HEADER RIBOSOME 18-OCT-16 5M43 TITLE CRYSTAL STRUCTURE OF YVH1 PHOSPHATASE DOMAIN FROM CHAETOMIUM TITLE 2 THERMOPHILUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM DSM SOURCE 3 1495; SOURCE 4 ORGANISM_TAXID: 759272; SOURCE 5 GENE: CTHT_0021070; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS RIBOSOME, PHOSPHATASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.L.AHMED,I.SINNING REVDAT 3 17-JAN-24 5M43 1 REMARK REVDAT 2 08-FEB-17 5M43 1 JRNL REVDAT 1 30-NOV-16 5M43 0 JRNL AUTH J.BALER,Y.L.AHMED,M.KALLAS,M.KORNPROBST,F.R.CALVINO, JRNL AUTH 2 M.GNADIG,M.THOMS,G.STIER,S.ISMAIL,S.KHARDE,N.CASTILLO, JRNL AUTH 3 S.GRIESEL,S.BASTUCK,B.BRADATSCH,E.THOMSON,D.FLEMMING, JRNL AUTH 4 I.SINNING,E.HURT JRNL TITL INTERACTION NETWORK OF THE RIBOSOME ASSEMBLY MACHINERY FROM JRNL TITL 2 A EUKARYOTIC THERMOPHILE. JRNL REF PROTEIN SCI. V. 26 327 2017 JRNL REFN ESSN 1469-896X JRNL PMID 27863450 JRNL DOI 10.1002/PRO.3085 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ??? REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 25797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.280 REMARK 3 FREE R VALUE TEST SET COUNT : 1363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3951 - 3.5450 1.00 2656 145 0.1609 0.1933 REMARK 3 2 3.5450 - 2.8139 0.99 2525 142 0.1612 0.1666 REMARK 3 3 2.8139 - 2.4583 0.99 2456 157 0.1710 0.1841 REMARK 3 4 2.4583 - 2.2335 0.99 2436 141 0.1570 0.2062 REMARK 3 5 2.2335 - 2.0734 0.98 2436 130 0.1487 0.1785 REMARK 3 6 2.0734 - 1.9512 0.98 2438 110 0.1575 0.1692 REMARK 3 7 1.9512 - 1.8535 0.98 2403 140 0.1593 0.1628 REMARK 3 8 1.8535 - 1.7728 0.98 2399 119 0.1715 0.2260 REMARK 3 9 1.7728 - 1.7045 0.98 2387 133 0.1922 0.2082 REMARK 3 10 1.7045 - 1.6457 0.95 2298 146 0.2042 0.2433 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 1419 REMARK 3 ANGLE : 1.373 1917 REMARK 3 CHIRALITY : 0.103 207 REMARK 3 PLANARITY : 0.010 249 REMARK 3 DIHEDRAL : 15.822 849 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 22.4859 -0.3732 -9.4046 REMARK 3 T TENSOR REMARK 3 T11: 0.1142 T22: 0.1175 REMARK 3 T33: 0.3369 T12: 0.0046 REMARK 3 T13: 0.0068 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 1.9943 L22: 3.0795 REMARK 3 L33: 1.9839 L12: 0.9866 REMARK 3 L13: 0.6377 L23: 1.0163 REMARK 3 S TENSOR REMARK 3 S11: -0.0457 S12: -0.0820 S13: 0.1212 REMARK 3 S21: -0.1020 S22: 0.1164 S23: -0.2489 REMARK 3 S31: -0.1513 S32: 0.0045 S33: -0.0113 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5M43 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001874. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XSCALE REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.17, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25830 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.646 REMARK 200 RESOLUTION RANGE LOW (A) : 45.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1WRM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LINO3 20% PEG3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.53950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.37900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.37900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.80925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.37900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.37900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 13.26975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.37900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.37900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.80925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.37900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.37900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 13.26975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 26.53950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 583 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 86 REMARK 465 PRO A 87 REMARK 465 SER A 88 REMARK 465 ASP A 89 REMARK 465 SER A 90 REMARK 465 SER A 91 REMARK 465 ASP A 176 REMARK 465 ASP A 177 REMARK 465 ALA A 178 REMARK 465 VAL A 179 REMARK 465 GLU A 180 REMARK 465 ARG A 181 REMARK 465 GLU A 182 REMARK 465 PRO A 183 REMARK 465 ALA A 184 REMARK 465 TYR A 185 REMARK 465 GLN A 186 REMARK 465 ARG A 187 REMARK 465 TRP A 188 REMARK 465 LEU A 189 REMARK 465 TYR A 190 