HEADER TRANSFERASE 28-OCT-16 5M82 TITLE THREE-DIMENSIONAL STRUCTURE OF THE PHOTOPRODUCT STATE OF GAF3 FROM TITLE 2 SLR1393 OF SYNECHOCYSTIS SP. PCC6803 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSORY TRANSDUCTION HISTIDINE KINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803 SUBSTR. KAZUSA; SOURCE 3 ORGANISM_TAXID: 1111708; SOURCE 4 GENE: SLR1393; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CYANOBACTERIOCHROME, PHYCOCYANOBILIN CHROMOPHORE, PHOTOCHROMICITY, KEYWDS 2 BILIN-BINDING GAF DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.-L.XU,K.-H.ZHAO,W.GAERTNER,A.HOEPPNER REVDAT 4 13-NOV-24 5M82 1 REMARK REVDAT 3 17-JAN-24 5M82 1 REMARK REVDAT 2 29-JAN-20 5M82 1 JRNL REVDAT 1 20-DEC-17 5M82 0 JRNL AUTH X.-L.XU,A.HOEPPNER,C.WIEBELER,K.-H.ZHAO,I.SCHAPIRO, JRNL AUTH 2 W.GAERTNER JRNL TITL STRUCTURAL ELEMENTS REGULATING THE PHOTOCHROMICITY IN A JRNL TITL 2 CYANOBACTERIOCHROME JRNL REF PROC.NATL.ACAD.SCI.USA 2020 JRNL REFN ESSN 1091-6490 JRNL DOI 10.1073/PNAS.1910208117 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 17263 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 921 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 788 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1304 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -1.71000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.398 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1405 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1289 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1914 ; 2.376 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2933 ; 1.480 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 159 ; 6.737 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;34.767 ;23.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 211 ;12.798 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.857 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 195 ; 0.144 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1627 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 379 ; 0.020 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 633 ; 3.492 ; 3.532 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 632 ; 3.490 ; 3.523 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 790 ; 4.394 ; 5.272 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 791 ; 4.393 ; 5.282 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 772 ; 4.414 ; 3.993 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 773 ; 4.411 ; 3.992 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1124 ; 6.544 ; 5.825 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1650 ; 8.030 ;29.104 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1633 ; 8.055 ;29.060 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5M82 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200001738. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976252 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : KB MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18191 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 65.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 3.890 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.02700 REMARK 200 FOR THE DATA SET : 25.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.07 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5M85 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NACL, 0.1 M CAPSO PH 9.5, 0.175 REMARK 280 M LISO4, 14% PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.58667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.79333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.69000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 11.89667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.48333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393 REMARK 465 HIS A 394 REMARK 465 HIS A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 SER A 398 REMARK 465 SER A 399 REMARK 465 GLY A 400 REMARK 465 LEU A 401 REMARK 465 VAL A 402 REMARK 465 PRO A 403 REMARK 465 ARG A 404 REMARK 465 GLY A 405 REMARK 465 SER A 406 REMARK 465 GLY A 407 REMARK 465 MET A 408 REMARK 465 LYS A 409 REMARK 465 GLU A 410 REMARK 465 THR A 411 REMARK 465 ALA A 412 REMARK 465 ALA A 413 REMARK 465 ALA A 414 REMARK 465 LYS A 415 REMARK 465 PHE A 416 REMARK 465 GLU A 417 REMARK 465 ARG A 418 REMARK 465 GLN A 419 REMARK 465 HIS A 420 REMARK 465 MET A 421 REMARK 465 ASP A 422 REMARK 465 SER A 423 REMARK 465 PRO A 424 REMARK 465 ASP A 425 REMARK 465 LEU A 426 REMARK 465 GLY A 427 REMARK 465 THR A 428 REMARK 465 ASP A 429 REMARK 465 ASP A 430 REMARK 465 ASP A 431 REMARK 465 ASP A 432 REMARK 465 LYS A 433 REMARK 465 ALA A 434 REMARK 465 MET A 435 REMARK 465 ALA A 436 REMARK 465 ASP A 437 REMARK 465 ILE A 438 REMARK 465 GLY A 439 REMARK 465 LEU A 598 REMARK 465 GLU A 599 REMARK 465 HIS A 600 REMARK 465 HIS A 601 REMARK 465 HIS A 602 REMARK 465 HIS A 603 REMARK 465 HIS A 604 REMARK 465 HIS A 605 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 528 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 535 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 457 65.49 33.43 REMARK 500 GLU A 505 49.41 37.50 REMARK 500 GLU A 537 29.09 46.