N TYR A 259 O ILE A 271 SHEET 1 AA7 4 ILE A 284 TRP A 289 0 SHEET 2 AA7 4 LEU A 296 THR A 300 -1 O LEU A 297 N GLN A 288 SHEET 3 AA7 4 SER A 304 PRO A 310 -1 O TRP A 308 N LEU A 296 SHEET 4 AA7 4 TRP A 317 GLY A 324 -1 O SER A 320 N VAL A 307 SHEET 1 AA8 4 CYS A 344 HIS A 349 0 SHEET 2 AA8 4 MSE A 352 ASN A 358 -1 O PHE A 354 N PHE A 347 SHEET 3 AA8 4 TRP A 364 THR A 369 -1 O ARG A 365 N THR A 357 SHEET 4 AA8 4 ASP A 376 ILE A 381 -1 O ILE A 381 N TRP A 364 SHEET 1 AA9 4 VAL A 388 TRP A 393 0 SHEET 2 AA9 4 LEU A 400 SER A 404 -1 O LEU A 401 N ALA A 392 SHEET 3 AA9 4 THR A 408 PRO A 414 -1 O PHE A 412 N LEU A 400 SHEET 4 AA9 4 TRP A 429 GLN A 436 -1 O SER A 433 N LEU A 411 SHEET 1 AB1 4 MSE A 442 THR A 447 0 SHEET 2 AB1 4 ARG A 452 GLY A 457 -1 O VAL A 454 N GLU A 446 SHEET 3 AB1 4 ILE A 461 ASP A 466 -1 O ARG A 463 N SER A 455 SHEET 4 AB1 4 GLU A 550 TYR A 555 -1 O LEU A 554 N LEU A 462 SHEET 1 AB2 4 ILE A 561 ILE A 566 0 SHEET 2 AB2 4 LEU A 572 CYS A 577 -1 O ALA A 576 N CYS A 563 SHEET 3 AB2 4 VAL A 586 SER A 591 -1 O ARG A 588 N SER A 575 SHEET 4 AB2 4 GLU A 597 PRO A 603 -1 O ILE A 598 N ILE A 589 SHEET 1 AB3 4 ILE A 609 PHE A 614 0 SHEET 2 AB3 4 PHE A 620 CYS A 625 -1 O LEU A 622 N LYS A 613 SHEET 3 AB3 4 TRP A 630 ASN A 636 -1 O TRP A 633 N LEU A 621 SHEET 4 AB3 4 THR A 641 ASN A 648 -1 O THR A 641 N ASN A 636 SHEET 1 AB4 4 ILE A 656 TRP A 661 0 SHEET 2 AB4 4 VAL A 669 SER A 674 -1 O VAL A 671 N ASP A 660 SHEET 3 AB4 4 THR A 678 GLN A 685 -1 O TRP A 682 N PHE A 670 SHEET 4 AB4 4 ASP A 691 LYS A 699 -1 O GLU A 695 N VAL A 681 SHEET 1 AB5 4 VAL A 704 ILE A 709 0 SHEET 2 AB5 4 ILE A 718 LEU A 724 -1 O GLY A 723 N ALA A 706 SHEET 3 AB5 4 ILE A 729 THR A 735 -1 O TYR A 732 N ILE A 720 SHEET 4 AB5 4 LYS A 738 GLN A 744 -1 O LYS A 738 N THR A 735 LINK C PHE A 73 N MSE A 74 1555 1555 1.33 LINK C MSE A 74 N VAL A 75 1555 1555 1.33 LINK C ILE A 277 N MSE A 278 1555 1555 1.33 LINK C MSE A 278 N GLY A 279 1555 1555 1.33 LINK C LEU A 305 N MSE A 306 1555 1555 1.33 LINK C MSE A 306 N VAL A 307 1555 1555 1.33 LINK C ARG A 351 N MSE A 352 1555 1555 1.33 LINK C MSE A 352 N ASP A 353 1555 1555 1.33 LINK C ARG A 365 N MSE A 366 1555 1555 1.33 LINK C MSE A 366 N TRP A 367 1555 1555 1.33 LINK C ASP A 441 N MSE A 442 1555 1555 1.33 LINK C MSE A 442 N ILE A 443 1555 1555 1.33 LINK C GLY A 473 N MSE A 474 1555 1555 1.33 LINK C MSE A 474 N LEU A 475 1555 1555 1.33 LINK C PRO A 537 N MSE A 538 1555 1555 1.33 LINK C MSE A 538 N GLU A 539 1555 1555 1.34 LINK C ASN A 636 N MSE A 637 1555 1555 1.33 LINK C MSE A 637 N GLU A 638 1555 1555 1.33 LINK C SER A 712 N MSE A 713 1555 1555 1.33 LINK C MSE A 713 N ILE A 714 1555 1555 1.33 CISPEP 1 GLU A 291 SER A 292 0 5.97 CISPEP 2 PRO A 688 ALA A 689 0 2.72 CRYST1 79.690 79.690 532.150 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012549 0.007245 0.000000 0.00000 SCALE2 0.000000 0.014490 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001879 0.00000