HEADER TRANSFERASE 19-OCT-16 5M4Z TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF T.SPIRALIS THYMIDYLATE SYNTHASE TITLE 2 WITH N(4)-HYDROXY-2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE, CRYSTALLIZED IN TITLE 3 THE PRESENCE OF N(5,10)-METHYLENETETRAHYDROFOLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.45; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHINELLA SPIRALIS; SOURCE 3 ORGANISM_COMMON: TRICHINA WORM; SOURCE 4 ORGANISM_TAXID: 6334; SOURCE 5 GENE: TS, TSP_03568; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENZYME-INHIBITOR COMPLEX, HIGH-RESOLUTION STRUCTURE, ANTICANCER KEYWDS 2 TARGET, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.WILK,P.MAJ,A.JARMULA,A.DOWIERCIAL,W.RODE REVDAT 4 06-NOV-24 5M4Z 1 REMARK REVDAT 3 17-JAN-24 5M4Z 1 REMARK REVDAT 2 12-JAN-22 5M4Z 1 JRNL REMARK REVDAT 1 20-DEC-17 5M4Z 0 JRNL AUTH P.MAJ,A.JARMULA,P.WILK,M.PROKOPOWICZ,W.RYPNIEWSKI, JRNL AUTH 2 Z.ZIELINSKI,A.DOWIERCIAL,A.BZOWSKA,W.RODE JRNL TITL MOLECULAR MECHANISM OF THYMIDYLATE SYNTHASE INHIBITION BY N JRNL TITL 2 4 -HYDROXY-DCMP IN VIEW OF SPECTROPHOTOMETRIC AND JRNL TITL 3 CRYSTALLOGRAPHIC STUDIES. JRNL REF INT J MOL SCI V. 22 2021 JRNL REFN ESSN 1422-0067 JRNL PMID 33946210 JRNL DOI 10.3390/IJMS22094758 REMARK 2 REMARK 2 RESOLUTION. 1.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 172936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.151 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.1003 - 2.7716 0.99 13441 142 0.1424 0.1479 REMARK 3 2 2.7716 - 2.2001 1.00 13437 143 0.1236 0.1498 REMARK 3 3 2.2001 - 1.9221 0.99 13461 143 0.1097 0.1139 REMARK 3 4 1.9221 - 1.7464 0.99 13416 142 0.1077 0.1071 REMARK 3 5 1.7464 - 1.6212 0.99 13381 142 0.1163 0.1513 REMARK 3 6 1.6212 - 1.5257 0.99 13342 142 0.1201 0.1597 REMARK 3 7 1.5257 - 1.4493 0.98 13214 140 0.1325 0.1451 REMARK 3 8 1.4493 - 1.3862 0.98 13183 140 0.1535 0.1840 REMARK 3 9 1.3862 - 1.3328 0.98 13217 140 0.1703 0.1761 REMARK 3 10 1.3328 - 1.2868 0.97 13100 139 0.1868 0.1996 REMARK 3 11 1.2868 - 1.2466 0.97 13168 140 0.2110 0.2469 REMARK 3 12 1.2466 - 1.2109 0.95 12862 136 0.2396 0.2474 REMARK 3 13 1.2109 - 1.1791 0.89 11898 127 0.2812 0.2836 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4943 REMARK 3 ANGLE : 1.086 6699 REMARK 3 CHIRALITY : 0.080 703 REMARK 3 PLANARITY : 0.008 864 REMARK 3 DIHEDRAL : 16.262 1889 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5M4Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 172936 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.179 REMARK 200 RESOLUTION RANGE LOW (A) : 28.092 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.610 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : 16.