HEADER ANTITOXIN 14-OCT-16 5M3I TITLE MACRODOMAIN OF MYCOBACTERIUM TUBERCULOSIS DARG COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNASE III INHIBITOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: APPR-1-P PROCESSING DOMAIN PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A KEYWDS MACRODOMAIN, ADP-RIBOSYLATION, ADP-RIBOSE, ANTITOXIN, TOXIN-ANTITOXIN EXPDTA X-RAY DIFFRACTION AUTHOR A.ARIZA REVDAT 3 17-JAN-24 5M3I 1 REMARK REVDAT 2 28-DEC-16 5M3I 1 JRNL REVDAT 1 21-DEC-16 5M3I 0 JRNL AUTH G.JANKEVICIUS,A.ARIZA,M.AHEL,I.AHEL JRNL TITL THE TOXIN-ANTITOXIN SYSTEM DARTG CATALYZES REVERSIBLE JRNL TITL 2 ADP-RIBOSYLATION OF DNA. JRNL REF MOL. CELL V. 64 1109 2016 JRNL REFN ISSN 1097-4164 JRNL PMID 27939941 JRNL DOI 10.1016/J.MOLCEL.2016.11.014 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 30882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1564 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2223 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.3990 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.4270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4668 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.65000 REMARK 3 B22 (A**2) : -4.59000 REMARK 3 B33 (A**2) : 2.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.299 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.235 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.045 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4817 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4747 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6541 ; 1.498 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10925 ; 1.336 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 618 ; 5.809 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;37.484 ;23.930 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 824 ;13.910 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;17.843 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 735 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5443 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1057 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2442 ; 2.624 ; 4.495 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2441 ; 2.624 ; 4.494 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3049 ; 4.035 ; 6.734 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3050 ; 4.035 ; 6.735 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2375 ; 3.021 ; 4.866 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2375 ; 3.021 ; 4.866 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3486 ; 4.929 ; 7.121 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5104 ; 6.990 ;35.292 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5098 ; 6.990 ;35.260 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A -1 150 B -1 150 18668 0.05 0.05 REMARK 3 2 A -1 150 C -1 150 18594 0.06 0.05 REMARK 3 3 A -1 150 D -1 150 18688 0.05 0.05 REMARK 3 4 B -1 150 C -1 150 18578 0.06 0.05 REMARK 3 5 B -1 150 D -1 150 18620 0.06 0.05 REMARK 3 6 C -1 150 D -1 150 18664 0.05 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): -24.4540 -0.9600 14.8160 REMARK 3 T TENSOR REMARK 3 T11: 0.1478 T22: 0.1437 REMARK 3 T33: 0.1871 T12: -0.0159 REMARK 3 T13: -0.1104 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 2.7729 L22: 3.9040 REMARK 3 L33: 2.9340 L12: 1.3497 REMARK 3 L13: -2.0498 L23: -1.2889 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.0706 S13: 0.1369 REMARK 3 S21: -0.1104 S22: -0.1070 S23: -0.2271 REMARK 3 S31: 0.0908 S32: 0.0282 S33: 0.1076 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -1 B 150 REMARK 3 ORIGIN FOR THE GROUP (A): -57.3350 16.0140 14.9760 REMARK 3 T TENSOR REMARK 3 T11: 0.1277 T22: 0.1752 REMARK 3 T33: 0.2000 T12: -0.0068 REMARK 3 T13: -0.0809 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 2.1331 L22: 4.6834 REMARK 3 L33: 5.0222 L12: 0.2812 REMARK 3 L13: -1.9096 L23: -2.6754 REMARK 3 S TENSOR REMARK 3 S11: 0.0865 S12: 0.0646 S13: -0.1136 REMARK 3 S21: -0.1378 S22: -0.5753 S23: -0.5793 REMARK 3 S31: -0.0331 S32: -0.0421 S33: 0.4888 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -1 C 150 REMARK 3 ORIGIN FOR THE GROUP (A): -42.3330 -1.5110 43.8650 REMARK 3 T TENSOR REMARK 3 T11: 0.3510 T22: 0.0933 REMARK 3 T33: 0.1366 T12: -0.0341 REMARK 3 T13: 0.0023 T23: -0.0380 REMARK 3 L TENSOR REMARK 3 L11: 1.5217 L22: 2.9793 REMARK 3 L33: 3.2368 L12: -0.5806 REMARK 3 L13: -1.5957 L23: 2.1452 REMARK 3 S TENSOR REMARK 3 S11: -0.0765 S12: 0.2548 S13: -0.1941 REMARK 3 S21: 0.4039 S22: -0.0929 S23: 0.0922 REMARK 3 S31: -0.1087 S32: -0.1394 S33: 0.1694 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D -1 D 150 REMARK 3 ORIGIN FOR THE GROUP (A): -61.3870 -22.3860 14.8120 REMARK 3 T TENSOR REMARK 3 T11: 0.3565 T22: 0.1315 REMARK 3 T33: 0.1076 T12: 0.1448 REMARK 3 T13: -0.0622 T23: 0.0435 REMARK 3 L TENSOR REMARK 3 L11: 2.0509 L22: 3.3349 REMARK 3 L33: 4.7929 L12: 1.2299 REMARK 3 L13: -2.7882 L23: -2.4851 REMARK 3 S TENSOR REMARK 3 S11: -0.2517 S12: -0.1660 S13: -0.2377 REMARK 3 S21: -0.2639 S22: -0.1301 S23: -0.1415 REMARK 3 S31: -0.0990 S32: -0.0199 S33: 0.3818 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5M3I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32503 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 59.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : 2.30200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2DX6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM AMMONIUM CHLORIDE AND 20% (W/V) REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.42000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.06000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.72500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.06000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.42000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.72500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 GLY A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A 151 REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 ARG A 154 REMARK 465 ALA A 155 REMARK 465 MET B -9 REMARK 465 GLY B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 GLY B 151 REMARK 465 GLY B 152 REMARK 465 SER B 153 REMARK 