HEADER OXIDOREDUCTASE 21-OCT-16 5M5J TITLE THIOREDOXIN REDUCTASE FROM GIARDIA DUODENALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.8.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GIARDIA INTESTINALIS; SOURCE 3 ORGANISM_TAXID: 5741; SOURCE 4 GENE: GL50803_9827; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REDUCTASE, FLAVOPROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.FIORILLO,A.ILARI,M.LALLE REVDAT 3 17-JAN-24 5M5J 1 REMARK REVDAT 2 24-MAY-17 5M5J 1 JRNL REVDAT 1 17-MAY-17 5M5J 0 JRNL AUTH S.BROGI,A.FIORILLO,G.CHEMI,S.BUTINI,M.LALLE,A.ILARI,S.GEMMA, JRNL AUTH 2 G.CAMPIANI JRNL TITL STRUCTURAL CHARACTERIZATION OF GIARDIA DUODENALIS JRNL TITL 2 THIOREDOXIN REDUCTASE (GTRXR) AND COMPUTATIONAL ANALYSIS OF JRNL TITL 3 ITS INTERACTION WITH NBDHEX. JRNL REF EUR J MED CHEM V. 135 479 2017 JRNL REFN ISSN 1768-3254 JRNL PMID 28477573 JRNL DOI 10.1016/J.EJMECH.2017.04.057 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 956 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1248 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4596 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 107 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.75000 REMARK 3 B22 (A**2) : -1.75000 REMARK 3 B33 (A**2) : 3.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.367 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.275 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.432 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4801 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4492 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6525 ; 1.236 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10322 ; 0.888 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 623 ; 5.467 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;35.102 ;24.521 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 773 ;14.468 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;16.640 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 753 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5438 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1039 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2486 ; 1.710 ; 4.571 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2485 ; 1.708 ; 4.571 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3105 ; 2.922 ; 6.852 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3106 ; 2.921 ; 6.852 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2315 ; 1.516 ; 4.572 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2316 ; 1.516 ; 4.572 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3419 ; 2.621 ; 6.790 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5195 ; 4.733 ;35.093 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5195 ; 4.733 ;35.093 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 123 A 240 6 REMARK 3 1 B 123 B 240 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1578 ; 0.69 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1578 ; 19.83 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 10 A 110 5 REMARK 3 1 B 10 B 110 5 REMARK 3 2 A 230 A 310 5 REMARK 3 2 B 230 B 310 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 1064 ; 1.00 ; 0.50 REMARK 3 LOOSE POSITIONAL 2 A (A): 1568 ; 1.33 ; 5.00 REMARK 3 MEDIUM THERMAL 2 A (A**2): 1064 ; 7.88 ; 2.00 REMARK 3 LOOSE THERMAL 2 A (A**2): 1568 ; 8.75 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5M5J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001981. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18404 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 48.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 16.00 REMARK 200 R MERGE (I) : 0.26200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 15.30 REMARK 200 R MERGE FOR SHELL (I) : 1.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3D8X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS HYDROCHLORIDE 0.1 M PH 6.5, REMARK 280 PEG 5000 MME 20% W/V, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.61050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.82150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.82150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.80525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.82150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.82150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 122.41575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.82150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.82150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.80525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.82150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.82150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 122.41575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.61050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 GLN A 313 REMARK 465 GLU A 314 REMARK 465 MET B -10 REMARK 465 ARG B -9 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 SER B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 ARG B 120 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 122 CG OD1 OD2 REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 GLU B 126 CG CD OE1 OE2 REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 GLU B 128 CG CD OE1 OE2 REMARK 470 TRP B 130 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 130 CZ3 CH2 REMARK 470 GLN B 131 CG CD OE1 NE2 REMARK 470 VAL B 134 CG1 CG2 REMARK 470 ARG B 178 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 179 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 181 CG CD CE NZ REMARK 470 ARG B 183 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 190 CG CD CE NZ REMARK 470 LYS B 191 CD CE NZ REMARK 470 LYS B 210 CD CE NZ REMARK 470 LYS B 214 CG CD CE NZ REMARK 470 LYS B 222 CD CE NZ REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 GLU B 259 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 48 -75.85 -95.61 REMARK 500 SER A 55 -6.69 91.76 REMARK 500 ALA A 113 54.73 -148.26 REMARK 500 ILE B 38 -51.19 -132.10 REMARK 500 SER B 55 -0.33 91.92 REMARK 500 ALA B 113 49.61 -141.92 REMARK 500 LYS B 214 -65.07 -97.79 REMARK 500 ALA B 240 42.93 -148.53 REMARK 500 ASP B 267 77.76 -150.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1002 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 82 OE2 REMARK 620 2 GLU B 103 OE2 117.