HEADER OXIDOREDUCTASE 18-OCT-16 5M42 TITLE STRUCTURE OF THERMUS THERMOPHILUS L-PROLINE DEHYDROGENASE LACKING TITLE 2 ALPHA HELICES A, B AND C COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLINE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PRODH,PROLINE OXIDASE,TTPRODH; COMPND 5 EC: 1.5.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB27; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 GENE: TT_C1214; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA8-ALPHA8-BARREL, FLAVOENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MARTINEZ-JULVEZ,M.M.E.HUIJBERS,W.J.H.VAN BERKEL,M.MEDINA REVDAT 2 17-JAN-24 5M42 1 REMARK REVDAT 1 15-MAR-17 5M42 0 JRNL AUTH M.M.HUIJBERS,M.MARTINEZ-JULVEZ,A.H.WESTPHAL, JRNL AUTH 2 E.DELGADO-ARCINIEGA,M.MEDINA,W.J.VAN BERKEL JRNL TITL PROLINE DEHYDROGENASE FROM THERMUS THERMOPHILUS DOES NOT JRNL TITL 2 DISCRIMINATE BETWEEN FAD AND FMN AS COFACTOR. JRNL REF SCI REP V. 7 43880 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28256579 JRNL DOI 10.1038/SREP43880 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 972 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1307 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1976 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 64 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.03000 REMARK 3 B22 (A**2) : -1.03000 REMARK 3 B33 (A**2) : 3.33000 REMARK 3 B12 (A**2) : -0.51000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.356 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2048 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2015 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2772 ; 2.081 ; 2.022 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4618 ; 1.096 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 241 ; 6.716 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;34.624 ;22.121 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 367 ;16.433 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;18.651 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 302 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2248 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 466 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 967 ; 3.217 ; 3.436 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 966 ; 3.202 ; 3.433 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1207 ; 4.613 ; 5.146 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1208 ; 4.612 ; 5.148 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1081 ; 4.383 ; 4.029 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1079 ; 4.369 ; 4.031 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1565 ; 6.775 ; 5.852 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2398 ; 8.982 ;29.422 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2391 ; 8.990 ;29.405 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5M42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001862. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18892 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 65.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2G37 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % V/V 2-PROPANOL, 0.2 M CALCIUM REMARK 280 CHLORIDE DIHYDRATE AND 0.1 M SODIUM ACETATE PH 4.6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.38667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 12.19333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.38667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.19333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 31 REMARK 465 SER A 32 REMARK 465 GLU A 33 REMARK 465 PHE A 34 REMARK 465 MET A 35 REMARK 465 ALA A 36 REMARK 465 LYS A 37 REMARK 465 ARG A 280 REMARK 465 ASP A 281 REMARK 465 TRP A 282 REMARK 465 TYR A 283 REMARK 465 PRO A 284 REMARK 465 TYR A 285 REMARK 465 LEU A 286 REMARK 465 THR A 287 REMARK 465 ARG A 288 REMARK 465 ARG A 289 REMARK 465 ILE A 290 REMARK 465 ALA A 291 REMARK 465 GLU A 292 REMARK 465 ARG A 293 REMARK 465 PRO A 294 REMARK 465 GLU A 295 REMARK 465 ASN A 296 REMARK 465 LEU A 297 REMARK 465 LEU A 298 REMARK 465 LEU A 299 REMARK 465 VAL A 300 REMARK 465 LEU A 301 REMARK 465 ARG A 302 REMARK 465 SER A 303 REMARK 465 LEU A 304 REMARK 465 VAL A 305 REMARK 465 SER A 306 REMARK 465 GLY A 307 REMARK 465 LEU A 308 REMARK 465 GLU A 309 