HEADER ISOMERASE 25-OCT-16 5M6P OBSLTE 02-JUN-21 5M6P 6TA8 TITLE CRYSTAL STRUCTURE OF THE EPIMERIZATION DOMAIN FROM MODULE 3 OF TITLE 2 TYROCIDINE SYNTHETASE B, TYCB3(E) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROCIDINE SYNTHASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 3113-3587; COMPND 5 SYNONYM: TYROCIDINE SYNTHASE II; COMPND 6 EC: 5.1.1.11; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVIBACILLUS PARABREVIS; SOURCE 3 ORGANISM_TAXID: 54914; SOURCE 4 GENE: TYCB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NRPS, EPIMERIZATION DOMAIN, CHLORAMPHENICOL ACETYLTRANSFERASE, KEYWDS 2 EPIMERASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.D.FAGE,M.A.MARAHIEL REVDAT 3 02-JUN-21 5M6P 1 OBSLTE REVDAT 2 23-MAY-18 5M6P 1 TITLE REVDAT 1 20-DEC-17 5M6P 0 JRNL AUTH C.D.FAGE,D.YAN,A.MIELCAREK,R.M.STEINBACH,A.J.NEBEL,U.LINNE, JRNL AUTH 2 M.A.MARAHIEL JRNL TITL COMMUNICATION BREAKDOWN: DISSECTING THE COM INTERFACES JRNL TITL 2 BETWEEN THE SUBUNITS OF NONRIBOSOMAL PEPTIDE SYNTHETASES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1-2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42937 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4553 - 6.4077 1.00 2724 141 0.2154 0.2691 REMARK 3 2 6.4077 - 5.0877 1.00 2712 164 0.2365 0.2405 REMARK 3 3 5.0877 - 4.4451 1.00 2713 145 0.2111 0.2358 REMARK 3 4 4.4451 - 4.0389 1.00 2730 136 0.2184 0.2667 REMARK 3 5 4.0389 - 3.7495 1.00 2711 141 0.2297 0.3076 REMARK 3 6 3.7495 - 3.5286 1.00 2741 139 0.2418 0.2805 REMARK 3 7 3.5286 - 3.3519 1.00 2684 127 0.2507 0.3170 REMARK 3 8 3.3519 - 3.2060 1.00 2731 163 0.2572 0.3106 REMARK 3 9 3.2060 - 3.0826 1.00 2708 138 0.2924 0.3380 REMARK 3 10 3.0826 - 2.9762 1.00 2722 142 0.2886 0.3212 REMARK 3 11 2.9762 - 2.8832 1.00 2698 151 0.3048 0.3588 REMARK 3 12 2.8832 - 2.8008 1.00 2752 138 0.3140 0.3772 REMARK 3 13 2.8008 - 2.7271 1.00 2694 148 0.3058 0.3522 REMARK 3 14 2.7271 - 2.6605 1.00 2742 135 0.3166 0.3456 REMARK 3 15 2.6605 - 2.6001 1.00 2742 125 0.3151 0.4031 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7339 REMARK 3 ANGLE : 0.750 9946 REMARK 3 CHIRALITY : 0.046 1097 REMARK 3 PLANARITY : 0.004 1289 REMARK 3 DIHEDRAL : 14.670 4352 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESSEQ 3117:3154 OR RESSEQ REMARK 3 3156:3158 OR (RESID 3159 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG OR NAME OD1)) OR RESSEQ 3160:3182 REMARK 3 OR RESSEQ 3184 OR (RESID 3185 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 OR NAME CG OR NAME OD2)) OR RESSEQ 3186: REMARK 3 3201 OR (RESID 3202 