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4G9U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NAF PH 7.1, 19% PEG 3350, 0.02% REMARK 280 NAN3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 LYS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 MET A -3 REMARK 465 HIS A -2 REMARK 465 ALA A -1 REMARK 465 GLN A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 THR A 4 REMARK 465 VAL A 5 REMARK 465 HIS A 6 REMARK 465 LYS A 7 REMARK 465 LEU A 8 REMARK 465 ASP A 9 REMARK 465 THR A 10 REMARK 465 ASN A 11 REMARK 465 SER A 12 REMARK 465 THR A 13 REMARK 465 SER A 14 REMARK 465 GLN A 15 REMARK 465 ASP A 16 REMARK 465 ASP A 17 REMARK 465 ASP A 42 REMARK 465 ARG A 43 REMARK 465 THR A 44 REMARK 465 MET B -12 REMARK 465 LYS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 MET B -3 REMARK 465 HIS B -2 REMARK 465 ALA B -1 REMARK 465 GLN B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLU B 3 REMARK 465 THR B 4 REMARK 465 VAL B 5 REMARK 465 HIS B 6 REMARK 465 LYS B 7 REMARK 465 LEU B 8 REMARK 465 ASP B 9 REMARK 465 THR B 10 REMARK 465 ASN B 11 REMARK 465 SER B 12 REMARK 465 THR B 13 REMARK 465 SER B 14 REMARK 465 GLN B 15 REMARK 465 ASP B 16 REMARK 465 ASP B 17 REMARK 465 PRO B 304 REMARK 465 MET B 305 REMARK 465 ALA B 306 REMARK 465 VAL B 307 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR B 252 H32 7K8 B 401 1.11 REMARK 500 HH TYR A 58 HO2 GOL A 402 1.12 REMARK 500 HD1 HIS B 190 HH TYR B 224 1.21 REMARK 500 HH TYR A 252 H32 7K8 A 401 1.30 REMARK 500 O HOH A 507 O HOH A 648 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 117 59.76 -95.28 REMARK 500 VAL A 128 -155.21 -94.16 REMARK 500 HIS A 135 33.97 -143.99 REMARK 500 LEU B 117 59.40 -96.64 REMARK 500 VAL B 128 -154.96 -92.83 REMARK 500 HIS B 135 31.88 -142.87 REMARK 500 SER B 141 -68.23 -109.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7K8 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 7K8 B 401 and CYS B REMARK 800 189 DBREF 5M4Z A 18 307 UNP Q9NDD3 Q9NDD3_TRISP 18 307 DBREF 5M4Z B 18 307 UNP Q9NDD3 Q9NDD3_TRISP 18 307 SEQADV 5M4Z MET A -12 UNP Q9NDD3 INITIATING METHIONINE SEQADV 5M4Z LYS A -11 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z HIS A -10 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z HIS A -9 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z HIS A -8 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z HIS A -7 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z HIS A -6 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z HIS A -5 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z HIS A -4 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z MET A -3 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z HIS A -2 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z ALA A -1 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z GLN A 0 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z MET A 1 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z THR A 2 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z GLU A 3 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z THR A 4 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z VAL A 5 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z HIS A 6 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z LYS A 7 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z LEU A 8 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z ASP A 9 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z