HEADER SIGNALING PROTEIN 28-OCT-16 5M7N TITLE CRYSTAL STRUCTURE OF NTRX FROM BRUCELLA ABORTUS IN COMPLEX WITH ATP TITLE 2 PROCESSED WITH THE CRYSTALDIRECT AUTOMATED MOUNTING AND CRYO-COOLING TITLE 3 TECHNOLOGY COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITROGEN ASSIMILATION REGULATORY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE MISSING RESIDUES WERE NOT CLEARLY VISIBLE IN THE COMPND 6 ELECTRON DENSITY, THUS NOT MODELED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA ABORTUS STR. 2308 A; SOURCE 3 ORGANISM_TAXID: 641140; SOURCE 4 GENE: BAAA_2000042; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS CRYSTALDIRECT, SIGNALING PROTEIN, BRUCELLOSIS, TWO-COMPONENT SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR I.CORNACIU,I.FERNANDEZ,G.HOFFMANN,M.C.CARRICA,F.A.GOLDBAUM, AUTHOR 2 J.A.MARQUEZ REVDAT 3 26-APR-17 5M7N 1 JRNL REVDAT 2 08-FEB-17 5M7N 1 REMARK REVDAT 1 25-JAN-17 5M7N 0 JRNL AUTH I.FERNANDEZ,I.CORNACIU,M.D.CARRICA,E.UCHIKAWA,G.HOFFMANN, JRNL AUTH 2 R.SIEIRA,J.A.MARQUEZ,F.A.GOLDBAUM JRNL TITL THREE-DIMENSIONAL STRUCTURE OF FULL-LENGTH NTRX, AN UNUSUAL JRNL TITL 2 MEMBER OF THE NTRC FAMILY OF RESPONSE REGULATORS. JRNL REF J. MOL. BIOL. V. 429 1192 2017 JRNL REFN ESSN 1089-8638 JRNL PMID 28088479 JRNL DOI 10.1016/J.JMB.2016.12.022 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28148 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1443 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.01 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2926 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2690 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2779 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.02 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6615 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 76.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.91500 REMARK 3 B22 (A**2) : 10.60440 REMARK 3 B33 (A**2) : -19.51950 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.380 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 1.382 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.331 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 1.485 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.338 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.913 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6770 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9181 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2411 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 170 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1017 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6770 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 925 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8007 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.14 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.56 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.59 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -39.3456 30.5273 -16.2439 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -28.3337 24.4971 -7.4876 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5M7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200002053. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9660 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28263 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.18100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.36 M SODIUM FORMATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.85100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.85100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.43350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 95.80550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.43350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 95.80550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.85100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.43350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 95.80550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.85100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.43350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 95.80550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 LYS A 134 REMARK 465 ARG A 135 REMARK 465 THR A 136 REMARK 465 GLY A 137 REMARK 465 ASP A 138 REMARK 465 GLN A 139 REMARK 465 ASP A 217 REMARK 465 GLY A 218 REMARK 465 GLY A 219 REMARK 465 GLU A 220 REMARK 465 ARG A 221 REMARK 465 GLY B 0 REMARK 465 GLN B 57 REMARK 465 GLY B 58 REMARK 465 SER B 59 REMARK 465 ARG B 60 REMARK 465 LEU B 61 REMARK 465 ASP B 62 REMARK 465 ASP B 138 REMARK 465 GLN B 139 REMARK 465 LEU B 140 REMARK 465 ASP B 217 REMARK 465 GLY B 218 REMARK 465 GLY B 219 REMARK 465 GLY B 388 REMARK 465 ASP B 389 REMARK 465 THR B 390 REMARK 465 LEU B 391 REMARK 465 PRO B 392 REMARK 465 ARG B 393 REMARK 465 ALA B 394 REMARK 465 PRO B 395 REMARK 465 THR B 396 REMARK 465 GLU B 397 REMARK 465 SER B 398 REMARK 465 ASP B 399 REMARK 465 GLN B 400 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 ASP A 13 CG OD1 OD2 REMARK 470 ARG A 60 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 HIS A 85 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 ARG A 96 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 ARG A 111 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 140 CG CD1 CD2 REMARK 470 ARG A 206 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 215 CG CD OE1 OE2 REMARK 470 MET A 216 CG SD CE REMARK 470 LYS A 334 CG CD CE NZ REMARK 470 LYS A 337 CG CD CE NZ REMARK 470 GLU A 397 CG CD OE1 OE2 REMARK 470 SER A 398 OG REMARK 470 GLN A 400 CG CD OE1 NE2 REMARK 470 MET B 1 CG SD CE REMARK 470 ASP B 13 CG OD1 OD2 REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 GLN B 73 CG CD OE1 NE2 REMARK 470 ILE B 88 CG1 CG2 CD1 REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 ARG B 111 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 151 CG CD OE1 NE2 REMARK 470 GLU B 215 CG CD OE1 OE2 REMARK 470 MET B 216 CG SD CE REMARK 470 GLU B 220 CG CD OE1 OE2 REMARK 470 ARG B 244 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 249 CG CD CE NZ REMARK 470 ARG B 252 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 288 CG CD OE1 OE2 REMARK 470 LYS B 334 CG CD CE NZ REMARK 470 LYS B 337 CG CD CE NZ REMARK 470 ASP B 373 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 45 138.43 -177.56 REMARK 500 TRP A 55 -62.57 -93.20 REMARK 500 GLU A 238 63.37 71.79 REMARK 500 ALA A 240 -9.97 -59.80 REMARK 500 ARG A 312 44.81 -152.22 REMARK 500 ASN A 354 -133.69 43.54 REMARK 500 ILE A 387 -62.04 -90.23 REMARK 500 ARG B 45 135.38 -171.27 REMARK 500 GLU B 238 73.61 56.53 REMARK 500 VAL B 301 -84.13 -91.88 REMARK 500 ARG B 312 45.11 -147.74 REMARK 500 ASN B 354 -124.96 46.