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB OR NAME REMARK 3 CG OR NAME CD1 OR NAME CE1 OR NAME CZ )) REMARK 3 OR RESSEQ 3203:3207 OR RESSEQ 3209:3211 REMARK 3 OR RESSEQ 3213:3305 OR (RESID 3306 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG OR NAME OD1)) OR REMARK 3 RESSEQ 3307:3318 OR RESSEQ 3320:3336 OR REMARK 3 RESSEQ 3338:3357 OR RESSEQ 3359:3361 OR REMARK 3 RESSEQ 3363:3364 OR RESSEQ 3366:3424 OR REMARK 3 RESSEQ 3427:3442 OR RESSEQ 3444:3451 OR REMARK 3 RESSEQ 3453:3475 OR (RESID 3476 AND (NAME REMARK 3 N OR NAME CA OR NAME C OR NAME O OR NAME REMARK 3 CB OR NAME CG OR NAME CD1 OR NAME CE1 OR REMARK 3 NAME CZ )) OR RESSEQ 3477:3480 OR RESSEQ REMARK 3 3482 OR RESSEQ 3490:3492 OR (RESID 3493 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME CD2 OR REMARK 3 NAME CE2 OR NAME CZ )) OR RESSEQ 3494: REMARK 3 3512 OR (RESID 3513 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB OR NAME REMARK 3 CG OR NAME OD1)) OR RESSEQ 3514:3536 OR REMARK 3 RESSEQ 3538:3546 OR RESSEQ 3549:3553 OR REMARK 3 RESSEQ 3555:3560)) REMARK 3 SELECTION : (CHAIN B AND (RESSEQ 3117:3154 OR RESSEQ REMARK 3 3156:3158 OR (RESID 3159 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG OR NAME OD1)) OR RESSEQ 3160:3182 REMARK 3 OR RESSEQ 3184 OR (RESID 3185 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 OR NAME CG OR NAME OD2)) OR RESSEQ 3186: REMARK 3 3201 OR (RESID 3202 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB OR NAME REMARK 3 CG OR NAME CD1 OR NAME CE1 OR NAME CZ )) REMARK 3 OR RESSEQ 3203:3207 OR RESSEQ 3209:3211 REMARK 3 OR RESSEQ 3213:3305 OR (RESID 3306 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG OR NAME OD1)) OR REMARK 3 RESSEQ 3307:3318 OR RESSEQ 3320:3336 OR REMARK 3 RESSEQ 3338:3357 OR RESSEQ 3359:3361 OR REMARK 3 RESSEQ 3363:3364 OR RESSEQ 3366:3424 OR REMARK 3 RESSEQ 3427:3442 OR RESSEQ 3444:3451 OR REMARK 3 RESSEQ 3453:3475 OR (RESID 3476 AND (NAME REMARK 3 N OR NAME CA OR NAME C OR NAME O OR NAME REMARK 3 CB OR NAME CG OR NAME CD1 OR NAME CE1 OR REMARK 3 NAME CZ )) OR RESSEQ 3477:3480 OR RESSEQ REMARK 3 3482 OR RESSEQ 3490:3492 OR (RESID 3493 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME CD2 OR REMARK 3 NAME CE2 OR NAME CZ )) OR RESSEQ 3494: REMARK 3 3512 OR (RESID 3513 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB OR NAME REMARK 3 CG OR NAME OD1)) OR RESSEQ 3514:3536 OR REMARK 3 RESSEQ 3538:3546 OR RESSEQ 3549:3553 OR REMARK 3 RESSEQ 3555:3560)) REMARK 3 ATOM PAIRS NUMBER : 3710 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5M6P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS MAY 1, 2016 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 1.10.26 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42946 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 48.