THR A 10 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z ASN A 11 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z SER A 12 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z THR A 13 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z SER A 14 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z GLN A 15 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z ASP A 16 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z ASP A 17 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z MET B -12 UNP Q9NDD3 INITIATING METHIONINE SEQADV 5M4Z LYS B -11 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z HIS B -10 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z HIS B -9 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z HIS B -8 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z HIS B -7 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z HIS B -6 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z HIS B -5 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z HIS B -4 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z MET B -3 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z HIS B -2 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z ALA B -1 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z GLN B 0 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z MET B 1 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z THR B 2 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z GLU B 3 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z THR B 4 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z VAL B 5 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z HIS B 6 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z LYS B 7 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z LEU B 8 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z ASP B 9 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z THR B 10 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z ASN B 11 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z SER B 12 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z THR B 13 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z SER B 14 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z GLN B 15 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z ASP B 16 UNP Q9NDD3 EXPRESSION TAG SEQADV 5M4Z ASP B 17 UNP Q9NDD3 EXPRESSION TAG SEQRES 1 A 320 MET LYS HIS HIS HIS HIS HIS HIS HIS MET HIS ALA GLN SEQRES 2 A 320 MET THR GLU THR VAL HIS LYS LEU ASP THR ASN SER THR SEQRES 3 A 320 SER GLN ASP ASP TYR VAL ASN GLN GLU GLU LEU ASN TYR SEQRES 4 A 320 LEU ASN GLN LEU LYS ASP ILE ILE ASP HIS GLY VAL ARG SEQRES 5 A 320 LYS ASN ASP ARG THR GLY ILE GLY THR LEU SER THR PHE SEQRES 6 A 320 GLY THR GLN SER ARG TYR CYS LEU ARG ASP ASP ILE PHE SEQRES 7 A 320 PRO LEU LEU THR THR LYS ARG VAL PHE TRP ARG GLY VAL SEQRES 8 A 320 VAL GLU GLU LEU LEU TRP PHE ILE SER GLY SER THR ASN SEQRES 9 A 320 ALA LYS GLN LEU SER GLU LYS ASN VAL ASN ILE TRP ASP SEQRES 10 A 320 GLY ASN SER SER ARG GLU PHE LEU ASP SER ARG GLY LEU SEQRES 11 A 320 TYR ASN