HEADER IMMUNE SYSTEM 17-OCT-16 5M3V TITLE BEAT FC COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG GAMMA-1 CHAIN C REGION,IG GAMMA-3 CHAIN C REGION; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HDC,HEAVY CHAIN DISEASE PROTEIN, BEAT FC (A); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: IG GAMMA-1 CHAIN C REGION; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: BEAT FC (B); COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGHG1, IGHG3; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: IGHG1; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ANTIBODY TCR BISPECIFIC INTERFACE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.SKEGRO,C.STUTZ,F.BOURQUIN,S.BLEIN REVDAT 4 17-JAN-24 5M3V 1 HETSYN LINK REVDAT 3 29-JUL-20 5M3V 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 21-JUN-17 5M3V 1 JRNL REVDAT 1 10-MAY-17 5M3V 0 JRNL AUTH D.SKEGRO,C.STUTZ,R.OLLIER,E.SVENSSON,P.WASSMANN,F.BOURQUIN, JRNL AUTH 2 T.MONNEY,S.GN,S.BLEIN JRNL TITL IMMUNOGLOBULIN DOMAIN INTERFACE EXCHANGE AS A PLATFORM JRNL TITL 2 TECHNOLOGY FOR THE GENERATION OF FC HETERODIMERS AND JRNL TITL 3 BISPECIFIC ANTIBODIES. JRNL REF J. BIOL. CHEM. V. 292 9745 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28450393 JRNL DOI 10.1074/JBC.M117.782433 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 35360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1883 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2533 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3780 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3078 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 220 REMARK 3 SOLVENT ATOMS : 493 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70000 REMARK 3 B22 (A**2) : -0.32000 REMARK 3 B33 (A**2) : -0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.188 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.227 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3434 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3158 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4694 ; 1.694 ; 2.035 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7363 ; 0.964 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 390 ;10.392 ; 5.064 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;36.835 ;24.722 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 537 ;16.083 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;19.328 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 565 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3603 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 710 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1541 ; 1.523 ; 2.390 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1540 ; 1.523 ; 2.390 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1920 ; 2.461 ; 3.570 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1921 ; 2.461 ; 3.571 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1893 ; 1.937 ; 2.968 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1893 ; 1.937 ; 2.968 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2772 ; 3.023 ; 4.359 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3921 ;16.469 ;35.924 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3754 ;16.396 ;33.606 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 237 A 1011 REMARK 3 ORIGIN FOR THE GROUP (A): 