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.88500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.10.1-2155 REMARK 200 STARTING MODEL: PHYRE2 MODEL OF 5ISX (RESIDUES 622-1071) REMARK 200 REMARK 200 REMARK: PLATE-LIKE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM NITRATE, 20% (W/V) PEG REMARK 280 3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 60.42300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.88524 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.45967 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 60.42300 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 34.88524 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 85.45967 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 60.42300 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 34.88524 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.45967 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.77047 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 170.91933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 69.77047 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 170.91933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 69.77047 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 170.91933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 3092 REMARK 465 GLY A 3093 REMARK 465 SER A 3094 REMARK 465 SER A 3095 REMARK 465 HIS A 3096 REMARK 465 HIS A 3097 REMARK 465 HIS A 3098 REMARK 465 HIS A 3099 REMARK 465 HIS A 3100 REMARK 465 HIS A 3101 REMARK 465 SER A 3102 REMARK 465 SER A 3103 REMARK 465 GLY A 3104 REMARK 465 LEU A 3105 REMARK 465 VAL A 3106 REMARK 465 PRO A 3107 REMARK 465 ARG A 3108 REMARK 465 GLY A 3109 REMARK 465 SER A 3110 REMARK 465 HIS A 3111 REMARK 465 MET A 3112 REMARK 465 ASN A 3113 REMARK 465 SER A 3114 REMARK 465 ARG A 3115 REMARK 465 GLU A 3116 REMARK 465 GLU A 3483 REMARK 465 SER A 3484 REMARK 465 ASP A 3485 REMARK 465 GLY A 3486 REMARK 465 LYS A 3487 REMARK 465 THR A 3488 REMARK 465 GLU A 3561 REMARK 465 GLU A 3562 REMARK 465 GLY A 3563 REMARK 465 GLU A 3564 REMARK 465 TYR A 3565 REMARK 465 THR A 3566 REMARK 465 PRO A 3567 REMARK 465 SER A 3568 REMARK 465 ASP A 3569 REMARK 465 LEU A 3570 REMARK 465 GLY A 3571 REMARK 465 ASP A 3572 REMARK 465 GLU A 3573 REMARK 465 GLU A 3574 REMARK 465 LEU A 3575 REMARK 465 SER A 3576 REMARK 465 MET A 3577 