465 ARG B 154 REMARK 465 ALA B 155 REMARK 465 MET C -9 REMARK 465 GLY C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C 151 REMARK 465 GLY C 152 REMARK 465 SER C 153 REMARK 465 ARG C 154 REMARK 465 ALA C 155 REMARK 465 MET D -9 REMARK 465 GLY D -8 REMARK 465 HIS D -7 REMARK 465 HIS D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 GLY D 151 REMARK 465 GLY D 152 REMARK 465 SER D 153 REMARK 465 ARG D 154 REMARK 465 ALA D 155 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP B 64 OE2 GLU C 54 2354 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 81 -89.88 -82.78 REMARK 500 LYS B 81 -89.09 -82.55 REMARK 500 LYS C 81 -91.23 -82.82 REMARK 500 LYS D 81 -91.32 -81.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 201 DBREF1 5M3I A 1 155 UNP A0A045JW26_MYCTX DBREF2 5M3I A A0A045JW26 1 155 DBREF1 5M3I B 1 155 UNP A0A045JW26_MYCTX DBREF2 5M3I B A0A045JW26 1 155 DBREF1 5M3I C 1 155 UNP A0A045JW26_MYCTX DBREF2 5M3I C A0A045JW26 1 155 DBREF1 5M3I D 1 155 UNP A0A045JW26_MYCTX DBREF2 5M3I D A0A045JW26 1 155 SEQADV 5M3I MET A -9 UNP A0A045JW2 INITIATING METHIONINE SEQADV 5M3I GLY A -8 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS A -7 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS A -6 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS A -5 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS A -4 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS A -3 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS A -2 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I GLY A -1 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I GLY A 0 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I MET B -9 UNP A0A045JW2 INITIATING METHIONINE SEQADV 5M3I GLY B -8 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS B -7 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS B -6 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS B -5 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS B -4 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS B -3 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS B -2 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I GLY B -1 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I GLY B 0 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I MET C -9 UNP A0A045JW2 INITIATING METHIONINE SEQADV 5M3I GLY C -8 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS C -7 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS C -6 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS C -5 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS C -4 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS C -3 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS C -2 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I GLY C -1 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I GLY C 0 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I MET D -9 UNP A0A045JW2 INITIATING METHIONINE SEQADV 5M3I GLY D -8 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS D -7 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS D -6 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS D -5 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS D -4 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS D -3 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I HIS D -2 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I GLY D -1 UNP A0A045JW2 EXPRESSION TAG SEQADV 5M3I GLY D 0 UNP A0A045JW2 EXPRESSION TAG SEQRES 1 A 165 MET GLY HIS HIS HIS HIS HIS HIS GLY GLY MET ILE THR SEQRES 2 A 165 TYR GLY SER GLY ASP LEU LEU ARG ALA ASP THR GLU ALA SEQRES 3 A 165 LEU VAL ASN THR VAL ASN CYS VAL GLY VAL MET GLY LYS SEQRES 4 A 165 GLY ILE ALA LEU GLN PHE LYS ARG ARG TYR PRO GLU MET SEQRES 5 A 165 PHE THR ALA TYR GLU LYS ALA CYS LYS ARG GLY GLU VAL SEQRES 6 A 165 THR ILE GLY LYS MET PHE VAL VAL ASP THR GLY GLN LEU SEQRES 7 A 165 ASP GLY PRO LYS HIS ILE ILE ASN PHE PRO THR LYS LYS SEQRES 8 A 165 HIS TRP ARG ALA PRO SER LYS LEU ALA TYR ILE ASP ALA SEQRES 9 A 165 GLY LEU ILE ASP LEU ILE ARG VAL ILE ARG GLU LEU ASN SEQRES 10 A 165 ILE ALA SER VAL ALA VAL PRO PRO LEU GLY VAL GLY ASN SEQRES 11 A 165 GLY GLY LEU ASP TRP GLU ASP VAL GLU GLN ARG LEU VAL SEQRES 12 A 165 SER ALA PHE GLN GLN LEU PRO ASP VAL ASP ALA VAL ILE SEQRES 13 A 165 TYR PRO PRO SER GLY GLY SER ARG ALA SEQRES 1 B 165 MET GLY HIS HIS HIS HIS HIS HIS GLY GLY MET ILE THR SEQRES 2 B 165 TYR GLY SER GLY ASP LEU LEU ARG ALA ASP THR GLU ALA SEQRES 3 B 165 LEU VAL ASN THR VAL ASN CYS VAL GLY VAL MET GLY LYS SEQRES 4 B 165 GLY ILE ALA LEU GLN PHE LYS ARG ARG TYR PRO GLU MET SEQRES 5 B 165 PHE THR ALA TYR GLU LYS ALA CYS LYS ARG GLY GLU VAL SEQRES 6 B 165 THR ILE GLY LYS MET PHE VAL VAL ASP THR GLY GLN LEU SEQRES 7 B 165 ASP GLY PRO LYS HIS ILE ILE ASN PHE PRO THR LYS LYS SEQRES 8 B 165 HIS TRP ARG ALA PRO SER LYS LEU ALA TYR ILE ASP ALA SEQRES 9 B 165 GLY LEU ILE ASP LEU ILE ARG VAL ILE ARG GLU LEU ASN SEQRES 10 B 165 ILE ALA SER VAL ALA VAL PRO PRO LEU GLY VAL GLY ASN SEQRES 11 B 165 GLY GLY LEU ASP TRP GLU ASP VAL GLU GLN ARG LEU VAL SEQRES 12 B 165 SER ALA PHE GLN GLN LEU PRO ASP VAL ASP ALA VAL ILE SEQRES 13 B 165 TYR PRO PRO SER GLY GLY SER ARG ALA SEQRES 1 C 165 MET GLY HIS HIS HIS HIS HIS HIS GLY GLY MET ILE THR SEQRES 2 C 165 TYR GLY SER GLY ASP LEU LEU ARG ALA ASP THR GLU ALA SEQRES 3 C 165 LEU VAL ASN THR VAL ASN CYS VAL GLY VAL MET GLY LYS SEQRES 4 C 165 GLY ILE ALA LEU GLN PHE LYS ARG ARG TYR PRO GLU MET SEQRES 5 C 165 PHE THR ALA TYR GLU LYS ALA CYS LYS ARG GLY GLU VAL SEQRES 6 C 165 THR ILE GLY LYS MET PHE VAL VAL ASP THR GLY GLN LEU SEQRES 7 C 165 ASP GLY PRO LYS HIS ILE ILE ASN PHE PRO THR LYS LYS SEQRES 8 C 165 HIS TRP ARG ALA PRO SER LYS LEU ALA TYR ILE ASP ALA SEQRES 9 C 165 GLY LEU ILE ASP LEU ILE ARG VAL ILE ARG GLU LEU ASN SEQRES 10 C 165 ILE ALA SER VAL ALA VAL PRO PRO LEU GLY VAL GLY ASN SEQRES 11 C 165 GLY GLY LEU ASP TRP GLU ASP VAL GLU GLN ARG LEU VAL SEQRES 12 C 165 SER ALA PHE GLN GLN LEU PRO ASP VAL ASP ALA VAL ILE SEQRES 13 C 165 TYR PRO PRO SER GLY GLY SER ARG ALA SEQRES 1 D 165 MET GLY HIS HIS HIS HIS HIS HIS GLY GLY MET ILE THR SEQRES 2 D 165 TYR GLY SER GLY ASP LEU LEU ARG ALA ASP THR GLU ALA SEQRES 3 D 165 LEU VAL ASN THR VAL ASN CYS VAL GLY VAL MET