35.7490 5.5710 -24.3670 REMARK 3 T TENSOR REMARK 3 T11: 0.0062 T22: 0.0968 REMARK 3 T33: 0.5010 T12: -0.0180 REMARK 3 T13: -0.0260 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 0.9204 L22: 0.9999 REMARK 3 L33: 2.5100 L12: 0.5498 REMARK 3 L13: 0.2656 L23: 0.2621 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: -0.1081 S13: 0.0384 REMARK 3 S21: -0.0199 S22: 0.1485 S23: 0.2087 REMARK 3 S31: 0.1061 S32: -0.1953 S33: -0.1629 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 240 B 1011 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6830 -16.4020 -29.2770 REMARK 3 T TENSOR REMARK 3 T11: 0.0664 T22: 0.1118 REMARK 3 T33: 0.4391 T12: 0.0534 REMARK 3 T13: -0.0422 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 3.5299 L22: 3.0454 REMARK 3 L33: 3.9268 L12: -0.0638 REMARK 3 L13: -2.1998 L23: 1.5970 REMARK 3 S TENSOR REMARK 3 S11: -0.1974 S12: -0.4422 S13: -0.1784 REMARK 3 S21: 0.3406 S22: 0.3825 S23: -0.3814 REMARK 3 S31: 0.1219 S32: 0.6005 S33: -0.1851 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5M3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 93.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35360 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.76500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 1H3T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS GROWN BY VAPOR DIFFUSION BY REMARK 280 MIXING 10.2 MG/ML PROTEIN IN 10 MM TRIS-HCL PH8.0, 100 MM NACL, REMARK 280 1 MM EDTA, EQUALLY WITH 27.00 %(W/V) PEG 1500, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.89000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.76500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.82500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.76500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.89000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.82500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 221 REMARK 465 LYS A 222 REMARK 465 THR A 223 REMARK 465 HIS A 224 REMARK 465 THR A 225 REMARK 465 CYS A 226 REMARK 465 PRO A 227 REMARK 465 PRO A 228 REMARK 465 CYS A 229 REMARK 465 PRO A 230 REMARK 465 ALA A 231 REMARK 465 PRO A 232 REMARK 465 GLU A 233 REMARK 465 LEU A 234 REMARK 465 LEU A 235 REMARK 465 GLY A 236 REMARK 465 PRO A 445 REMARK 465 GLY A 446 REMARK 465 LYS A 447 REMARK 465 HIS A 448 REMARK 465 HIS A 449 REMARK 465 HIS A 450 REMARK 465 HIS A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 ASP B 221 REMARK 465 LYS B 222 REMARK 465 THR B 223 REMARK 465 HIS B 224 REMARK 465 THR B 225 REMARK 465 CYS B 226 REMARK 465 PRO B 227 REMARK 465 PRO B 228 REMARK 465 CYS B 229 REMARK 465 PRO B 230 REMARK 465 ALA B 231 REMARK 465 PRO B 232 REMARK 465 GLU B 233 REMARK 465 LEU B 234 REMARK 465 LEU B 235 REMARK 465 GLY B 236 REMARK 465 GLY B 237 REMARK 465 PRO B 238 REMARK 465 SER B 239 REMARK 465 VAL B 264 REMARK 465 ASP B 265 REMARK 465 VAL B 266 REMARK 465 SER B 267 REMARK 465 HIS B 268 REMARK 465 GLU B 269 REMARK 465 ASP B 270 REMARK 465 PRO B 271 REMARK 465 GLU B 272 REMARK 465 VAL B 273 REMARK 465 LYS B 274 REMARK 465 GLN B 295 REMARK 465 TYR B 296 REMARK 465 ASN B 297 REMARK 465 SER B 298 REMARK 465 THR B 299 REMARK 465 TYR B 300 REMARK 465 ARG B 301 REMARK 465 LYS B 322 REMARK 465 VAL B 323 REMARK 465 SER B 324 REMARK 465 ASN B 325 REMARK 465 LYS B 326 REMARK 465 ALA B 327 REMARK 465 LEU B 328 REMARK 465 PRO B 329 