REMARK 465 GLU A 3578 REMARK 465 GLU A 3579 REMARK 465 LEU A 3580 REMARK 465 GLU A 3581 REMARK 465 ASN A 3582 REMARK 465 ILE A 3583 REMARK 465 LEU A 3584 REMARK 465 GLU A 3585 REMARK 465 TRP A 3586 REMARK 465 ILE A 3587 REMARK 465 MET B 3092 REMARK 465 GLY B 3093 REMARK 465 SER B 3094 REMARK 465 SER B 3095 REMARK 465 HIS B 3096 REMARK 465 HIS B 3097 REMARK 465 HIS B 3098 REMARK 465 HIS B 3099 REMARK 465 HIS B 3100 REMARK 465 HIS B 3101 REMARK 465 SER B 3102 REMARK 465 SER B 3103 REMARK 465 GLY B 3104 REMARK 465 LEU B 3105 REMARK 465 VAL B 3106 REMARK 465 PRO B 3107 REMARK 465 ARG B 3108 REMARK 465 GLY B 3109 REMARK 465 SER B 3110 REMARK 465 HIS B 3111 REMARK 465 MET B 3112 REMARK 465 ASN B 3113 REMARK 465 SER B 3114 REMARK 465 GLU B 3562 REMARK 465 GLY B 3563 REMARK 465 GLU B 3564 REMARK 465 TYR B 3565 REMARK 465 THR B 3566 REMARK 465 PRO B 3567 REMARK 465 SER B 3568 REMARK 465 ASP B 3569 REMARK 465 LEU B 3570 REMARK 465 GLY B 3571 REMARK 465 ASP B 3572 REMARK 465 GLU B 3573 REMARK 465 GLU B 3574 REMARK 465 LEU B 3575 REMARK 465 SER B 3576 REMARK 465 MET B 3577 REMARK 465 GLU B 3578 REMARK 465 GLU B 3579 REMARK 465 LEU B 3580 REMARK 465 GLU B 3581 REMARK 465 ASN B 3582 REMARK 465 ILE B 3583 REMARK 465 LEU B 3584 REMARK 465 GLU B 3585 REMARK 465 TRP B 3586 REMARK 465 ILE B 3587 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 3452 NH1 ARG A 3455 2.07 REMARK 500 NZ LYS B 3208 O THR B 3243 2.10 REMARK 500 OE1 GLU A 3268 NH2 ARG A 3409 2.13 REMARK 500 O GLU A 3452 OG1 THR A 3456 2.17 REMARK 500 OE1 GLU A 3439 NH2 ARG B 3443 2.17 REMARK 500 OE2 GLU B 3307 NE2 GLN B 3402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A3146 78.75 -158.34 REMARK 500 LEU A3195 59.98 -101.31 REMARK 500 ASP A3197 -167.36 -100.72 REMARK 500 HIS A3232 -68.12 -129.63 REMARK 500 ARG A3398 52.61 -115.40 REMARK 500 GLN A3402 179.43 71.54 REMARK 500 GLU A3404 54.57 38.06 REMARK 500 THR A3459 48.99 -100.48 REMARK 500 TRP B3146 76.07 -158.72 REMARK 500 GLU B3184 117.68 -162.89 REMARK 500 LEU B3195 58.11 -103.97 REMARK 500 SER B3213 -113.44 56.24 REMARK 500 HIS B3232 -67.76 -131.67 REMARK 500 ARG B3358 -73.42 -139.29 REMARK 500 HIS B3359 28.54 -77.48 REMARK 500 ARG B3398 51.91 -118.14 REMARK 500 GLN B3402 177.30 72.15 REMARK 500 GLU B3404 58.97 36.85 REMARK 500 THR B3459 51.25 -102.71 REMARK 500 PRO B3465 102.44 -59.13 REMARK 500 ASP B3485 33.17 -98.82 REMARK 500 THR B3488 -145.05 -90.16 REMARK 500 THR B3498 -179.33 -68.58 REMARK 500 REMARK 500 REMARK: NULL DBREF 5M6P A 3113 3587 UNP O30408 TYCB_BREPA 3113 3587 DBREF 5M6P B 3113 3587 UNP O30408 