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 9 OD1 REMARK 620 2 ASP A 10 OD1 88.7 REMARK 620 3 HOH A 643 O 140.2 83.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 9 OD1 REMARK 620 2 ASP B 53 OD2 71.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP B 502 DBREF 5M7N A 1 453 UNP C4IRH0 C4IRH0_BRUAO 1 453 DBREF 5M7N B 1 453 UNP C4IRH0 C4IRH0_BRUAO 1 453 SEQADV 5M7N GLY A 0 UNP C4IRH0 EXPRESSION TAG SEQADV 5M7N GLY B 0 UNP C4IRH0 EXPRESSION TAG SEQRES 1 A 454 GLY MET ALA ALA ASP ILE LEU VAL VAL ASP ASP GLU VAL SEQRES 2 A 454 ASP ILE ARG ASP LEU VAL ALA GLY ILE LEU SER ASP GLU SEQRES 3 A 454 GLY HIS GLU THR ARG THR ALA PHE ASP ALA ASP SER ALA SEQRES 4 A 454 LEU ALA ALA ILE ASN ASP ARG ALA PRO ARG LEU VAL PHE SEQRES 5 A 454 LEU ASP ILE TRP LEU GLN GLY SER ARG LEU ASP GLY LEU SEQRES 6 A 454 ALA LEU LEU ASP GLU ILE LYS LYS GLN HIS PRO GLU LEU SEQRES 7 A 454 PRO VAL VAL MET ILE SER GLY HIS GLY ASN ILE GLU THR SEQRES 8 A 454 ALA VAL SER ALA ILE ARG ARG GLY ALA TYR ASP PHE ILE SEQRES 9 A 454 GLU LYS PRO PHE LYS ALA ASP ARG LEU ILE LEU VAL ALA SEQRES 10 A 454 GLU ARG ALA LEU GLU THR SER LYS LEU LYS ARG GLU VAL SEQRES 11 A 454 SER ASP LEU ARG LYS ARG THR GLY ASP GLN LEU GLU LEU SEQRES 12 A 454 VAL GLY THR SER LEU ALA MET ASN GLN LEU ARG GLN THR SEQRES 13 A 454 ILE GLU ARG VAL ALA PRO THR ASN SER ARG ILE MET ILE SEQRES 14 A 454 THR GLY PRO SER GLY ALA GLY LYS GLU LEU VAL ALA ARG SEQRES 15 A 454 ALA ILE HIS ALA GLN SER SER ARG ALA ASN GLY PRO PHE SEQRES 16 A 454 VAL THR VAL ASN ALA ALA THR ILE THR PRO GLU ARG MET SEQRES 17 A 454 GLU ILE GLU LEU PHE GLY THR GLU MET ASP GLY GLY GLU SEQRES 18 A 454 ARG LYS VAL GLY ALA LEU GLU GLU ALA HIS GLY GLY ILE SEQRES 19 A 454 LEU TYR LEU ASP GLU VAL ALA ASP MET PRO ARG GLU THR SEQRES 20 A 454 GLN ASN LYS ILE LEU ARG VAL LEU VAL ASP GLN GLN PHE SEQRES 21 A 454 GLU ARG VAL GLY GLY THR LYS ARG VAL LYS VAL ASP VAL SEQRES 22 A 454 ARG ILE ILE SER SER THR ALA GLN ASN LEU GLU GLY MET SEQRES 23 A 454 ILE ALA GLU GLY THR PHE ARG GLU ASP LEU PHE HIS ARG SEQRES 24 A 454 LEU SER VAL VAL PRO VAL GLN VAL PRO ALA LEU ALA ALA SEQRES 25 A 454 ARG ARG GLU ASP ILE PRO SER LEU VAL GLU PHE PHE MET SEQRES 26 A 454 LYS GLN ILE ALA GLU GLN ALA GLY ILE LYS PRO ARG LYS SEQRES 27 A 454 ILE GLY PRO ASP ALA MET ALA VAL LEU GLN ALA HIS SER SEQRES 28 A 454 TRP PRO GLY ASN LEU ARG GLN LEU ARG ASN ASN VAL GLU SEQRES 29 A 454 ARG LEU MET ILE LEU THR ARG GLY ASP ASP PRO ASP GLU SEQRES 30 A 454 LEU VAL THR ALA ASP LEU LEU PRO ALA GLU ILE GLY ASP SEQRES 31 A 454 THR LEU PRO ARG ALA PRO THR GLU SER ASP GLN HIS ILE SEQRES 32 A 454 MET ALA LEU PRO LEU ARG GLU ALA ARG GLU ARG PHE GLU SEQRES 33 A 454 LYS GLU TYR LEU ILE ALA GLN ILE ASN ARG PHE GLY GLY SEQRES 34 A 454 ASN ILE SER ARG THR ALA GLU PHE VAL GLY MET GLU ARG SEQRES 35 A 454 SER ALA LEU HIS ARG LYS LEU LYS SER LEU GLY VAL SEQRES 1 B 454 GLY MET ALA ALA ASP ILE LEU VAL VAL ASP ASP GLU VAL SEQRES 2 B 454 ASP