GLY LYS SEQRES 4 D 165 GLY ILE ALA LEU GLN PHE LYS ARG ARG TYR PRO GLU MET SEQRES 5 D 165 PHE THR ALA TYR GLU LYS ALA CYS LYS ARG GLY GLU VAL SEQRES 6 D 165 THR ILE GLY LYS MET PHE VAL VAL ASP THR GLY GLN LEU SEQRES 7 D 165 ASP GLY PRO LYS HIS ILE ILE ASN PHE PRO THR LYS LYS SEQRES 8 D 165 HIS TRP ARG ALA PRO SER LYS LEU ALA TYR ILE ASP ALA SEQRES 9 D 165 GLY LEU ILE ASP LEU ILE ARG VAL ILE ARG GLU LEU ASN SEQRES 10 D 165 ILE ALA SER VAL ALA VAL PRO PRO LEU GLY VAL GLY ASN SEQRES 11 D 165 GLY GLY LEU ASP TRP GLU ASP VAL GLU GLN ARG LEU VAL SEQRES 12 D 165 SER ALA PHE GLN GLN LEU PRO ASP VAL ASP ALA VAL ILE SEQRES 13 D 165 TYR PRO PRO SER GLY GLY SER ARG ALA HET CL A 201 1 HET CL B 201 1 HET CL C 201 1 HETNAM CL CHLORIDE ION FORMUL 5 CL 3(CL 1-) FORMUL 8 HOH *74(H2 O) HELIX 1 AA1 ASP A 8 ALA A 12 5 5 HELIX 2 AA2 LYS A 29 TYR A 39 1 11 HELIX 3 AA3 TYR A 39 ARG A 52 1 14 HELIX 4 AA4 LYS A 88 LEU A 106 1 19 HELIX 5 AA5 ASP A 124 GLN A 138 1 15 HELIX 6 AA6 ASP B 8 ALA B 12 5 5 HELIX 7 AA7 LYS B 29 TYR B 39 1 11 HELIX 8 AA8 TYR B 39 ARG B 52 1 14 HELIX 9 AA9 LYS B 88 LEU B 106 1 19 HELIX 10 AB1 ASP B 124 GLN B 138 1 15 HELIX 11 AB2 ASP C 8 ALA C 12 5 5 HELIX 12 AB3 LYS C 29 TYR C 39 1 11 HELIX 13 AB4 TYR C 39 ARG C 52 1 14 HELIX 14 AB5 LYS C 88 LEU C 106 1 19 HELIX 15 AB6 ASP C 124 GLN C 137 1 14 HELIX 16 AB7 ASP D 8 ALA D 12 5 5 HELIX 17 AB8 LYS D 29 TYR D 39 1 11 HELIX 18 AB9 TYR D 39 ARG D 52 1 14 HELIX 19 AC1 LYS D 88 LEU D 106 1 19 HELIX 20 AC2 ASP D 124 GLN D 138 1 15 SHEET 1 AA1 6 ILE A 2 TYR A 4 0 SHEET 2 AA1 6 ASP A 143 ILE A 146 1 O ALA A 144 N THR A 3 SHEET 3 AA1 6 SER A 110 VAL A 113 1 N VAL A 113 O VAL A 145 SHEET 4 AA1 6 ALA A 16 VAL A 21 1 N VAL A 18 O ALA A 112 SHEET 5 AA1 6 HIS A 73 PRO A 78 1 O PHE A 77 N ASN A 19 SHEET 6 AA1 6 PHE A 61 ASP A 64 -1 N VAL A 63 O ILE A 74 SHEET 1 AA2 6 ILE B 2 TYR B 4 0 SHEET 2 AA2 6 ASP B 143 ILE B 146 1 O ALA B 144 N THR B 3 SHEET 3 AA2 6 SER B 110 VAL B 113 1 N VAL B 113 O VAL B 145 SHEET 4 AA2 6 ALA B 16 VAL B 21 1 N VAL B 18 O ALA B 112 SHEET 5 AA2 6 HIS B 73 PRO B 78 1 O PHE B 77 N ASN B 19 SHEET 6 AA2 6 PHE B 61 ASP B 64 -1 N VAL B 63 O ILE B 74 SHEET 1 AA3 6 ILE C 2 TYR C 4 0 SHEET 2 AA3 6 ASP C 143 ILE C 146 1 O ALA C 144 N THR C 3 SHEET 3 AA3 6 SER C 110 VAL C 113 1 N VAL C 113 O VAL C 145 SHEET 4 AA3 6 ALA C 16 VAL C 21 1 N VAL C 18 O ALA C 112 SHEET 5 AA3 6 HIS C 73 PRO C 78 1 O PHE C 77 N ASN C 19 SHEET 6 AA3 6 PHE C 61 ASP C 64 -1 N VAL C 63 O ILE C 74 SHEET 1 AA4 6 ILE D 2 TYR D 4 0 SHEET 2 AA4 6 ASP D 143 ILE D 146 1 O ILE D 146 N THR D 3 SHEET 3 AA4 6 SER D 110 VAL D 113 1 N VAL D 113 O VAL D 145 SHEET 4 AA4 6 ALA D 16 VAL D 21 1 N VAL D 18 O ALA D 112 SHEET 5 AA4 6 HIS D 73 PRO D 78 1 O PHE D 77 N ASN D 19 SHEET 6 AA4 6 PHE D 61 ASP D 64 -1 N VAL D 63 O ILE D 74 SITE 1 AC1 3 LEU A 139 ASP A 141 HOH A 325 SITE 1 AC2 3 LEU B 139 PRO B 140 ASP B 141 SITE 1 AC3 2 LEU C 139 ASP C 141 CRYST1 68.840 75.450 116.120 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014526 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013254 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008612 0.00000