REMARK 465 ALA B 330 REMARK 465 PRO B 331 REMARK 465 ILE B 332 REMARK 465 PRO B 445 REMARK 465 GLY B 446 REMARK 465 LYS B 447 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 260 O2 GAL D 6 1.49 REMARK 500 O6 BMA D 3 O5 MAN D 4 1.98 REMARK 500 O HOH A 1102 O HOH A 1107 2.00 REMARK 500 O6 BMA C 3 O5 MAN C 4 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1140 O HOH B 1193 3654 2.06 REMARK 500 O HOH A 1112 O HOH B 1133 3654 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 359 36.23 -94.35 REMARK 500 PRO A 374 -173.81 -65.56 REMARK 500 ASN B 390 58.34 73.18 REMARK 500 ASN B 390 57.90 73.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1384 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1385 DISTANCE = 7.53 ANGSTROMS REMARK 525 HOH B1306 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B1307 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH B1308 DISTANCE = 6.78 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG D 1 DBREF 5M3V A 221 340 UNP P01857 IGHG1_HUMAN 104 223 DBREF 5M3V A 341 447 UNP P01860 IGHG3_HUMAN 271 377 DBREF 5M3V B 221 447 UNP P01857 IGHG1_HUMAN 104 330 SEQADV 5M3V LYS A 364 UNP P01860 SER 294 ENGINEERED MUTATION SEQADV 5M3V VAL A 366 UNP P01860 THR 296 ENGINEERED MUTATION SEQADV 5M3V THR A 370 UNP P01860 LYS 300 ENGINEERED MUTATION SEQADV 5M3V TYR A 392 UNP P01860 ASN 322 ENGINEERED MUTATION SEQADV 5M3V SER A 405 UNP P01860 PHE 335 ENGINEERED MUTATION SEQADV 5M3V VAL A 407 UNP P01860 TYR 337 ENGINEERED MUTATION SEQADV 5M3V TRP A 409 UNP P01860 LYS 339 ENGINEERED MUTATION SEQADV 5M3V ASN A 411 UNP P01860 THR 341 ENGINEERED MUTATION SEQADV 5M3V HIS A 448 UNP P01860 EXPRESSION TAG SEQADV 5M3V HIS A 449 UNP P01860 EXPRESSION TAG SEQADV 5M3V HIS A 450 UNP P01860 EXPRESSION TAG SEQADV 5M3V HIS A 451 UNP P01860 EXPRESSION TAG SEQADV 5M3V HIS A 452 UNP P01860 EXPRESSION TAG SEQADV 5M3V HIS A 453 UNP P01860 EXPRESSION TAG SEQADV 5M3V GLU B 347 UNP P01857 GLN 230 ENGINEERED MUTATION SEQADV 5M3V ALA B 349 UNP P01857 TYR 232 ENGINEERED MUTATION SEQADV 5M3V PHE B 351 UNP P01857 LEU 234 ENGINEERED MUTATION SEQADV 5M3V THR B 364 UNP P01857 SER 247 ENGINEERED MUTATION SEQADV 5M3V VAL B 366 UNP P01857 THR 249 ENGINEERED MUTATION SEQADV 5M3V THR B 370 UNP P01857 LYS 253 ENGINEERED MUTATION SEQADV 5M3V ASP B 394 UNP P01857 THR 277 ENGINEERED MUTATION SEQADV 5M3V LEU B 397 UNP P01857 VAL 280 ENGINEERED MUTATION SEQADV 5M3V GLU B 399 UNP P01857 ASP 282 ENGINEERED MUTATION SEQADV 5M3V ALA B 405 UNP P01857 PHE 288 ENGINEERED MUTATION SEQADV 5M3V SER B 407 UNP P01857 TYR 290 ENGINEERED MUTATION SEQADV 5M3V ARG B 409 UNP P01857 LYS 292 ENGINEERED MUTATION SEQADV 5M3V ARG B 411 UNP P01857 THR 294 ENGINEERED MUTATION SEQRES 1 A 233 ASP LYS THR HIS THR CYS PRO PRO CYS PRO ALA PRO GLU SEQRES 2 A 233 LEU LEU GLY GLY PRO SER VAL PHE LEU PHE PRO PRO LYS SEQRES 3 A 233 PRO MLY ASP THR LEU MET ILE SER ARG THR PRO GLU VAL SEQRES 4 A 233 THR CYS VAL VAL VAL ASP VAL SER HIS GLU ASP PRO GLU SEQRES 5 A 233 VAL MLZ PHE ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS SEQRES 6 A 233 ASN ALA LYS THR LYS PRO ARG GLU GLU GLN TYR ASN SER SEQRES 7 A 233 THR TYR ARG VAL VAL SER VAL LEU THR VAL LEU HIS GLN SEQRES 8 A 233 ASP TRP LEU ASN GLY LYS GLU TYR LYS CYS LYS VAL SER SEQRES 9 A 233 ASN LYS ALA LEU PRO ALA PRO ILE GLU LYS THR ILE SER SEQRES 10 A 233 LYS ALA LYS GLY GLN PRO