ILE ARG ASP LEU VAL ALA GLY ILE LEU SER ASP GLU SEQRES 3 B 454 GLY HIS GLU THR ARG THR ALA PHE ASP ALA ASP SER ALA SEQRES 4 B 454 LEU ALA ALA ILE ASN ASP ARG ALA PRO ARG LEU VAL PHE SEQRES 5 B 454 LEU ASP ILE TRP LEU GLN GLY SER ARG LEU ASP GLY LEU SEQRES 6 B 454 ALA LEU LEU ASP GLU ILE LYS LYS GLN HIS PRO GLU LEU SEQRES 7 B 454 PRO VAL VAL MET ILE SER GLY HIS GLY ASN ILE GLU THR SEQRES 8 B 454 ALA VAL SER ALA ILE ARG ARG GLY ALA TYR ASP PHE ILE SEQRES 9 B 454 GLU LYS PRO PHE LYS ALA ASP ARG LEU ILE LEU VAL ALA SEQRES 10 B 454 GLU ARG ALA LEU GLU THR SER LYS LEU LYS ARG GLU VAL SEQRES 11 B 454 SER ASP LEU ARG LYS ARG THR GLY ASP GLN LEU GLU LEU SEQRES 12 B 454 VAL GLY THR SER LEU ALA MET ASN GLN LEU ARG GLN THR SEQRES 13 B 454 ILE GLU ARG VAL ALA PRO THR ASN SER ARG ILE MET ILE SEQRES 14 B 454 THR GLY PRO SER GLY ALA GLY LYS GLU LEU VAL ALA ARG SEQRES 15 B 454 ALA ILE HIS ALA GLN SER SER ARG ALA ASN GLY PRO PHE SEQRES 16 B 454 VAL THR VAL ASN ALA ALA THR ILE THR PRO GLU ARG MET SEQRES 17 B 454 GLU ILE GLU LEU PHE GLY THR GLU MET ASP GLY GLY GLU SEQRES 18 B 454 ARG LYS VAL GLY ALA LEU GLU GLU ALA HIS GLY GLY ILE SEQRES 19 B 454 LEU TYR LEU ASP GLU VAL ALA ASP MET PRO ARG GLU THR SEQRES 20 B 454 GLN ASN LYS ILE LEU ARG VAL LEU VAL ASP GLN GLN PHE SEQRES 21 B 454 GLU ARG VAL GLY GLY THR LYS ARG VAL LYS VAL ASP VAL SEQRES 22 B 454 ARG ILE ILE SER SER THR ALA GLN ASN LEU GLU GLY MET SEQRES 23 B 454 ILE ALA GLU GLY THR PHE ARG GLU ASP LEU PHE HIS ARG SEQRES 24 B 454 LEU SER VAL VAL PRO VAL GLN VAL PRO ALA LEU ALA ALA SEQRES 25 B 454 ARG ARG GLU ASP ILE PRO SER LEU VAL GLU PHE PHE MET SEQRES 26 B 454 LYS GLN ILE ALA GLU GLN ALA GLY ILE LYS PRO ARG LYS SEQRES 27 B 454 ILE GLY PRO ASP ALA MET ALA VAL LEU GLN ALA HIS SER SEQRES 28 B 454 TRP PRO GLY ASN LEU ARG GLN LEU ARG ASN ASN VAL GLU SEQRES 29 B 454 ARG LEU MET ILE LEU THR ARG GLY ASP ASP PRO ASP GLU SEQRES 30 B 454 LEU VAL THR ALA ASP LEU LEU PRO ALA GLU ILE GLY ASP SEQRES 31 B 454 THR LEU PRO ARG ALA PRO THR GLU SER ASP GLN HIS ILE SEQRES 32 B 454 MET ALA LEU PRO LEU ARG GLU ALA ARG GLU ARG PHE GLU SEQRES 33 B 454 LYS GLU TYR LEU ILE ALA GLN ILE ASN ARG PHE GLY GLY SEQRES 34 B 454 ASN ILE SER ARG THR ALA GLU PHE VAL GLY MET GLU ARG SEQRES 35 B 454 SER ALA LEU HIS ARG LYS LEU LYS SER LEU GLY VAL HET MG A 501 1 HET ATP A 502 31 HET MG B 501 1 HET ATP B 502 31 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 ATP 2(C10 H16 N5 O13 P3) FORMUL 7 HOH *98(H2 O) HELIX 1 AA1 GLU A 11 GLU A 25 1 15 HELIX 2 AA2 ASP A 34 ARG A 45 1 12 HELIX 3 AA3 ASP A 62 HIS A 74 1 13 HELIX 4 AA4 ILE A 88 ARG A 97 1 10 HELIX 5 AA5 LYS A 108 ARG A 133 1 26 HELIX 6 AA6 SER A 146 ALA A 160 1 15 HELIX 7 AA7 GLY A 175 SER A 187 1 13 HELIX 8 AA8 THR A 203 GLU A 205 5 3 HELIX 9 AA9 ARG A 206 GLY A 213 1 8 HELIX 10 AB1 GLY A 224 ALA A 229 1 6 HELIX 11 AB2 VAL A 239 MET A 242 5 4 HELIX 12 AB3 PRO A 243 GLN A 257 1 15 HELIX 13 AB4 ASN A 281 GLU A 288 1 8 HELIX 14 AB5 ARG A 292 SER A 300 1 9 HELIX 15 AB6 ALA A 308 GLU A 314 5 7 HELIX 16 AB7 ASP A 315 GLY A 332 1 18 HELIX 17 AB8 GLY A 339 HIS A 349 1 11 HELIX 18 AB9 GLY A 353 THR A 369 1 17 HELIX 19 AC1 THR A 379 LEU A 383 5 5 HELIX 20 AC2 PRO A 384 ASP A 389 1 6 HELIX 21 AC3 ASP A 399 ALA A 404 1 6 