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 1002 DBREF 5M5J A 2 314 UNP E2RU27 E2RU27_GIAIC 2 314 DBREF 5M5J B 2 314 UNP E2RU27 E2RU27_GIAIC 2 314 SEQADV 5M5J MET A -10 UNP E2RU27 INITIATING METHIONINE SEQADV 5M5J ARG A -9 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J GLY A -8 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J SER A -7 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J HIS A -6 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J HIS A -5 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J HIS A -4 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J HIS A -3 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J HIS A -2 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J HIS A -1 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J GLY A 0 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J SER A 1 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J MET B -10 UNP E2RU27 INITIATING METHIONINE SEQADV 5M5J ARG B -9 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J GLY B -8 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J SER B -7 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J HIS B -6 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J HIS B -5 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J HIS B -4 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J HIS B -3 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J HIS B -2 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J HIS B -1 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J GLY B 0 UNP E2RU27 EXPRESSION TAG SEQADV 5M5J SER B 1 UNP E2RU27 EXPRESSION TAG SEQRES 1 A 325 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER SER SEQRES 2 A 325 THR GLN ARG HIS VAL ARG ILE GLY ILE ILE GLY GLY GLY SEQRES 3 A 325 PRO ALA GLY LEU THR ALA GLY ILE TYR ALA SER ARG ALA SEQRES 4 A 325 ASN LEU LYS THR CYS VAL PHE VAL GLY ILE GLU HIS THR SEQRES 5 A 325 SER GLN MET PHE THR THR THR ASP VAL GLU ASN PHE PRO SEQRES 6 A 325 SER HIS THR ALA ILE LYS GLY PRO ALA LEU MET GLU ALA SEQRES 7 A 325 ILE GLN ASN GLN ALA GLU HIS CYS GLY ALA GLU LEU LEU SEQRES 8 A 325 TYR GLU ASP VAL HIS SER ILE ASP VAL SER SER ARG PRO SEQRES 9 A 325 PHE LYS ILE VAL HIS GLY TYR GLU ASN GLU THR THR LEU SEQRES 10 A 325 ALA ASP ALA LEU ILE ILE ALA THR GLY ALA THR ALA ARG SEQRES 11 A 325 ARG LEU ASP CYS LYS GLY GLU LYS GLU TYR TRP GLN LYS SEQRES 12 A 325 GLY VAL SER ALA CYS ALA VAL CYS ASP SER ALA MET ALA SEQRES 13 A 325 THR GLY LYS GLU VAL VAL VAL VAL GLY GLY GLY ASP VAL SEQRES 14 A 325 ALA CYS GLU GLU ALA THR TYR LEU THR LYS ILE ALA THR SEQRES 15 A 325 LYS VAL TYR MET VAL LEU ARG ARG ASP LYS PHE ARG ALA SEQRES 16 A 325 SER ALA ALA MET VAL LYS LYS VAL MET ASN GLU LYS LEU SEQRES 17 A 325 ILE GLU ILE ILE TYR ASP SER ALA ILE ASP GLU ILE LYS SEQRES 18 A 325 GLY ASP GLY LYS CYS VAL THR SER VAL SER ILE LYS ASN SEQRES 19 A 325 LEU LYS ASP GLY LYS THR ARG THR LEU ASN ALA GLY ALA SEQRES 20 A 325 LEU TYR TRP ALA VAL GLY HIS ASP PRO GLN THR SER PHE SEQRES 21 A 325 LEU LYS LYS GLY GLN LEU GLU GLN ASP GLU ALA GLY TYR SEQRES 22 A 325 ILE LEU LEU LYS ASP HIS PRO THR GLN ARG THR SER VAL SEQRES 23 A 325 ASP GLY VAL PHE ALA ALA GLY ASP CYS CYS ASP HIS LEU SEQRES 24 A 325 TYR ARG GLN ALA VAL VAL ALA ALA GLY SER GLY SER LYS SEQRES 25 A 325 ALA ALA LEU ASP ALA GLU ARG TRP LEU ALA MET GLN GLU SEQRES 1 B 325 