ARG GLU PRO GLN VAL TYR THR SEQRES 11 A 233 LEU PRO PRO SER ARG GLU GLU MET THR LYS ASN GLN VAL SEQRES 12 A 233 LYS LEU VAL CYS LEU VAL THR GLY PHE TYR PRO SER ASP SEQRES 13 A 233 ILE ALA VAL GLU TRP GLU SER SER GLY GLN PRO GLU ASN SEQRES 14 A 233 ASN TYR TYR THR THR PRO PRO MET LEU ASP SER ASP GLY SEQRES 15 A 233 SER PHE SER LEU VAL SER TRP LEU ASN VAL ASP LYS SER SEQRES 16 A 233 ARG TRP GLN GLN GLY ASN ILE PHE SER CYS SER VAL MET SEQRES 17 A 233 HIS GLU ALA LEU HIS ASN ARG PHE THR GLN LYS SER LEU SEQRES 18 A 233 SER LEU SER PRO GLY LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 227 ASP LYS THR HIS THR CYS PRO PRO CYS PRO ALA PRO GLU SEQRES 2 B 227 LEU LEU GLY GLY PRO SER VAL PHE LEU PHE PRO PRO LYS SEQRES 3 B 227 PRO MLY ASP THR LEU MET ILE SER ARG THR PRO GLU VAL SEQRES 4 B 227 THR CYS VAL VAL VAL ASP VAL SER HIS GLU ASP PRO GLU SEQRES 5 B 227 VAL LYS PHE ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS SEQRES 6 B 227 ASN ALA LYS THR LYS PRO ARG GLU GLU GLN TYR ASN SER SEQRES 7 B 227 THR TYR ARG VAL VAL SER VAL LEU THR VAL LEU HIS GLN SEQRES 8 B 227 ASP TRP LEU ASN GLY LYS GLU TYR LYS CYS LYS VAL SER SEQRES 9 B 227 ASN LYS ALA LEU PRO ALA PRO ILE GLU LYS THR ILE SER SEQRES 10 B 227 LYS ALA LYS GLY GLN PRO ARG GLU PRO GLU VAL ALA THR SEQRES 11 B 227 PHE PRO PRO SER ARG ASP GLU LEU THR LYS ASN GLN VAL SEQRES 12 B 227 THR LEU VAL CYS LEU VAL THR GLY PHE TYR PRO SER ASP SEQRES 13 B 227 ILE ALA VAL GLU TRP GLU SER ASN GLY GLN PRO GLU ASN SEQRES 14 B 227 ASN TYR LYS THR ASP PRO PRO LEU LEU GLU SER ASP GLY SEQRES 15 B 227 SER PHE ALA LEU SER SER ARG LEU ARG VAL ASP LYS SER SEQRES 16 B 227 ARG TRP GLN GLN GLY ASN VAL PHE SER CYS SER VAL MET SEQRES 17 B 227 HIS GLU ALA LEU HIS ASN HIS TYR THR GLN LYS SER LEU SEQRES 18 B 227 SER LEU SER PRO GLY LYS MODRES 5M3V MLY A 248 LYS MODIFIED RESIDUE MODRES 5M3V MLZ A 274 LYS MODIFIED RESIDUE MODRES 5M3V MLY B 248 LYS MODIFIED RESIDUE HET MLY A 248 11 HET MLZ A 274 10 HET MLY B 248 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG C 5 14 HET GAL C 6 11 HET MAN C 7 11 HET NAG C 8 14 HET FUL C 9 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG D 5 14 HET GAL D 6 11 HET MAN D 7 11 HET NAG D 8 14 HET FUL D 9 10 HETNAM MLY N-DIMETHYL-LYSINE HETNAM MLZ N-METHYL-LYSINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE FORMUL 1 MLY 2(C8 H18 N2 O2) FORMUL 1 MLZ C7 H16 N2 O2 FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 3 FUL 2(C6 H12 O5) FORMUL 5 HOH *493(H2 O) HELIX 1 AA1 LYS A 246 MET A 252 1 7 HELIX 2 AA2 LEU A 309 ASN A 315 1 7 HELIX 3 AA3 GLU A 356 LYS A 360 5 5 HELIX 4 AA4 LYS A 414 GLN A 419 1 6 HELIX 5 AA5 LEU A 432 ASN A 434 5 3 HELIX 6 AA6 LYS B 246 MET B 252 1 7 HELIX 7 AA7 LEU B 309 ASN B 315 1 7 HELIX 8 AA8 ASP B 356 LYS B 360 5 5 HELIX 9 AA9 LYS B 414 GLN B 419 1 6 HELIX 10 AB1 LEU B 432 ASN B 434 5 3 SHEET 1 AA1 4 SER A 239 PHE A 243 0 SHEET 2 AA1 4 GLU A 258 VAL A 266 -1 O VAL A 262 N PHE A 241 SHEET 3 AA1 4 TYR A 300 THR A 307 -1 O LEU A 306 N VAL A 259 SHEET 4 AA1 4 LYS A 288 THR A 289 -1 N LYS A 288 O VAL A 305 SHEET 1 AA2 4 SER A 239 PHE A 243 0 SHEET 2 AA2 4 GLU A 258 VAL A 266 -1 O VAL A 262 N PHE A 241 SHEET 3 AA2 4 TYR A 300 THR A 307 -1 O LEU A 306 N VAL A 259 SHEET 4 AA2 4 GLU A 293 GLU A 294 -1 N GLU A 293 O ARG A 301 SHEET 1 AA3 4 VAL A 282 VAL A 284 0 SHEET 2 AA3 4 MLZ A 274 VAL A 279 -1 N VAL