HELIX 22 AC4 PRO A 406 PHE A 426 1 21 HELIX 23 AC5 ASN A 429 GLY A 438 1 10 HELIX 24 AC6 GLU A 440 GLY A 452 1 13 HELIX 25 AC7 GLU B 11 ASP B 24 1 14 HELIX 26 AC8 ASP B 34 ARG B 45 1 12 HELIX 27 AC9 LEU B 64 HIS B 74 1 11 HELIX 28 AD1 ASN B 87 ARG B 97 1 11 HELIX 29 AD2 LYS B 108 THR B 136 1 29 HELIX 30 AD3 SER B 146 ALA B 160 1 15 HELIX 31 AD4 GLY B 175 GLN B 186 1 12 HELIX 32 AD5 ALA B 200 ILE B 202 5 3 HELIX 33 AD6 THR B 203 GLU B 205 5 3 HELIX 34 AD7 ARG B 206 GLY B 213 1 8 HELIX 35 AD8 GLY B 224 ALA B 229 1 6 HELIX 36 AD9 VAL B 239 MET B 242 5 4 HELIX 37 AE1 PRO B 243 GLN B 257 1 15 HELIX 38 AE2 ASN B 281 GLU B 288 1 8 HELIX 39 AE3 ARG B 292 SER B 300 1 9 HELIX 40 AE4 ALA B 308 GLU B 314 5 7 HELIX 41 AE5 ASP B 315 GLY B 332 1 18 HELIX 42 AE6 GLY B 339 HIS B 349 1 11 HELIX 43 AE7 GLY B 353 ARG B 370 1 18 HELIX 44 AE8 THR B 379 LEU B 383 5 5 HELIX 45 AE9 HIS B 401 LEU B 405 5 5 HELIX 46 AF1 PRO B 406 PHE B 426 1 21 HELIX 47 AF2 ASN B 429 GLY B 438 1 10 HELIX 48 AF3 GLU B 440 GLY B 452 1 13 SHEET 1 AA1 5 GLU A 28 ALA A 32 0 SHEET 2 AA1 5 ASP A 4 VAL A 8 1 N VAL A 7 O ARG A 30 SHEET 3 AA1 5 LEU A 49 ASP A 53 1 O PHE A 51 N VAL A 8 SHEET 4 AA1 5 VAL A 79 GLY A 84 1 O VAL A 80 N VAL A 50 SHEET 5 AA1 5 ASP A 101 LYS A 105 1 O ILE A 103 N MET A 81 SHEET 1 AA2 5 PHE A 194 ASN A 198 0 SHEET 2 AA2 5 ILE A 233 ASP A 237 1 O TYR A 235 N VAL A 195 SHEET 3 AA2 5 ARG A 273 THR A 278 1 O ILE A 275 N LEU A 234 SHEET 4 AA2 5 ILE A 166 THR A 169 1 N ILE A 168 O SER A 276 SHEET 5 AA2 5 VAL A 302 GLN A 305 1 O VAL A 304 N MET A 167 SHEET 1 AA3 2 GLN A 258 GLU A 260 0 SHEET 2 AA3 2 ARG A 267 LYS A 269 -1 O VAL A 268 N PHE A 259 SHEET 1 AA4 5 GLU B 28 ALA B 32 0 SHEET 2 AA4 5 ASP B 4 VAL B 8 1 N ILE B 5 O GLU B 28 SHEET 3 AA4 5 LEU B 49 ASP B 53 1 O PHE B 51 N VAL B 8 SHEET 4 AA4 5 VAL B 79 SER B 83 1 O VAL B 80 N VAL B 50 SHEET 5 AA4 5 ASP B 101 GLU B 104 1 O ILE B 103 N MET B 81 SHEET 1 AA5 5 PHE B 194 ASN B 198 0 SHEET 2 AA5 5 ILE B 233 ASP B 237 1 O TYR B 235 N VAL B 195 SHEET 3 AA5 5 ARG B 273 THR B 278 1 O ILE B 275 N LEU B 236 SHEET 4 AA5 5 ILE B 166 THR B 169 1 N ILE B 168 O SER B 276 SHEET 5 AA5 5 VAL B 302 GLN B 305 1 O VAL B 304 N THR B 169 SHEET 1 AA6 2 GLN B 258 GLU B 260 0 SHEET 2 AA6 2 ARG B 267 LYS B 269 -1 O VAL B 268 N PHE B 259 LINK OD1 ASP A 9 MG MG A 501 1555 1555 2.36 LINK OD1 ASP A 10 MG MG A 501 1555 1555 2.09 LINK OD1 ASP B 9 MG MG B 501 1555 1555 2.39 LINK OD2 ASP B 53 MG MG B 501 1555 1555 2.36 LINK MG MG A 501 O HOH A 643 1555 1555 2.79 CISPEP 1 LYS A 105 PRO A 106 0 -1.06 CISPEP 2 LYS B 105 PRO B 106 0 -3.94 SITE 1 AC1 4 ASP A 9 ASP A 10 ASP A 53 HOH A 643 SITE 1 AC2 14 LEU A 142 VAL A 143 MET A 149 GLY A 173 SITE 2 AC2 14 ALA A 174 GLY A 175 LYS A 176 GLU A 177 SITE 3 AC2 14 LEU A 178 LEU A 319 LEU A 355 ARG A 356 SITE 4 AC2 14 ALA B 331 ARG B 370 SITE 1 AC3 4 ASP B 9 ASP B 10 ASP B 53 LYS B 105 SITE 1 AC4 15 ALA A 331 ARG A 370 LEU B 142 VAL B 143 SITE 2 AC4 15 MET B 149 GLY B 173 ALA B 174 GLY B 175 SITE 3 AC4 15 LYS B 176 GLU B 177 LEU B 178 LEU B 355 SITE 4 AC4 15 ARG B 356 ARG B 359 HOH B 615 CRYST1 116.867 191.611 111.702 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008557 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008952 0.00000