TYCB_BREPA 3113 3587 SEQADV 5M6P MET A 3092 UNP O30408 INITIATING METHIONINE SEQADV 5M6P GLY A 3093 UNP O30408 EXPRESSION TAG SEQADV 5M6P SER A 3094 UNP O30408 EXPRESSION TAG SEQADV 5M6P SER A 3095 UNP O30408 EXPRESSION TAG SEQADV 5M6P HIS A 3096 UNP O30408 EXPRESSION TAG SEQADV 5M6P HIS A 3097 UNP O30408 EXPRESSION TAG SEQADV 5M6P HIS A 3098 UNP O30408 EXPRESSION TAG SEQADV 5M6P HIS A 3099 UNP O30408 EXPRESSION TAG SEQADV 5M6P HIS A 3100 UNP O30408 EXPRESSION TAG SEQADV 5M6P HIS A 3101 UNP O30408 EXPRESSION TAG SEQADV 5M6P SER A 3102 UNP O30408 EXPRESSION TAG SEQADV 5M6P SER A 3103 UNP O30408 EXPRESSION TAG SEQADV 5M6P GLY A 3104 UNP O30408 EXPRESSION TAG SEQADV 5M6P LEU A 3105 UNP O30408 EXPRESSION TAG SEQADV 5M6P VAL A 3106 UNP O30408 EXPRESSION TAG SEQADV 5M6P PRO A 3107 UNP O30408 EXPRESSION TAG SEQADV 5M6P ARG A 3108 UNP O30408 EXPRESSION TAG SEQADV 5M6P GLY A 3109 UNP O30408 EXPRESSION TAG SEQADV 5M6P SER A 3110 UNP O30408 EXPRESSION TAG SEQADV 5M6P HIS A 3111 UNP O30408 EXPRESSION TAG SEQADV 5M6P MET A 3112 UNP O30408 EXPRESSION TAG SEQADV 5M6P MET B 3092 UNP O30408 INITIATING METHIONINE SEQADV 5M6P GLY B 3093 UNP O30408 EXPRESSION TAG SEQADV 5M6P SER B 3094 UNP O30408 EXPRESSION TAG SEQADV 5M6P SER B 3095 UNP O30408 EXPRESSION TAG SEQADV 5M6P HIS B 3096 UNP O30408 EXPRESSION TAG SEQADV 5M6P HIS B 3097 UNP O30408 EXPRESSION TAG SEQADV 5M6P HIS B 3098 UNP O30408 EXPRESSION TAG SEQADV 5M6P HIS B 3099 UNP O30408 EXPRESSION TAG SEQADV 5M6P HIS B 3100 UNP O30408 EXPRESSION TAG SEQADV 5M6P HIS B 3101 UNP O30408 EXPRESSION TAG SEQADV 5M6P SER B 3102 UNP O30408 EXPRESSION TAG SEQADV 5M6P SER B 3103 UNP O30408 EXPRESSION TAG SEQADV 5M6P GLY B 3104 UNP O30408 EXPRESSION TAG SEQADV 5M6P LEU B 3105 UNP O30408 EXPRESSION TAG SEQADV 5M6P VAL B 3106 UNP O30408 EXPRESSION TAG SEQADV 5M6P PRO B 3107 UNP O30408 EXPRESSION TAG SEQADV 5M6P ARG B 3108 UNP O30408 EXPRESSION TAG SEQADV 5M6P GLY B 3109 UNP O30408 EXPRESSION TAG SEQADV 5M6P SER B 3110 UNP O30408 EXPRESSION TAG SEQADV 5M6P HIS B 3111 UNP O30408 EXPRESSION TAG SEQADV 5M6P MET B 3112 UNP O30408 EXPRESSION TAG SEQRES 1 A 496 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 496 LEU VAL PRO ARG GLY SER HIS MET ASN SER ARG GLU SER SEQRES 3 A 496 GLU GLN GLY VAL VAL GLU GLY GLU ILE ALA LEU THR PRO SEQRES 4 A 496 ILE GLN LYS TRP PHE PHE ALA ASN ASN PHE THR ASP ARG SEQRES 5 A 496 HIS HIS TRP ASN GLN ALA VAL MET LEU PHE ARG GLU ASP SEQRES 6 A 496 GLY PHE ASP GLU GLY LEU VAL ARG GLN ALA PHE GLN GLN SEQRES 7 A 496 ILE VAL GLU HIS HIS ASP ALA LEU ARG MET VAL TYR LYS SEQRES 8 A 