HEADER PEPTIDOGLYCAN-BINDING PROTEIN 14-OCT-16 5M3G OBSLTE 04-AUG-21 5M3G 7BBA TITLE STRUCTURE OF THE TAGL PEPTIDOGLYCAN BINDING DOMAIN FROM EAEC T6SS COMPND MOL_ID: 1; COMPND 2 MOLECULE: OMPA FAMILY PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: ACU81_04615; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS T6SS TAGL PEPTIDOGLYCAN BINDING DOMAIN DIAMINOPIMELATE, KEYWDS 2 PEPTIDOGLYCAN-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CAMBILLAU,V.S.NGUYEN,S.SPINELLI,E.CASCALES REVDAT 2 04-AUG-21 5M3G 1 OBSLTE REVDAT 1 21-FEB-18 5M3G 0 JRNL AUTH C.CAMBILLAU,V.S.NGUYEN,E.CASCALES JRNL TITL STRUCTURE OF THE TAGL PEPTIDOGLYCAN BINDING DOMAIN FROM EAEC JRNL TITL 2 T6SS IN COMPLEX WITH DIAMINOPIMELATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1089 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.43 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2889 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2293 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2745 REMARK 3 BIN R VALUE (WORKING SET) : 0.2276 REMARK 3 BIN FREE R VALUE : 0.2598 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.98 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 144 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3386 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 154 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.35830 REMARK 3 B22 (A**2) : -5.35830 REMARK 3 B33 (A**2) : 10.71670 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.415 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.363 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.228 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.373 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.234 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3486 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4751 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1170 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 78 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 512 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3486 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 456 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3768 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.16 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.86 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.08 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 7.5882 19.6205 -0.5363 REMARK 3 T TENSOR REMARK 3 T11: 0.0716 T22: -0.1438 REMARK 3 T33: -0.0584 T12: -0.0825 REMARK 3 T13: -0.0420 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 2.2337 L22: -0.0215 REMARK 3 L33: 3.4371 L12: -0.4617 REMARK 3 L13: -1.7069 L23: -0.9634 REMARK 3 S TENSOR REMARK 3 S11: 0.0164 S12: 0.1417 S13: -0.0831 REMARK 3 S21: -0.0135 S22: -0.1215 S23: -0.0878 REMARK 3 S31: -0.1592 S32: 0.0037 S33: 0.1051 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -11.0074 19.8572 13.8797 REMARK 3 T TENSOR REMARK 3 T11: 0.1164 T22: -0.1523 REMARK 3 T33: -0.0749 T12: 0.1104 REMARK 