REMARK 465 GLN A 191 REMARK 465 ARG A 192 REMARK 465 GLU A 193 REMARK 465 VAL A 194 REMARK 465 GLU A 195 REMARK 465 ASP A 196 REMARK 465 ALA A 197 REMARK 465 ALA A 198 REMARK 465 ARG A 199 REMARK 465 ILE A 200 REMARK 465 GLY A 201 REMARK 465 ARG A 202 REMARK 465 ALA A 203 REMARK 465 PRO A 204 REMARK 465 ASP A 205 REMARK 465 ARG A 206 REMARK 465 LEU A 207 REMARK 465 ARG A 208 REMARK 465 PHE A 209 REMARK 465 GLU A 210 REMARK 465 ASP A 211 REMARK 465 GLU A 212 REMARK 465 ALA A 213 REMARK 465 ALA A 214 REMARK 465 THR A 215 REMARK 465 ALA A 216 REMARK 465 GLU A 217 REMARK 465 GLY A 218 REMARK 465 SER A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 406 O HOH A 472 1.84 REMARK 500 O HOH A 420 O HOH A 517 2.00 REMARK 500 O HOH A 549 O HOH A 584 2.05 REMARK 500 O HOH A 413 O HOH A 549 2.08 REMARK 500 O HOH A 509 O HOH A 601 2.16 REMARK 500 O HOH A 517 O HOH A 604 2.17 REMARK 500 OE1 GLU A 164 O HOH A 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 552 O HOH A 552 8554 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 165 CG - SD - CE ANGL. DEV. = 13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 37 58.27 -90.90 REMARK 500 CYS A 103 -136.38 -143.21 REMARK 500 LYS A 128 -17.48 -49.09 REMARK 500 SER A 129 52.16 -158.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 129 ASP A 130 132.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 622 DISTANCE = 5.98 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5M3Q RELATED DB: PDB DBREF 5M43 A 1 218 UNP G0S3H6 G0S3H6_CHATD 76 293 SEQADV 5M43 SER A 219 UNP G0S3H6 EXPRESSION TAG SEQADV 5M43 HIS A 220 UNP G0S3H6 EXPRESSION TAG SEQADV 5M43 HIS A 221 UNP G0S3H6 EXPRESSION TAG SEQADV 5M43 HIS A 222 UNP G0S3H6 EXPRESSION TAG SEQADV 5M43 HIS A 223 UNP G0S3H6 EXPRESSION TAG SEQADV 5M43 HIS A 224 UNP G0S3H6 EXPRESSION TAG SEQADV 5M43 HIS A 225 UNP G0S3H6 EXPRESSION TAG SEQRES 1 A 225 MET ALA LEU ASN ARG ILE LYS GLY ASP ASP GLU LEU PHE SEQRES 2 A 225 VAL GLY GLY VAL PHE GLY ALA ASN ARG ALA ARG LEU ILE SEQRES 3 A 225 LYS GLU HIS ARG ILE THR HIS ILE LEU SER VAL ILE ASP SEQRES 4 A 225 HIS THR VAL ASP ARG GLU ASN GLU ALA PHE ARG HIS VAL SEQRES 5 A 225 LYS HIS LEU SER ILE ASP ILE ASP ASP MET GLU ASP GLN SEQRES 6 A 225 ASP ILE LEU ILE HIS LEU PRO LYS ILE VAL ARG PHE ILE SEQRES 7 A 225 ASP SER GLY LEU ARG GLY ILE ASP PRO SER ASP SER SER SEQRES 8 A 225 ALA VAL ALA SER PRO GLY VAL VAL LEU VAL HIS CYS ALA SEQRES 9 A 225 MET GLY LYS SER ARG SER VAL THR ALA ILE ILE ALA TYR SEQRES 10 A 225 LEU LEU TRP LYS TYR PRO TYR ARG PHE GLY LYS SER ASP SEQRES 11 A 225 PRO ASN ILE SER ALA LYS GLU ALA VAL SER ARG ALA LEU SEQRES 12 A 225 GLU TRP VAL ARG GLU THR ARG PRO ILE ALA GLY PRO ASN SEQRES 13 A 225 ASP GLY PHE MET ARG GLN LEU GLU MET TRP TRP ASP MET SEQRES 14 A 225 GLY CYS PRO ALA ASP SER ASP ASP ALA VAL GLU ARG GLU SEQRES 15 A 225 PRO ALA TYR GLN ARG TRP LEU TYR GLN ARG GLU VAL GLU SEQRES 16 A 225 ASP ALA ALA ARG ILE GLY ARG ALA PRO ASP ARG LEU ARG SEQRES 17 A 225 PHE GLU ASP GLU ALA ALA THR ALA GLU GLY SER HIS HIS SEQRES 18 A 225 HIS HIS HIS HIS HET NO3 A 301 4 HET NO3 A 302 4 HET GOL A 303 6 HET GOL A 304 6 HETNAM NO3 NITRATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NO3 2(N O3 1-) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *222(H2 O) HELIX 1 AA1 GLY A 16 ASN A 21 1 6 HELIX 2 AA2 ARG A 22 ARG A 30 1 9 HELIX 3 AA3 ASN A 46 HIS A 51 1 6 HELIX 4 AA4 ILE A 67 ILE A 69 5 3 HELIX 5 AA5 HIS A 70 GLY A 84 1 15 HELIX 6 AA6 SER A 108 TYR A 122 1 15 HELIX 7 AA7 SER A 134 GLU A 148 1 15 HELIX 8 AA8 ASN A 156 MET A 169 1 14 SHEET 1 AA1 5 ASN A 4 ARG A 5 0 SHEET 2 AA1 5 LEU A 12 GLY A 15 -1 O VAL A 14 N ASN A 4 SHEET 3 AA1 5 VAL A 99 HIS A 102 1 O VAL A 99 N PHE A 13 SHEET 4 AA1 5 HIS A 33 SER A 36 1 N LEU A 35 O LEU A 100 SHEET 5 AA1 5 LYS A 53 SER A 56 1 O LEU A 55 N SER A 36 SITE 1 AC1 7 ASP A 61 CYS A 103 ALA A 104 MET A 105 SITE 2 AC1 7 LYS A 107 SER A 108 ARG A 109 SITE 1 AC2 4 TYR A 122 PRO A 123 TYR A 124 ARG A 125 SITE 1 AC3 7 ASP A 58 ILE A 59 GLN A 65 ASP A 66 SITE 2 AC3 7 HIS A 70 HOH A 428 HOH A 453 SITE 1 AC4 4 LYS A 128 TRP A 167 GLY A 170 HOH A 405 CRYST1 88.758 88.758 53.079 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011267 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011267 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018840 0.00000