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 109 CD GLU A 109 OE2 -0.081 REMARK 500 ARG A 139 CD ARG A 139 NE -0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 74 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 133 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 139 CG - CD - NE ANGL. DEV. = -14.8 DEGREES REMARK 500 ARG A 139 CD - NE - CZ ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 139 NE - CZ - NH2 ANGL. DEV. = -12.6 DEGREES REMARK 500 ARG A 191 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 258 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 108 118.55 -167.59 REMARK 500 GLU A 135 -147.70 -93.37 REMARK 500 GLN A 157 49.37 -94.64 REMARK 500 TYR A 255 122.21 -38.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 89 LYS A 90 147.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 2001 DBREF 5M42 A 39 307 UNP Q72IB8 PRODH_THET2 39 307 SEQADV 5M42 ILE A 31 UNP Q72IB8 EXPRESSION TAG SEQADV 5M42 SER A 32 UNP Q72IB8 EXPRESSION TAG SEQADV 5M42 GLU A 33 UNP Q72IB8 EXPRESSION TAG SEQADV 5M42 PHE A 34 UNP Q72IB8 EXPRESSION TAG SEQADV 5M42 MET A 35 UNP Q72IB8 EXPRESSION TAG SEQADV 5M42 ALA A 36 UNP Q72IB8 EXPRESSION TAG SEQADV 5M42 LYS A 37 UNP Q72IB8 EXPRESSION TAG SEQADV 5M42 ILE A 38 UNP Q72IB8 EXPRESSION TAG SEQADV 5M42 LEU A 308 UNP Q72IB8 EXPRESSION TAG SEQADV 5M42 GLU A 309 UNP Q72IB8 EXPRESSION TAG SEQRES 1 A 279 ILE SER GLU PHE MET ALA LYS ILE GLU THR LEU GLU GLU SEQRES 2 A 279 ALA LEU LYS ALA ALA GLU ALA LEU GLU ARG GLU GLY VAL SEQRES 3 A 279 HIS ALA ILE LEU ASP LEU LEU GLY GLU MET VAL ARG THR SEQRES 4 A 279 GLU GLU GLU ALA ARG ALA PHE GLN ARG GLY LEU LEU GLU SEQRES 5 A 279 LEU VAL TRP ALA LEU ALA GLY LYS PRO TRP PRO LYS TYR SEQRES 6 A 279 ILE SER LEU LYS LEU THR GLN LEU GLY LEU ASP LEU SER SEQRES 7 A 279 GLU ASP LEU ALA LEU ALA LEU LEU ARG GLU VAL LEU ARG SEQRES 8 A 279 GLU ALA GLU PRO ARG GLY VAL PHE VAL ARG LEU ASP MET SEQRES 9 A 279 GLU ASP SER PRO ARG VAL GLU ALA THR LEU ARG LEU TYR SEQRES 10 A 279 ARG ALA LEU ARG GLU GLU GLY PHE SER GLN VAL GLY ILE SEQRES 11 A 279 VAL LEU GLN SER TYR LEU TYR ARG THR GLU LYS ASP LEU SEQRES 12 A 279 LEU ASP LEU LEU PRO TYR ARG PRO ASN LEU ARG LEU VAL SEQRES 13 A 279 LYS GLY ALA TYR ARG GLU PRO LYS GLU VAL ALA PHE PRO SEQRES 14 A 279 ASP LYS ARG LEU ILE ASP ALA GLU TYR LEU HIS LEU GLY SEQRES 15 A 279 LYS LEU ALA LEU LYS GLU GLY LEU TYR VAL ALA PHE ALA SEQRES 16 A 279 THR HIS ASP PRO ARG ILE ILE ALA GLU LEU LYS ARG TYR SEQRES 17 A 279 THR GLU ALA MET GLY ILE PRO ARG SER ARG PHE GLU PHE SEQRES 18 A 279 GLN PHE LEU TYR GLY VAL ARG PRO GLU GLU GLN ARG ARG SEQRES 19 A 279 LEU ALA ARG GLU GLY TYR THR VAL ARG ALA TYR VAL PRO SEQRES 20 A 279 TYR GLY ARG ASP TRP TYR PRO TYR LEU THR ARG ARG ILE SEQRES 21 A 279 ALA GLU ARG PRO GLU ASN LEU LEU LEU VAL LEU ARG SER SEQRES 22 A 279 LEU VAL SER GLY LEU GLU HET FMN A2001 31 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 HOH *64(H2 O) HELIX 1 AA1 THR A 40 GLU A 54 1 15 HELIX 2 AA2 THR A 69 ALA A 88 1 20 HELIX 3 AA3 THR A 101 GLY A 104 5 4 HELIX 4 AA4 SER A 108 GLU A 124 1 17 HELIX 5 AA5 ASP A 136 PRO A 138 5 3 HELIX 6 AA6 ARG A 139 GLU A 153 1 15 HELIX 7 AA7 ARG A 168 LEU A 177 1 10 HELIX 8 AA8 PRO A 178 ARG A 180 5 3 HELIX 9 AA9 ASP A 200 GLU A 218 1 19 HELIX 10 AB1 ASP A 228 GLY A 243 1 16 HELIX 11 AB2 PRO A 245 SER A 247 5 3 HELIX 12 AB3 ARG A 258 GLU A 268 1 11 SHEET 1 AA1 9 HIS A 57 LEU A 62 0 SHEET 2 AA1 9 LYS A 94 LYS A 99 1 O TYR A 95 N LEU A 60 SHEET 3 AA1 9 VAL A 128 ASP A 133 1 O PHE A 129 N ILE A 96 SHEET 4 AA1 9 VAL A 158 GLN A 163 1 O GLY A 159 N LEU A 132 SHEET 5 AA1 9 LEU A 183 VAL A 186 1 O VAL A 186 N LEU A 162 SHEET 6 AA1 9 VAL A 222 ALA A 225 1 O ALA A 223 N LEU A 183 SHEET 7 AA1 9 PHE A 249 LEU A 254 1 O GLU A 250 N PHE A 224 SHEET 8 AA1 9 THR A 271 TYR A 278 1 O TYR A 275 N PHE A 253 SHEET 9 AA1 9 HIS A 57 LEU A 62 1 N ILE A 59 O VAL A 276 SITE 1 AC1 16 ASP A 133 MET A 134 VAL A 161 GLN A 163 SITE 2 AC1 16 ARG A 184 VAL A 186 LYS A 187 GLY A 188 SITE 3 AC1 16 ALA A 189 ALA A 225 THR A 226 HIS A 227 SITE 4 AC1 16 LEU A 254 TYR A 275 HOH A2102 HOH A2121 CRYST1 131.920 131.920 36.580 90.00 90.00 120.00 P 62 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007580 0.004377 0.000000 0.00000 SCALE2 0.000000 0.008753 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027337 0.00000