496 GLN GLU ASP GLY ALA ILE LYS GLN ILE ASN ARG GLY LEU SEQRES 9 A 496 THR ASP GLU ARG PHE ARG PHE TYR SER TYR ASP LEU LYS SEQRES 10 A 496 ASN HIS ALA ASN SER GLU ALA ARG ILE LEU GLU LEU SER SEQRES 11 A 496 ASP GLN ILE GLN SER SER ILE ASP LEU GLU HIS GLY PRO SEQRES 12 A 496 LEU VAL HIS VAL ALA LEU PHE ALA THR LYS ASP GLY ASP SEQRES 13 A 496 HIS LEU LEU VAL ALA ILE HIS HIS LEU VAL VAL ASP GLY SEQRES 14 A 496 VAL SER TRP ARG ILE LEU PHE GLU ASP PHE SER SER ALA SEQRES 15 A 496 TYR SER GLN ALA LEU HIS GLN GLN GLU ILE VAL LEU PRO SEQRES 16 A 496 LYS LYS THR ASP SER PHE LYS ASP TRP ALA ALA GLN LEU SEQRES 17 A 496 GLN LYS TYR ALA ASP SER ASP GLU LEU LEU ARG GLU VAL SEQRES 18 A 496 ALA TYR TRP HIS ASN LEU GLU THR THR THR THR THR ALA SEQRES 19 A 496 ALA LEU PRO THR ASP PHE VAL THR ALA ASP ARG LYS GLN SEQRES 20 A 496 LYS HIS THR ARG THR LEU SER PHE ALA LEU THR VAL PRO SEQRES 21 A 496 GLN THR GLU ASN LEU LEU ARG HIS VAL HIS HIS ALA TYR SEQRES 22 A 496 HIS THR GLU MET ASN ASP LEU LEU LEU THR ALA LEU GLY SEQRES 23 A 496 LEU ALA VAL LYS ASP TRP ALA HIS THR ASN GLY VAL VAL SEQRES 24 A 496 ILE ASN LEU GLU GLY HIS GLY ARG GLU ASP ILE GLN ASN SEQRES 25 A 496 GLU MET ASN VAL THR ARG THR ILE GLY TRP PHE THR SER SEQRES 26 A 496 GLN TYR PRO VAL VAL LEU ASP MET GLU LYS ALA GLU ASP SEQRES 27 A 496 LEU PRO TYR GLN ILE LYS GLN THR LYS GLU ASN LEU ARG SEQRES 28 A 496 ARG ILE PRO LYS LYS GLY ILE GLY TYR GLU ILE LEU ARG SEQRES 29 A 496 THR LEU THR THR SER GLN LEU GLN PRO PRO LEU ALA PHE SEQRES 30 A 496 THR LEU ARG PRO GLU ILE SER PHE ASN TYR LEU GLY GLN SEQRES 31 A 496 PHE GLU SER ASP GLY LYS THR GLY GLY PHE THR PHE SER SEQRES 32 A 496 PRO LEU GLY THR GLY GLN LEU PHE SER PRO GLU SER GLU SEQRES 33 A 496 ARG VAL PHE LEU LEU ASP ILE SER ALA MET ILE GLU ASP SEQRES 34 A 496 GLY GLU LEU ARG ILE SER VAL GLY TYR SER ARG LEU GLN SEQRES 35 A 496 TYR GLU GLU LYS THR ILE ALA SER LEU ALA ASP SER TYR SEQRES 36 A 496 ARG LYS HIS LEU LEU GLY ILE ILE GLU HIS CYS MET ALA SEQRES 37 A 496 LYS GLU GLU GLY GLU TYR THR PRO SER ASP LEU GLY ASP SEQRES 38 A 496 GLU GLU LEU SER MET GLU GLU LEU GLU ASN ILE LEU GLU SEQRES 39 A 496 TRP ILE SEQRES 1 B 496 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 496 LEU VAL PRO ARG GLY SER HIS MET ASN SER ARG GLU SER SEQRES 3 B 496 GLU GLN GLY VAL VAL GLU GLY GLU ILE ALA LEU THR PRO SEQRES 4 B 496 ILE GLN LYS TRP PHE PHE ALA ASN ASN PHE THR ASP ARG SEQRES 5 B 496 HIS HIS TRP ASN GLN ALA VAL MET LEU PHE ARG GLU ASP SEQRES 6 B 496 GLY PHE ASP GLU GLY LEU VAL ARG GLN ALA PHE GLN GLN SEQRES 7 B 496 ILE VAL GLU HIS HIS ASP ALA LEU ARG