TYR GLU GLU GLY ASP LEU GLY PRO VAL TYR GLY SEQRES 12 A 320 PHE GLN TRP ARG HIS PHE GLY CYS PRO TYR SER SER MET SEQRES 13 A 320 THR ALA ASP TYR LYS GLY LYS GLY TYR ASP GLN LEU GLN SEQRES 14 A 320 GLN CYS ILE LYS MET ILE ARG GLU GLU PRO GLU SER ARG SEQRES 15 A 320 ARG ILE ILE MET THR ALA TRP ASN PRO CYS ASP LEU GLU SEQRES 16 A 320 LYS VAL ALA LEU PRO PRO CYS HIS CYS PHE VAL GLN PHE SEQRES 17 A 320 TYR VAL ALA ASP GLY GLU LEU SER CYS GLN MET TYR GLN SEQRES 18 A 320 ARG SER ALA ASP MET GLY LEU GLY VAL PRO PHE ASN ILE SEQRES 19 A 320 ALA SER TYR SER LEU LEU THR ARG MET ILE ALA HIS ILE SEQRES 20 A 320 THR SER LEU LYS PRO GLY PHE PHE ILE HIS THR ILE GLY SEQRES 21 A 320 ASP ALA HIS VAL TYR LEU THR HIS VAL ASP ALA LEU LYS SEQRES 22 A 320 VAL GLN MET GLU ARG LYS PRO ARG PRO PHE PRO LYS LEU SEQRES 23 A 320 LYS ILE LEU ARG ASN VAL GLU ASN ILE ASP ASP PHE ARG SEQRES 24 A 320 ALA GLU ASP PHE GLU LEU ILE ASN TYR LYS PRO TYR PRO SEQRES 25 A 320 LYS ILE SER MET PRO MET ALA VAL SEQRES 1 B 320 MET LYS HIS HIS HIS HIS HIS HIS HIS MET HIS ALA GLN SEQRES 2 B 320 MET THR GLU THR VAL HIS LYS LEU ASP THR ASN SER THR SEQRES 3 B 320 SER GLN ASP ASP TYR VAL ASN GLN GLU GLU LEU ASN TYR SEQRES 4 B 320 LEU ASN GLN LEU LYS ASP ILE ILE ASP HIS GLY VAL ARG SEQRES 5 B 320 LYS ASN ASP ARG THR GLY ILE GLY THR LEU SER THR PHE SEQRES 6 B 320 GLY THR GLN SER ARG TYR CYS LEU ARG ASP ASP ILE PHE SEQRES 7 B 320 PRO LEU LEU THR THR LYS ARG VAL PHE TRP ARG GLY VAL SEQRES 8 B 320 VAL GLU GLU LEU LEU TRP PHE ILE SER GLY SER THR ASN SEQRES 9 B 320 ALA LYS GLN LEU SER GLU LYS ASN VAL ASN ILE TRP ASP SEQRES 10 B 320 GLY ASN SER SER ARG GLU PHE LEU ASP SER ARG GLY LEU SEQRES 11 B 320 TYR ASN TYR GLU GLU GLY ASP LEU GLY PRO VAL TYR GLY SEQRES 12 B 320 PHE GLN TRP ARG HIS PHE GLY CYS PRO TYR SER SER MET SEQRES 13 B 320 THR ALA ASP TYR LYS GLY LYS GLY TYR ASP GLN LEU GLN SEQRES 14 B 320 GLN CYS ILE LYS MET ILE ARG GLU GLU PRO GLU SER ARG SEQRES 15 B 320 ARG ILE ILE MET THR ALA TRP ASN PRO CYS ASP LEU GLU SEQRES 16 B 320 LYS VAL ALA LEU PRO PRO CYS HIS CYS PHE VAL GLN PHE SEQRES 17 B 320 TYR VAL ALA ASP GLY GLU LEU SER CYS GLN MET TYR GLN SEQRES 18 B 320 ARG SER ALA ASP MET GLY LEU GLY VAL PRO PHE ASN ILE SEQRES 19 B 320 ALA SER TYR SER LEU LEU THR ARG MET ILE ALA HIS ILE SEQRES 20 B 320 THR SER LEU LYS PRO GLY PHE PHE ILE HIS THR ILE GLY SEQRES 21 B 320 ASP ALA HIS VAL TYR LEU THR HIS VAL ASP ALA LEU LYS SEQRES 22 B 320 VAL GLN MET GLU ARG LYS PRO ARG PRO PHE PRO LYS LEU SEQRES 23 B 320 LYS ILE LEU ARG ASN VAL GLU ASN ILE ASP ASP PHE ARG SEQRES 24 B 320 ALA GLU ASP PHE GLU LEU ILE ASN TYR LYS PRO TYR PRO SEQRES 25 B 320 LYS ILE SER MET PRO MET ALA VAL HET 7K8 A 401 34 HET GOL A 402 11 HET GOL A 403 11 HET GOL A 404 11 HET 7K8 B 401 34 HET GOL B 402 11 HET GOL B 403 11 HETNAM 7K8 [(2~{R},3~{S},5~{R})-5-[(4~{E})-4-HYDROXYIMINO-2- HETNAM 2 7K8 OXIDANYLIDENE-1,3-DIAZINAN-1-YL]-3-OXIDANYL-OXOLAN-2- HETNAM 3 7K8 YL]METHYL DIHYDROGEN PHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 7K8 2(C9 H16 N3 O8 P) FORMUL 4 GOL 5(C3 H8 O3) FORMUL 10 HOH *291(H2 O) HELIX 1 AA1 ASN A 