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER SER SEQRES 2 B 325 THR GLN ARG HIS VAL ARG ILE GLY ILE ILE GLY GLY GLY SEQRES 3 B 325 PRO ALA GLY LEU THR ALA GLY ILE TYR ALA SER ARG ALA SEQRES 4 B 325 ASN LEU LYS THR CYS VAL PHE VAL GLY ILE GLU HIS THR SEQRES 5 B 325 SER GLN MET PHE THR THR THR ASP VAL GLU ASN PHE PRO SEQRES 6 B 325 SER HIS THR ALA ILE LYS GLY PRO ALA LEU MET GLU ALA SEQRES 7 B 325 ILE GLN ASN GLN ALA GLU HIS CYS GLY ALA GLU LEU LEU SEQRES 8 B 325 TYR GLU ASP VAL HIS SER ILE ASP VAL SER SER ARG PRO SEQRES 9 B 325 PHE LYS ILE VAL HIS GLY TYR GLU ASN GLU THR THR LEU SEQRES 10 B 325 ALA ASP ALA LEU ILE ILE ALA THR GLY ALA THR ALA ARG SEQRES 11 B 325 ARG LEU ASP CYS LYS GLY GLU LYS GLU TYR TRP GLN LYS SEQRES 12 B 325 GLY VAL SER ALA CYS ALA VAL CYS ASP SER ALA MET ALA SEQRES 13 B 325 THR GLY LYS GLU VAL VAL VAL VAL GLY GLY GLY ASP VAL SEQRES 14 B 325 ALA CYS GLU GLU ALA THR TYR LEU THR LYS ILE ALA THR SEQRES 15 B 325 LYS VAL TYR MET VAL LEU ARG ARG ASP LYS PHE ARG ALA SEQRES 16 B 325 SER ALA ALA MET VAL LYS LYS VAL MET ASN GLU LYS LEU SEQRES 17 B 325 ILE GLU ILE ILE TYR ASP SER ALA ILE ASP GLU ILE LYS SEQRES 18 B 325 GLY ASP GLY LYS CYS VAL THR SER VAL SER ILE LYS ASN SEQRES 19 B 325 LEU LYS ASP GLY LYS THR ARG THR LEU ASN ALA GLY ALA SEQRES 20 B 325 LEU TYR TRP ALA VAL GLY HIS ASP PRO GLN THR SER PHE SEQRES 21 B 325 LEU LYS LYS GLY GLN LEU GLU GLN ASP GLU ALA GLY TYR SEQRES 22 B 325 ILE LEU LEU LYS ASP HIS PRO THR GLN ARG THR SER VAL SEQRES 23 B 325 ASP GLY VAL PHE ALA ALA GLY ASP CYS CYS ASP HIS LEU SEQRES 24 B 325 TYR ARG GLN ALA VAL VAL ALA ALA GLY SER GLY SER LYS SEQRES 25 B 325 ALA ALA LEU ASP ALA GLU ARG TRP LEU ALA MET GLN GLU HET FAD A1001 53 HET FAD B1001 53 HET NA B1002 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NA SODIUM ION FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 NA NA 1+ FORMUL 6 HOH *39(H2 O) HELIX 1 AA1 GLY A 15 ALA A 28 1 14 HELIX 2 AA2 SER A 42 THR A 47 5 6 HELIX 3 AA3 GLY A 61 GLY A 76 1 16 HELIX 4 AA4 ASP A 141 ALA A 145 5 5 HELIX 5 AA5 GLY A 156 THR A 167 1 12 HELIX 6 AA6 SER A 185 ASN A 194 1 10 HELIX 7 AA7 GLY A 282 CYS A 285 5 4 HELIX 8 AA8 GLN A 291 ALA A 311 1 21 HELIX 9 AA9 GLY B 15 ALA B 28 1 14 HELIX 10 AB1 SER B 42 THR B 47 1 6 HELIX 11 AB2 GLY B 61 GLY B 76 1 16 HELIX 12 AB3 ASP B 141 THR B 146 1 6 HELIX 13 AB4 GLY B 156 THR B 167 1 12 HELIX 14 AB5 SER B 185 ASN B 194 1 10 HELIX 15 AB6 GLY B 282 ASP B 286 5 5 HELIX 16 AB7 GLN B 291 GLU B 314 1 24 SHEET 1 AA1 6 GLU A 78 LEU A 80 0 SHEET 2 AA1 6 THR A 32 PHE A 35 1 N VAL A 34 O GLU A 78 SHEET 3 AA1 6 ARG A 5 ILE A 12 1 N ILE A 11 O PHE A 35 SHEET 4 AA1 6 GLU A 103 ILE A 112 1 O ALA A 109 N GLY A 10 SHEET 5 AA1 6 PHE A 94 HIS A 98 -1 N ILE A 96 O THR A 105 SHEET 6 AA1 6 VAL A 84 ASP A 88 -1 N HIS A 85 O VAL A 97 SHEET 1 AA2 5 GLU A 78 LEU A 80 0 SHEET 2 AA2 5 THR A 32 PHE A 35 1 N VAL A 34 O GLU A 78 SHEET 3 AA2 5 ARG A 5 ILE A 12 1 N ILE A 11 O PHE A 35 SHEET 4 AA2 5 GLU A 103 ILE A 112 1 O ALA A 109 N GLY A 10 SHEET 5 AA2 5 VAL A 278 ALA A 280 1 O PHE A 279 N ILE A 112 SHEET 1 AA3 2 ASP A 49 VAL A 50 0 SHEET 2 AA3 2 ILE A 59 LYS A 60 -1 O ILE A 59 N VAL A 50 SHEET 1 AA4 2 ALA A 116 ALA A 118 0 SHEET 2 AA4 2 HIS A 243 PRO A 245 -1 O ASP A 244 N THR A 117 SHEET 1 AA5 5 VAL A 134 