MET VAL TYR LYS SEQRES 8 B 496 GLN GLU ASP GLY ALA ILE LYS GLN ILE ASN ARG GLY LEU SEQRES 9 B 496 THR ASP GLU ARG PHE ARG PHE TYR SER TYR ASP LEU LYS SEQRES 10 B 496 ASN HIS ALA ASN SER GLU ALA ARG ILE LEU GLU LEU SER SEQRES 11 B 496 ASP GLN ILE GLN SER SER ILE ASP LEU GLU HIS GLY PRO SEQRES 12 B 496 LEU VAL HIS VAL ALA LEU PHE ALA THR LYS ASP GLY ASP SEQRES 13 B 496 HIS LEU LEU VAL ALA ILE HIS HIS LEU VAL VAL ASP GLY SEQRES 14 B 496 VAL SER TRP ARG ILE LEU PHE GLU ASP PHE SER SER ALA SEQRES 15 B 496 TYR SER GLN ALA LEU HIS GLN GLN GLU ILE VAL LEU PRO SEQRES 16 B 496 LYS LYS THR ASP SER PHE LYS ASP TRP ALA ALA GLN LEU SEQRES 17 B 496 GLN LYS TYR ALA ASP SER ASP GLU LEU LEU ARG GLU VAL SEQRES 18 B 496 ALA TYR TRP HIS ASN LEU GLU THR THR THR THR THR ALA SEQRES 19 B 496 ALA LEU PRO THR ASP PHE VAL THR ALA ASP ARG LYS GLN SEQRES 20 B 496 LYS HIS THR ARG THR LEU SER PHE ALA LEU THR VAL PRO SEQRES 21 B 496 GLN THR GLU ASN LEU LEU ARG HIS VAL HIS HIS ALA TYR SEQRES 22 B 496 HIS THR GLU MET ASN ASP LEU LEU LEU THR ALA LEU GLY SEQRES 23 B 496 LEU ALA VAL LYS ASP TRP ALA HIS THR ASN GLY VAL VAL SEQRES 24 B 496 ILE ASN LEU GLU GLY HIS GLY ARG GLU ASP ILE GLN ASN SEQRES 25 B 496 GLU MET ASN VAL THR ARG THR ILE GLY TRP PHE THR SER SEQRES 26 B 496 GLN TYR PRO VAL VAL LEU ASP MET GLU LYS ALA GLU ASP SEQRES 27 B 496 LEU PRO TYR GLN ILE LYS GLN THR LYS GLU ASN LEU ARG SEQRES 28 B 496 ARG ILE PRO LYS LYS GLY ILE GLY TYR GLU ILE LEU ARG SEQRES 29 B 496 THR LEU THR THR SER GLN LEU GLN PRO PRO LEU ALA PHE SEQRES 30 B 496 THR LEU ARG PRO GLU ILE SER PHE ASN TYR LEU GLY GLN SEQRES 31 B 496 PHE GLU SER ASP GLY LYS THR GLY GLY PHE THR PHE SER SEQRES 32 B 496 PRO LEU GLY THR GLY GLN LEU PHE SER PRO GLU SER GLU SEQRES 33 B 496 ARG VAL PHE LEU LEU ASP ILE SER ALA MET ILE GLU ASP SEQRES 34 B 496 GLY GLU LEU ARG ILE SER VAL GLY TYR SER ARG LEU GLN SEQRES 35 B 496 TYR GLU GLU LYS THR ILE ALA SER LEU ALA ASP SER TYR SEQRES 36 B 496 ARG LYS HIS LEU LEU GLY ILE ILE GLU HIS CYS MET ALA SEQRES 37 B 496 LYS GLU GLU GLY GLU TYR THR PRO SER ASP LEU GLY ASP SEQRES 38 B 496 GLU GLU LEU SER MET GLU GLU LEU GLU ASN ILE LEU GLU SEQRES 39 B 496 TRP ILE HELIX 1 AA1 THR A 3129 ASN A 3138 1 10 HELIX 2 AA2 ASP A 3159 HIS A 3174 1 16 HELIX 3 AA3 ASP A 3175 LEU A 3177 5 3 HELIX 4 AA4 ASN A 3212 SER A 3226 1 15 HELIX 5 AA5 LEU A 3256 VAL A 3258 5 3 HELIX 6 AA6 ASP A 3259 HIS A 3279 1 21 HELIX 7 AA7 SER A 3291 ASP A 3304 1 14 HELIX 8 AA8 GLU A 3311 THR A 3322 1 12 HELIX 9 AA9 LYS A 3337 LYS A 3339 5 3 HELIX 10 AB1 THR A 3349 HIS A 3359 1 11 HELIX 11 AB2 VAL A 3360 TYR A 