3 T13: 0.0657 T23: 0.0634 REMARK 3 L TENSOR REMARK 3 L11: 3.5500 L22: -0.1800 REMARK 3 L33: 1.5322 L12: -0.0441 REMARK 3 L13: -1.6807 L23: 0.5394 REMARK 3 S TENSOR REMARK 3 S11: 0.0821 S12: -0.1614 S13: -0.0286 REMARK 3 S21: 0.0997 S22: 0.0055 S23: 0.0236 REMARK 3 S31: -0.1176 S32: -0.0799 S33: -0.0875 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -0.4287 22.3496 -30.6209 REMARK 3 T TENSOR REMARK 3 T11: 0.2322 T22: -0.0713 REMARK 3 T33: -0.2612 T12: -0.0374 REMARK 3 T13: 0.0084 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 2.5042 L22: -0.4703 REMARK 3 L33: 2.2856 L12: -1.1492 REMARK 3 L13: -0.5706 L23: 0.7384 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: -0.0629 S13: 0.0582 REMARK 3 S21: 0.0051 S22: 0.0132 S23: 0.0351 REMARK 3 S31: -0.0918 S32: 0.0112 S33: -0.0143 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 16.3756 13.6306 -44.8862 REMARK 3 T TENSOR REMARK 3 T11: 0.1026 T22: 0.0586 REMARK 3 T33: -0.2916 T12: -0.0878 REMARK 3 T13: 0.0446 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 2.3047 L22: -0.6245 REMARK 3 L33: 2.7800 L12: -1.4531 REMARK 3 L13: -2.0453 L23: -0.4854 REMARK 3 S TENSOR REMARK 3 S11: 0.0487 S12: 0.0102 S13: -0.0056 REMARK 3 S21: -0.0613 S22: -0.0391 S23: -0.0607 REMARK 3 S31: -0.0728 S32: 0.0295 S33: -0.0096 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5M3G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 - 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.919762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21834 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.430 REMARK 200 RESOLUTION RANGE LOW (A) : 34.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 21.10 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 22.00 REMARK 200 R MERGE FOR SHELL (I) : 0.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5M38 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TAGL PGBD WAS MIXED WITH IE-DAP TO REMARK 280 GIVE FINAL CONCENTRATION OF PROTEIN WAS 0.4 MM (5 MG/ML) AND REMARK 280 CONCENTRATION OF LIGAND WAS 7 MM. MIXING THE COMPLEX WITH 0.1M REMARK 280 MES PH 5.5 - 6.5; 0.6-1M AM2SO4., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.83500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 88.83500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 88.83500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 0 REMARK 465 LYS A 1 REMARK 465 THR A 2 REMARK 465 GLN A 115 REMARK 465 ALA A 116 REMARK 465 ASP A 117 REMARK 465 ALA A 118 REMARK 465 CYS A 119 REMARK 465 ARG A 120 REMARK 465 LEU A 121 REMARK 465 PRO A 122 REMARK 465 ASP A 123 REMARK 465 VAL A 124 REMARK 465 SER A 125 REMARK 465 PRO A 126 REMARK 465 ALA A 127 REMARK 465 PRO A 128 REMARK 465 GLU A 129 REMARK 465 GLU A 130 REMARK 465 GLY A 131 REMARK 465 ALA A 132 REMARK 465 SER A 133 REMARK 465 GLU A 134 REMARK 465 ASN A 135 REMARK 465 ILE A 136 REMARK 465 THR A 137 REMARK 465 GLU A 138 REMARK 465 PRO B 0 REMARK 465 LYS B 1 REMARK 465 GLN B 115 REMARK 465 ALA B 116 REMARK 465 ASP B 117 REMARK 465 ALA B 118 REMARK 