A 279 O VAL A 282 SHEET 3 AA3 4 TYR A 319 SER A 324 -1 O LYS A 322 N ASN A 276 SHEET 4 AA3 4 ILE A 332 ILE A 336 -1 O ILE A 336 N TYR A 319 SHEET 1 AA4 4 GLN A 347 LEU A 351 0 SHEET 2 AA4 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA4 4 PHE A 404 ASP A 413 -1 O PHE A 404 N PHE A 372 SHEET 4 AA4 4 TYR A 391 THR A 393 -1 N TYR A 392 O TRP A 409 SHEET 1 AA5 4 GLN A 347 LEU A 351 0 SHEET 2 AA5 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA5 4 PHE A 404 ASP A 413 -1 O PHE A 404 N PHE A 372 SHEET 4 AA5 4 MET A 397 LEU A 398 -1 N MET A 397 O SER A 405 SHEET 1 AA6 4 GLN A 386 GLU A 388 0 SHEET 2 AA6 4 ALA A 378 SER A 383 -1 N SER A 383 O GLN A 386 SHEET 3 AA6 4 PHE A 423 MET A 428 -1 O SER A 426 N GLU A 380 SHEET 4 AA6 4 PHE A 436 LEU A 441 -1 O LYS A 439 N CYS A 425 SHEET 1 AA7 4 PHE B 241 PHE B 243 0 SHEET 2 AA7 4 GLU B 258 VAL B 262 -1 O THR B 260 N PHE B 243 SHEET 3 AA7 4 VAL B 303 THR B 307 -1 O LEU B 306 N VAL B 259 SHEET 4 AA7 4 LYS B 288 LYS B 290 -1 N LYS B 288 O VAL B 305 SHEET 1 AA8 4 VAL B 282 GLU B 283 0 SHEET 2 AA8 4 TYR B 278 VAL B 279 -1 N VAL B 279 O VAL B 282 SHEET 3 AA8 4 TYR B 319 LYS B 320 -1 O LYS B 320 N TYR B 278 SHEET 4 AA8 4 THR B 335 ILE B 336 -1 O ILE B 336 N TYR B 319 SHEET 1 AA9 4 GLU B 347 PHE B 351 0 SHEET 2 AA9 4 GLN B 362 PHE B 372 -1 O LEU B 368 N ALA B 349 SHEET 3 AA9 4 PHE B 404 ASP B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 AA9 4 TYR B 391 THR B 393 -1 N LYS B 392 O ARG B 409 SHEET 1 AB1 4 GLU B 347 PHE B 351 0 SHEET 2 AB1 4 GLN B 362 PHE B 372 -1 O LEU B 368 N ALA B 349 SHEET 3 AB1 4 PHE B 404 ASP B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 AB1 4 LEU B 397 LEU B 398 -1 N LEU B 397 O ALA B 405 SHEET 1 AB2 4 GLN B 386 PRO B 387 0 SHEET 2 AB2 4 ALA B 378 SER B 383 -1 N SER B 383 O GLN B 386 SHEET 3 AB2 4 PHE B 423 MET B 428 -1 O SER B 424 N GLU B 382 SHEET 4 AB2 4 TYR B 436 LEU B 441 -1 O LYS B 439 N CYS B 425 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.04 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.03 SSBOND 3 CYS B 261 CYS B 321 1555 1555 2.03 SSBOND 4 CYS B 367 CYS B 425 1555 1555 2.03 LINK C PRO A 247 N MLY A 248 1555 1555 1.33 LINK C MLY A 248 N ASP A 249 1555 1555 1.34 LINK C VAL A 273 N MLZ A 274 1555 1555 1.34 LINK C MLZ A 274 N PHE A 275 1555 1555 1.34 LINK ND2 ASN A 297 C1 NAG C 1 1555 1555 1.43 LINK C PRO B 247 N MLY B 248 1555 1555 1.34 LINK C MLY B 248 N ASP B 249 1555 1555 1.33 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O6 NAG C 1 C1 FUL C 9 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O3 BMA C 3 C1 MAN C 7 1555 1555 1.44 LINK O2 MAN C 4 C1 NAG C 5 1555 1555 1.43 LINK O4 NAG C 5 C1 GAL C 6 1555 1555 1.45 LINK O2 MAN C 7 C1 NAG C 8 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.46 LINK O6 NAG D 1 C1 FUL D 9 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.46 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O3 BMA D 3 C1 MAN D 7 1555 1555 1.45 LINK O2 MAN D 4 C1 NAG D 5 1555 1555 1.44 LINK O4 NAG D 5 C1 GAL D 6 1555 1555 1.45 LINK O2 MAN D 7 C1 NAG D 8 1555 1555 1.43 CISPEP 1 TYR A 373 PRO A 374 0 -9.93 CISPEP 2 TYR B 373 PRO B 374 0 -4.14 CRYST1 49.780 73.650 141.530 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020088 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013578 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007066 0.00000