3364 5 5 HELIX 12 AB3 GLU A 3367 HIS A 3385 1 19 HELIX 13 AB4 ASP A 3429 ARG A 3443 1 15 HELIX 14 AB5 ILE A 3444 GLY A 3448 5 5 HELIX 15 AB6 ILE A 3449 LEU A 3457 1 9 HELIX 16 AB7 GLU A 3535 MET A 3558 1 24 HELIX 17 AB8 THR B 3129 ASN B 3138 1 10 HELIX 18 AB9 ASP B 3159 HIS B 3174 1 16 HELIX 19 AC1 ASP B 3175 LEU B 3177 5 3 HELIX 20 AC2 SER B 3213 SER B 3226 1 14 HELIX 21 AC3 LEU B 3256 VAL B 3258 5 3 HELIX 22 AC4 ASP B 3259 HIS B 3279 1 21 HELIX 23 AC5 SER B 3291 ASP B 3304 1 14 HELIX 24 AC6 GLU B 3311 THR B 3322 1 12 HELIX 25 AC7 LYS B 3337 LYS B 3339 5 3 HELIX 26 AC8 THR B 3349 ARG B 3358 1 10 HELIX 27 AC9 GLU B 3367 HIS B 3385 1 19 HELIX 28 AD1 ASP B 3429 ARG B 3443 1 15 HELIX 29 AD2 ILE B 3444 GLY B 3448 5 5 HELIX 30 AD3 ILE B 3449 LEU B 3457 1 9 HELIX 31 AD4 GLU B 3535 MET B 3558 1 24 SHEET 1 AA1 3 GLY A3124 ILE A3126 0 SHEET 2 AA1 3 ALA A3187 ASN A3192 -1 O ASN A3192 N GLY A3124 SHEET 3 AA1 3 MET A3179 GLU A3184 -1 N LYS A3182 O LYS A3189 SHEET 1 AA2 5 ARG A3201 ASP A3206 0 SHEET 2 AA2 5 VAL A3236 ALA A3242 1 O LEU A3240 N TYR A3205 SHEET 3 AA2 5 ASP A3247 HIS A3254 -1 O HIS A3248 N PHE A3241 SHEET 4 AA2 5 ASN A3147 ARG A3154 -1 N LEU A3152 O LEU A3249 SHEET 5 AA2 5 THR A3492 PHE A3493 -1 O THR A3492 N PHE A3153 SHEET 1 AA3 6 THR A3341 ALA A3347 0 SHEET 2 AA3 6 GLU A3522 SER A3530 -1 O TYR A3529 N ARG A3342 SHEET 3 AA3 6 LEU A3512 GLU A3519 -1 N ASP A3513 O GLY A3528 SHEET 4 AA3 6 ILE A3474 GLN A3481 1 N LEU A3479 O ALA A3516 SHEET 5 AA3 6 GLY A3388 GLY A3395 1 N ASN A3392 O ILE A3474 SHEET 6 AA3 6 SER A3416 ASP A3423 -1 O VAL A3420 N ILE A3391 SHEET 1 AA4 3 GLY B3124 ILE B3126 0 SHEET 2 AA4 3 ALA B3187 ASN B3192 -1 O ASN B3192 N GLY B3124 SHEET 3 AA4 3 MET B3179 GLU B3184 -1 N LYS B3182 O LYS B3189 SHEET 1 AA5 5 ARG B3201 ASP B3206 0 SHEET 2 AA5 5 VAL B3236 ALA B3242 1 O LEU B3240 N TYR B3203 SHEET 3 AA5 5 HIS B3248 HIS B3254 -1 O HIS B3248 N PHE B3241 SHEET 4 AA5 5 ASN B3147 PHE B3153 -1 N LEU B3152 O LEU B3249 SHEET 5 AA5 5 THR B3492 PHE B3493 -1 O THR B3492 N PHE B3153 SHEET 1 AA6 6 THR B3341 ALA B3347 0 SHEET 2 AA6 6 GLU B3522 SER B3530 -1 O ILE B3525 N PHE B3346 SHEET 3 AA6 6 LEU B3512 GLU B3519 -1 N ASP B3513 O GLY B3528 SHEET 4 AA6 6 ILE B3474 PHE B3482 1 N LEU B3479 O ALA B3516 SHEET 5 AA6 6 GLY B3388 GLY B3395 1 N ASN B3392 O ILE B3474 SHEET 6 AA6 6 SER B3416 ASP B3423 -1 O SER B3416 N GLY B3395 CRYST1 120.846 120.846 256.379 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008275 0.004778 0.000000 0.00000 SCALE2 0.000000 0.009555 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003900 0.00000