465 CYS B 119 REMARK 465 ARG B 120 REMARK 465 LEU B 121 REMARK 465 PRO B 122 REMARK 465 ASP B 123 REMARK 465 VAL B 124 REMARK 465 SER B 125 REMARK 465 PRO B 126 REMARK 465 ALA B 127 REMARK 465 PRO B 128 REMARK 465 GLU B 129 REMARK 465 GLU B 130 REMARK 465 GLY B 131 REMARK 465 ALA B 132 REMARK 465 SER B 133 REMARK 465 GLU B 134 REMARK 465 ASN B 135 REMARK 465 ILE B 136 REMARK 465 THR B 137 REMARK 465 GLU B 138 REMARK 465 PRO C 0 REMARK 465 LYS C 1 REMARK 465 GLN C 115 REMARK 465 ALA C 116 REMARK 465 ASP C 117 REMARK 465 ALA C 118 REMARK 465 CYS C 119 REMARK 465 ARG C 120 REMARK 465 LEU C 121 REMARK 465 PRO C 122 REMARK 465 ASP C 123 REMARK 465 VAL C 124 REMARK 465 SER C 125 REMARK 465 PRO C 126 REMARK 465 ALA C 127 REMARK 465 PRO C 128 REMARK 465 GLU C 129 REMARK 465 GLU C 130 REMARK 465 GLY C 131 REMARK 465 ALA C 132 REMARK 465 SER C 133 REMARK 465 GLU C 134 REMARK 465 ASN C 135 REMARK 465 ILE C 136 REMARK 465 THR C 137 REMARK 465 GLU C 138 REMARK 465 PRO D 0 REMARK 465 LYS D 1 REMARK 465 THR D 2 REMARK 465 VAL D 3 REMARK 465 GLN D 115 REMARK 465 ALA D 116 REMARK 465 ASP D 117 REMARK 465 ALA D 118 REMARK 465 CYS D 119 REMARK 465 ARG D 120 REMARK 465 LEU D 121 REMARK 465 PRO D 122 REMARK 465 ASP D 123 REMARK 465 VAL D 124 REMARK 465 SER D 125 REMARK 465 PRO D 126 REMARK 465 ALA D 127 REMARK 465 PRO D 128 REMARK 465 GLU D 129 REMARK 465 GLU D 130 REMARK 465 GLY D 131 REMARK 465 ALA D 132 REMARK 465 SER D 133 REMARK 465 GLU D 134 REMARK 465 ASN D 135 REMARK 465 ILE D 136 REMARK 465 THR D 137 REMARK 465 GLU D 138 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 96 CG OD1 ND2 REMARK 470 ASP A 97 CG OD1 OD2 REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 ARG A 104 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 4 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 36 NZ REMARK 470 ASP B 76 CG OD1 OD2 REMARK 470 THR C 2 OG1 CG2 REMARK 470 ARG C 4 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 15 CD CE NZ REMARK 470 LYS C 19 CE NZ REMARK 470 ARG C 55 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 62 CD CE NZ REMARK 470 ARG D 4 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 36 CE NZ REMARK 470 LEU D 54 CG CD1 CD2 REMARK 470 ARG D 55 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 96 CG OD1 ND2 REMARK 470 ASP D 97 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA C 99 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 13 115.03 -40.00 REMARK 500 LYS A 36 61.83 -116.11 REMARK 500 GLU A 100 -12.64 70.08 REMARK 500 ALA B 13 114.20 -36.11 REMARK 500 LYS B 36 62.80 -115.95 REMARK 500 ASP B 97 37.56 -83.83 REMARK 500 ALA C 13 113.37 -36.82 REMARK 500 LYS C 36 62.40 -116.47 REMARK 500 THR C 98 -0.38 69.52 REMARK 500 GLU C 100 79.58 -54.16 REMARK 500 ALA D 13 114.22 -35.63 REMARK 500 ASP D 97 95.26 -68.22 REMARK 500 THR D 98 120.85 -35.36 REMARK 500 ALA D 99 -139.27 -168.