20 GLY A 37 1 18 HELIX 2 AA2 ARG A 61 ILE A 64 5 4 HELIX 3 AA3 PHE A 74 SER A 87 1 14 HELIX 4 AA4 ASN A 91 LYS A 98 1 8 HELIX 5 AA5 SER A 108 ARG A 115 1 8 HELIX 6 AA6 VAL A 128 PHE A 136 1 9 HELIX 7 AA7 ASP A 153 GLU A 165 1 13 HELIX 8 AA8 ASN A 177 VAL A 184 5 8 HELIX 9 AA9 LEU A 215 THR A 235 1 21 HELIX 10 AB1 HIS A 255 GLU A 264 1 10 HELIX 11 AB2 ASN A 281 PHE A 285 5 5 HELIX 12 AB3 ARG A 286 GLU A 288 5 3 HELIX 13 AB4 ASN B 20 GLY B 37 1 18 HELIX 14 AB5 ARG B 61 ILE B 64 5 4 HELIX 15 AB6 PHE B 74 GLY B 88 1 15 HELIX 16 AB7 ASN B 91 GLU B 97 1 7 HELIX 17 AB8 ASP B 104 SER B 107 5 4 HELIX 18 AB9 SER B 108 ARG B 115 1 8 HELIX 19 AC1 VAL B 128 PHE B 136 1 9 HELIX 20 AC2 ASP B 153 GLU B 165 1 13 HELIX 21 AC3 ASN B 177 VAL B 184 5 8 HELIX 22 AC4 LEU B 215 THR B 235 1 21 HELIX 23 AC5 HIS B 255 GLU B 264 1 10 HELIX 24 AC6 ASN B 281 PHE B 285 5 5 HELIX 25 AC7 ARG B 286 GLU B 288 5 3 SHEET 1 AA1 6 VAL A 38 LYS A 40 0 SHEET 2 AA1 6 THR A 48 CYS A 59 -1 O THR A 48 N LYS A 40 SHEET 3 AA1 6 LYS A 238 TYR A 252 -1 O HIS A 244 N SER A 56 SHEET 4 AA1 6 GLU A 201 ASP A 212 1 N CYS A 204 O ILE A 243 SHEET 5 AA1 6 HIS A 190 ALA A 198 -1 N TYR A 196 O SER A 203 SHEET 6 AA1 6 ILE A 172 THR A 174 -1 N MET A 173 O VAL A 193 SHEET 1 AA2 2 LYS A 272 ILE A 275 0 SHEET 2 AA2 2 PHE A 290 ILE A 293 -1 O ILE A 293 N LYS A 272 SHEET 1 AA3 6 VAL B 38 LYS B 40 0 SHEET 2 AA3 6 THR B 48 CYS B 59 -1 O SER B 50 N VAL B 38 SHEET 3 AA3 6 LYS B 238 TYR B 252 -1 O HIS B 244 N SER B 56 SHEET 4 AA3 6 GLU B 201 ASP B 212 1 N LEU B 202 O GLY B 240 SHEET 5 AA3 6 HIS B 190 ALA B 198 -1 N TYR B 196 O SER B 203 SHEET 6 AA3 6 ILE B 172 THR B 174 -1 N MET B 173 O VAL B 193 SHEET 1 AA4 2 LYS B 272 ILE B 275 0 SHEET 2 AA4 2 PHE B 290 ILE B 293 -1 O ILE B 293 N LYS B 272 LINK SG CYS A 189 C6 7K8 A 401 1555 1555 1.78 LINK SG CYS B 189 C6 7K8 B 401 1555 1555 1.78 SITE 1 AC1 16 TYR A 129 CYS A 189 HIS A 190 GLN A 208 SITE 2 AC1 16 ARG A 209 SER A 210 ALA A 211 ASP A 212 SITE 3 AC1 16 ASN A 220 HIS A 250 TYR A 252 HOH A 502 SITE 4 AC1 16 HOH A 553 ARG B 169 ARG B 170 HOH B 578 SITE 1 AC2 8 GLN A 29 THR A 54 GLN A 55 SER A 56 SITE 2 AC2 8 TYR A 58 ILE A 221 HIS A 244 ILE A 246 SITE 1 AC3 9 TYR A 152 GLN A 154 GLN A 157 MET A 161 SITE 2 AC3 9 ARG A 170 ILE A 172 HOH A 510 TRP B 176 SITE 3 AC3 9 LEU B 181 SITE 1 AC4 6 ALA A 92 LYS A 93 SER A 96 ASP A 104 SITE 2 AC4 6 SER A 107 SER A 108 SITE 1 AC5 9 TRP A 176 LEU A 181 TYR B 152 GLN B 154 SITE 2 AC5 9 GLN B 157 MET B 161 ARG B 170 ILE B 172 SITE 3 AC5 9 HOH B 544 SITE 1 AC6 7 ARG A 57 TYR A 196 SER A 203 ILE A 243 SITE 2 AC6 7 HOH A 515 THR B 51 PHE B 52 SITE 1 AC7 19 ARG A 169 ARG A 170 ARG B 43 TRP B 103 SITE 2 AC7 19 TYR B 129 PRO B 187 PRO B 188 HIS B 190 SITE 3 AC7 19 CYS B 191 GLN B 208 ARG B 209 SER B 210 SITE 4 AC7 19 ALA B 211 ASP B 212 ASN B 220 HIS B 250 SITE 5 AC7 19 TYR B 252 HOH B 502 HOH B 568 CRYST1 51.290 52.780 63.920 72.47 68.03 61.15 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019497 -0.010742 -0.006341 0.00000 SCALE2 0.000000 0.021632 -0.003251 0.00000 SCALE3 0.000000 0.000000 0.017060 0.00000