SER A 135 0 SHEET 2 AA5 5 ALA A 236 TRP A 239 1 O TRP A 239 N SER A 135 SHEET 3 AA5 5 GLU A 149 VAL A 153 1 N VAL A 153 O TYR A 238 SHEET 4 AA5 5 LYS A 172 VAL A 176 1 O TYR A 174 N VAL A 152 SHEET 5 AA5 5 ILE A 198 ILE A 201 1 O ILE A 201 N MET A 175 SHEET 1 AA6 3 SER A 204 GLY A 211 0 SHEET 2 AA6 3 VAL A 216 ASN A 223 -1 O SER A 218 N LYS A 210 SHEET 3 AA6 3 THR A 229 LEU A 232 -1 O ARG A 230 N ILE A 221 SHEET 1 AA7 6 GLU B 78 LEU B 80 0 SHEET 2 AA7 6 THR B 32 PHE B 35 1 N VAL B 34 O GLU B 78 SHEET 3 AA7 6 ARG B 5 ILE B 12 1 N ILE B 11 O PHE B 35 SHEET 4 AA7 6 GLU B 103 ILE B 112 1 O LEU B 106 N ARG B 5 SHEET 5 AA7 6 PHE B 94 HIS B 98 -1 N ILE B 96 O THR B 105 SHEET 6 AA7 6 VAL B 84 ASP B 88 -1 N HIS B 85 O VAL B 97 SHEET 1 AA8 5 GLU B 78 LEU B 80 0 SHEET 2 AA8 5 THR B 32 PHE B 35 1 N VAL B 34 O GLU B 78 SHEET 3 AA8 5 ARG B 5 ILE B 12 1 N ILE B 11 O PHE B 35 SHEET 4 AA8 5 GLU B 103 ILE B 112 1 O LEU B 106 N ARG B 5 SHEET 5 AA8 5 VAL B 278 ALA B 280 1 O PHE B 279 N LEU B 110 SHEET 1 AA9 2 ASP B 49 VAL B 50 0 SHEET 2 AA9 2 ILE B 59 LYS B 60 -1 O ILE B 59 N VAL B 50 SHEET 1 AB1 2 ALA B 116 THR B 117 0 SHEET 2 AB1 2 ASP B 244 PRO B 245 -1 O ASP B 244 N THR B 117 SHEET 1 AB2 5 VAL B 134 SER B 135 0 SHEET 2 AB2 5 ALA B 236 TRP B 239 1 O TRP B 239 N SER B 135 SHEET 3 AB2 5 GLU B 149 VAL B 153 1 N VAL B 151 O TYR B 238 SHEET 4 AB2 5 LYS B 172 VAL B 176 1 O TYR B 174 N VAL B 152 SHEET 5 AB2 5 ILE B 198 ILE B 201 1 O ILE B 201 N MET B 175 SHEET 1 AB3 3 SER B 204 GLY B 211 0 SHEET 2 AB3 3 VAL B 216 ASN B 223 -1 O SER B 220 N GLU B 208 SHEET 3 AB3 3 THR B 229 ASN B 233 -1 O LEU B 232 N VAL B 219 SSBOND 1 CYS A 137 CYS A 140 1555 1555 2.07 SSBOND 2 CYS B 137 CYS B 140 1555 1555 2.04 LINK OE2 GLU B 82 NA NA B1002 1555 1555 2.68 LINK OE2 GLU B 103 NA NA B1002 1555 1555 2.75 CISPEP 1 ARG A 92 PRO A 93 0 0.01 CISPEP 2 ARG A 92 PRO A 93 0 1.45 CISPEP 3 HIS A 268 PRO A 269 0 2.66 CISPEP 4 ARG B 92 PRO B 93 0 8.19 CISPEP 5 HIS B 268 PRO B 269 0 2.62 SITE 1 AC1 33 GLY A 13 GLY A 14 GLY A 15 PRO A 16 SITE 2 AC1 33 ALA A 17 PHE A 35 VAL A 36 HIS A 40 SITE 3 AC1 33 THR A 41 SER A 42 GLN A 43 THR A 47 SITE 4 AC1 33 VAL A 50 ASN A 52 VAL A 84 ALA A 113 SITE 5 AC1 33 THR A 114 GLY A 115 TRP A 130 GLN A 131 SITE 6 AC1 33 CYS A 140 GLY A 282 ASP A 283 ARG A 290 SITE 7 AC1 33 GLN A 291 ALA A 292 HOH A1105 HOH A1106 SITE 8 AC1 33 HOH A1107 HOH A1109 HOH A1110 HOH A1111 SITE 9 AC1 33 HOH A1115 SITE 1 AC2 30 TYR A 24 GLY B 13 GLY B 14 GLY B 15 SITE 2 AC2 30 PRO B 16 ALA B 17 PHE B 35 VAL B 36 SITE 3 AC2 30 HIS B 40 THR B 41 SER B 42 GLN B 43 SITE 4 AC2 30 MET B 44 THR B 47 ASN B 52 ASP B 83 SITE 5 AC2 30 VAL B 84 ALA B 113 THR B 114 GLY B 115 SITE 6 AC2 30 GLY B 282 ASP B 283 ARG B 290 GLN B 291 SITE 7 AC2 30 ALA B 292 ALA B 295 HOH B1103 HOH B1107 SITE 8 AC2 30 HOH B1109 HOH B1110 SITE 1 AC3 3 ARG B 5 GLU B 82 GLU B 103 CRYST1 85.643 85.643 163.221 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011676 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011676 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006127 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.567559 -0.293163 -0.769371 -63.20219 1 MTRIX2 2 0.338032 -0.935041 0.106927 21.94482 1 MTRIX3 2 -0.750741 -0.199384 0.629789 -24.95962 1