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 351 DISTANCE = 8.48 ANGSTROMS REMARK 525 HOH A 352 DISTANCE = 8.93 ANGSTROMS REMARK 525 HOH A 353 DISTANCE = 10.43 ANGSTROMS REMARK 525 HOH A 354 DISTANCE = 13.01 ANGSTROMS REMARK 525 HOH B 343 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B 344 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B 345 DISTANCE = 7.87 ANGSTROMS REMARK 525 HOH B 346 DISTANCE = 8.25 ANGSTROMS REMARK 525 HOH B 347 DISTANCE = 8.47 ANGSTROMS REMARK 525 HOH C 328 DISTANCE = 12.71 ANGSTROMS REMARK 525 HOH D 324 DISTANCE = 9.58 ANGSTROMS REMARK 525 HOH D 325 DISTANCE = 11.39 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue API A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 201 DBREF1 5M3G A 0 138 UNP A0A0P7P0J8_ECOLX DBREF2 5M3G A A0A0P7P0J8 438 576 DBREF1 5M3G B 0 138 UNP A0A0P7P0J8_ECOLX DBREF2 5M3G B A0A0P7P0J8 438 576 DBREF1 5M3G C 0 138 UNP A0A0P7P0J8_ECOLX DBREF2 5M3G C A0A0P7P0J8 438 576 DBREF1 5M3G D 0 138 UNP A0A0P7P0J8_ECOLX DBREF2 5M3G D A0A0P7P0J8 438 576 SEQRES 1 A 139 PRO LYS THR VAL ARG LEU ASN SER LEU ALA LEU PHE ASP SEQRES 2 A 139 ALA GLY LYS TRP THR LEU LYS PRO GLY ALA THR LYS TRP SEQRES 3 A 139 LEU VAL ASN ALA LEU VAL ASP ILE LYS ALA LYS ALA GLY SEQRES 4 A 139 TRP LEU ILE VAL VAL SER GLY HIS THR ASP ASN THR GLY SEQRES 5 A 139 ASP PRO LEU ARG ASN GLN ALA LEU SER LEU LYS ARG ALA SEQRES 6 A 139 GLU ALA VAL ARG ASP TRP MET ARG ASP THR GLY ASP ILE SEQRES 7 A 139 PRO GLN SER CYS PHE ALA VAL GLN GLY TYR GLY GLU SER SEQRES 8 A 139 ARG PRO VAL ALA PRO ASN ASP THR ALA GLU GLY ARG ALA SEQRES 9 A 139 ARG ASN ARG ARG VAL GLU ILE SER LEU VAL PRO GLN ALA SEQRES 10 A 139 ASP ALA CYS ARG LEU PRO ASP VAL SER PRO ALA PRO GLU SEQRES 11 A 139 GLU GLY ALA SER GLU ASN ILE THR GLU SEQRES 1 B 139 PRO LYS THR VAL ARG LEU ASN SER LEU ALA LEU PHE ASP SEQRES 2 B 139 ALA GLY LYS TRP THR LEU LYS PRO GLY ALA THR LYS TRP SEQRES 3 B 139 LEU VAL ASN ALA LEU VAL ASP ILE LYS ALA LYS ALA GLY SEQRES 4 B 139 TRP LEU ILE VAL VAL SER GLY HIS THR ASP ASN THR GLY SEQRES 5 B 139 ASP PRO LEU ARG ASN GLN ALA LEU SER LEU LYS ARG ALA SEQRES 6 B 139 GLU ALA VAL ARG ASP TRP MET ARG ASP THR GLY ASP ILE SEQRES 7 B 139 PRO GLN SER CYS PHE ALA VAL GLN GLY TYR GLY GLU SER SEQRES 8 B 139 ARG PRO VAL ALA PRO ASN ASP THR ALA GLU GLY ARG ALA SEQRES 9 B 139 ARG ASN ARG ARG VAL GLU ILE SER LEU VAL PRO GLN ALA SEQRES 10 B 139 ASP ALA CYS ARG LEU PRO ASP VAL SER PRO ALA PRO GLU SEQRES 11 B 139 GLU GLY ALA SER GLU ASN ILE THR GLU SEQRES 1 C 139 PRO LYS THR VAL ARG LEU ASN SER LEU ALA LEU PHE ASP SEQRES 2 C 139 ALA GLY LYS TRP THR LEU LYS PRO GLY ALA THR LYS TRP SEQRES 3 C 139 LEU VAL ASN ALA LEU VAL ASP ILE LYS ALA LYS ALA GLY SEQRES 4 C 139 TRP LEU ILE VAL VAL SER GLY HIS THR ASP ASN THR GLY SEQRES 5 C 139 ASP PRO LEU ARG ASN GLN ALA LEU SER LEU LYS ARG ALA SEQRES 6 C 139 GLU ALA VAL ARG ASP TRP MET ARG ASP THR GLY ASP ILE SEQRES 7 C 139 PRO GLN SER CYS PHE ALA VAL GLN GLY TYR GLY GLU SER SEQRES 8 C 139 ARG PRO VAL ALA PRO ASN ASP THR ALA GLU GLY ARG ALA SEQRES 9 C 139 ARG ASN ARG ARG VAL GLU ILE SER LEU VAL PRO GLN ALA SEQRES 10 C 139 ASP ALA CYS ARG LEU PRO ASP VAL SER PRO ALA PRO GLU SEQRES 11 C 139 GLU GLY ALA SER GLU ASN ILE THR GLU SEQRES 1 D 139 PRO LYS THR VAL ARG LEU ASN SER LEU ALA LEU PHE ASP SEQRES 2 D 139 ALA GLY LYS TRP THR LEU LYS PRO GLY ALA THR LYS TRP SEQRES 3 D 139 LEU VAL ASN ALA LEU VAL ASP ILE LYS ALA LYS ALA GLY SEQRES 4 D 139 TRP LEU ILE VAL VAL SER GLY HIS THR ASP ASN THR GLY SEQRES 5 D 139 ASP PRO LEU ARG ASN GLN ALA LEU SER LEU LYS ARG ALA SEQRES 6 D 139 GLU ALA VAL ARG ASP TRP MET ARG ASP THR GLY ASP ILE SEQRES 7 D 139 PRO GLN SER CYS PHE ALA VAL GLN GLY TYR GLY GLU SER SEQRES 8 D 139 ARG PRO VAL ALA PRO ASN ASP THR ALA GLU GLY ARG ALA SEQRES 9 D 139 ARG ASN ARG ARG VAL GLU ILE SER LEU VAL PRO GLN ALA SEQRES 10 D 139 ASP ALA CYS ARG LEU PRO ASP VAL SER PRO ALA PRO GLU SEQRES 11 D 139 GLU GLY ALA SER GLU ASN ILE THR GLU HET SO4 A 201 5 HET SO4 A 202 5 HET API A 203 13 HET SO4 B 201 5 HET SO4 C 201 5 HET SO4 D 201 5 HETNAM SO4 SULFATE ION HETNAM API 2,6-DIAMINOPIMELIC ACID FORMUL 5 SO4 5(O4 S 2-) FORMUL 7 API C7 H14 N2 O4 FORMUL 11 HOH *154(H2 O) HELIX 1 AA1 ALA A 22 LYS A 36 1 15 HELIX 2 AA2 ASP A 52 THR A 74 1 23 HELIX 3 AA3 PRO A 78 SER A 80 5 3 HELIX 4 AA4 GLU A 100 ARG A 106 1 7 HELIX 5 AA5 ALA B 22 LYS B 36 1 15 HELIX 6 AA6 ASP B 52 THR B 74 1 23 HELIX 7 AA7 PRO B 78 SER B 80 5 3 HELIX 8 AA8 GLY B 101 ARG B 106 1 6 HELIX 9 AA9 ALA C 22 LYS C 36 1 15 HELIX 10 AB1 ASP C 52 THR C 74 1 23 HELIX 11 AB2 PRO C 78 SER C 80 5 3 HELIX 12 AB3 GLY C 101 ARG C 106 1 6 HELIX 13 AB4 ALA D 22 ALA D 35 1 14 HELIX 14 AB5 ASP D 52 THR D 74 1 23 HELIX 15 AB6 PRO D 78 SER D 80 5 3 HELIX 16 AB7 GLY D 101 ARG D 106 1 6 SHEET 1 AA1 3 PHE A 82 GLY A 88 0 SHEET 2 AA1 3 LEU A 40 HIS A 46 1 N GLY A 45 O GLN A 85 SHEET 3 AA1 3 VAL A 108 VAL A 113 -1 O GLU A 109 N SER A 44 SHEET 1 AA2 4 VAL B 3 ARG B 4 0 SHEET 2 AA2 4 VAL B 108 VAL B 113 -1 O LEU B 112 N VAL B 3 SHEET 3 AA2 4 LEU B 40 GLY B 45 -1 N SER B 44 O GLU B 109 SHEET 4 AA2 4 PHE B 82 GLY B 86 1 O GLN B 85 N VAL B 43 SHEET 1 AA3 4 VAL C 3 ARG C 4 0 SHEET 2 AA3 4 VAL C 108 VAL C 113 -1 O LEU C 112 N VAL C 3 SHEET 3 AA3 4 LEU C 40 GLY C 45 -1 N SER C 44 O GLU C 109 SHEET 4 AA3 4 PHE C 82 GLY C 86 1 O GLN C 85 N VAL C 43 SHEET 1 AA4 3 PHE D 82 GLY D 88 0 SHEET 2 AA4 3 LEU D 40 HIS D 46 1 N GLY D 45 O GLN D 85 SHEET 3 AA4 3 VAL D 108 VAL D 113 -1 O GLU D 109 N SER D 44 CISPEP 1 GLU B 100 GLY B 101 0 5.48 SITE 1 AC1 6 LYS A 19 GLY A 21 ALA A 22 THR A 23 SITE 2 AC1 6 HOH A 309 HOH A 311 SITE 1 AC2 4 ARG A 72 PRO A 78 GLN A 79 HOH A 305 SITE 1 AC3 12 ALA A 13 GLY A 14 THR A 47 ASP A 48 SITE 2 AC3 12 THR A 50 ASN A 56 LEU A 59 ARG A 63 SITE 3 AC3 12 ARG A 106 GLY B 51 ASP B 52 ARG B 55 SITE 1 AC4 7 PRO B 20 GLY B 21 ALA B 22 THR B 23 SITE 2 AC4 7 HOH B 307 HOH B 317 THR D 74 SITE 1 AC5 6 THR A 74 PRO C 20 GLY C 21 THR C 23 SITE 2 AC5 6 HOH C 304 HOH C 306 SITE 1 AC6 4 PRO D 20 GLY D 21 ALA D 22 THR D 23 CRYST1 75.890 75.890 177.670 90.00 90.00 120.00 P 63 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013177 0.007608 0.000000 0.00000 SCALE2 0.000000 0.015215 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005628 0.00000