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 705 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 526 OG1 REMARK 620 2 HOH A 854 O 109.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 703 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 543 OG1 REMARK 620 2 TYR A 559 OH 104.5 REMARK 620 3 HOH A 823 O 105.0 118.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYC A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3CX A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 705 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5DFY RELATED DB: PDB DBREF 5M82 A 441 597 UNP P73184 P73184_SYNY3 441 597 SEQADV 5M82 MET A 391 UNP P73184 INITIATING METHIONINE SEQADV 5M82 HIS A 392 UNP P73184 EXPRESSION TAG SEQADV 5M82 HIS A 393 UNP P73184 EXPRESSION TAG SEQADV 5M82 HIS A 394 UNP P73184 EXPRESSION TAG SEQADV 5M82 HIS A 395 UNP P73184 EXPRESSION TAG SEQADV 5M82 HIS A 396 UNP P73184 EXPRESSION TAG SEQADV 5M82 HIS A 397 UNP P73184 EXPRESSION TAG SEQADV 5M82 SER A 398 UNP P73184 EXPRESSION TAG SEQADV 5M82 SER A 399 UNP P73184 EXPRESSION TAG SEQADV 5M82 GLY A 400 UNP P73184 EXPRESSION TAG SEQADV 5M82 LEU A 401 UNP P73184 EXPRESSION TAG SEQADV 5M82 VAL A 402 UNP P73184 EXPRESSION TAG SEQADV 5M82 PRO A 403 UNP P73184 EXPRESSION TAG SEQADV 5M82 ARG A 404 UNP P73184 EXPRESSION TAG SEQADV 5M82 GLY A 405 UNP P73184 EXPRESSION TAG SEQADV 5M82 SER A 406 UNP P73184 EXPRESSION TAG SEQADV 5M82 GLY A 407 UNP P73184 EXPRESSION TAG SEQADV 5M82 MET A 408 UNP P73184 EXPRESSION TAG SEQADV 5M82 LYS A 409 UNP P73184 EXPRESSION TAG SEQADV 5M82 GLU A 410 UNP P73184 EXPRESSION TAG SEQADV 5M82 THR A 411 UNP P73184 EXPRESSION TAG SEQADV 5M82 ALA A 412 UNP P73184 EXPRESSION TAG SEQADV 5M82 ALA A 413 UNP P73184 EXPRESSION TAG SEQADV 5M82 ALA A 414 UNP P73184 EXPRESSION TAG SEQADV 5M82 LYS A 415 UNP P73184 EXPRESSION TAG SEQADV 5M82 PHE A 416 UNP P73184 EXPRESSION TAG SEQADV 5M82 GLU A 417 UNP P73184 EXPRESSION TAG SEQADV 5M82 ARG A 418 UNP P73184 EXPRESSION TAG SEQADV 5M82 GLN A 419 UNP P73184 EXPRESSION TAG SEQADV 5M82 HIS A 420 UNP P73184 EXPRESSION TAG SEQADV 5M82 MET A 421 UNP P73184 EXPRESSION TAG SEQADV 5M82 ASP A 422 UNP P73184 EXPRESSION TAG SEQADV 5M82 SER A 423 UNP P73184 EXPRESSION TAG SEQADV 5M82 PRO A 424 UNP P73184 EXPRESSION TAG SEQADV 5M82 ASP A 425 UNP P73184 EXPRESSION TAG SEQADV 5M82 LEU A 426 UNP P73184 EXPRESSION TAG SEQADV 5M82 GLY A 427 UNP P73184 EXPRESSION TAG SEQADV 5M82 THR A 428 UNP P73184 EXPRESSION TAG SEQADV 5M82 ASP A 429 UNP P73184 EXPRESSION TAG SEQADV 5M82 ASP A 430 UNP P73184 EXPRESSION TAG SEQADV 5M82 ASP A 431 UNP P73184 EXPRESSION TAG SEQADV 5M82 ASP A 432 UNP P73184 EXPRESSION TAG SEQADV 5M82 LYS A 433 UNP P73184 EXPRESSION TAG SEQADV 5M82 ALA A 434 UNP P73184 EXPRESSION TAG SEQADV 5M82 MET A 435 UNP P73184 EXPRESSION TAG SEQADV 5M82 ALA A 436 UNP P73184 EXPRESSION TAG SEQADV 5M82 ASP A 437 UNP P73184 EXPRESSION TAG SEQADV 5M82 ILE A 438 UNP P73184 EXPRESSION TAG SEQADV 5M82 GLY A 439 UNP P73184 EXPRESSION TAG SEQADV 5M82 SER A 440 UNP P73184 EXPRESSION TAG SEQADV 5M82 LEU A 598 UNP P73184 EXPRESSION TAG SEQADV 5M82 GLU A 599 UNP P73184 EXPRESSION TAG SEQADV 5M82 HIS A 600 UNP P73184 EXPRESSION TAG SEQADV 5M82 HIS A 601 UNP P73184 EXPRESSION TAG SEQADV 5M82 HIS A 602 UNP P73184 EXPRESSION TAG SEQADV 5M82 HIS A 603 UNP P73184 EXPRESSION TAG SEQADV 5M82 HIS A 604 UNP P73184 EXPRESSION TAG SEQADV 5M82 HIS A 605 UNP P73184 EXPRESSION TAG SEQRES 1 A 215 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 A 215 ARG GLY SER GLY MET LYS GLU THR ALA ALA ALA LYS PHE SEQRES 3 A 215 GLU ARG GLN HIS MET ASP SER PRO ASP LEU GLY THR ASP SEQRES 4 A 215 ASP ASP ASP LYS ALA MET ALA ASP ILE GLY SER LEU GLN SEQRES 5 A 215 ASN ILE PHE ARG ALA THR SER ASP GLU VAL ARG HIS LEU SEQRES 6 A 215 LEU SER CYS ASP ARG VAL LEU VAL TYR ARG PHE ASN PRO SEQRES 7 A 215 ASP TRP SER GLY GLU PHE ILE HIS GLU SER VAL ALA GLN SEQRES 8 A 215 MET TRP GLU PRO LEU LYS ASP LEU GLN ASN ASN PHE PRO SEQRES 9 A 215 LEU TRP GLN ASP THR TYR LEU GLN GLU ASN GLU GLY GLY SEQRES 10 A 215 ARG TYR ARG ASN HIS GLU SER LEU ALA VAL GLY ASP VAL SEQRES 11 A 215 GLU THR ALA GLY PHE THR ASP CYS HIS LEU ASP ASN LEU SEQRES 12 A 215 ARG ARG PHE GLU ILE ARG ALA PHE LEU THR VAL PRO VAL SEQRES 13 A 215 PHE VAL GLY GLU GLN LEU TRP GLY LEU LEU GLY ALA TYR SEQRES 14 A 215 GLN ASN GLY ALA PRO ARG HIS TRP GLN ALA ARG GLU ILE SEQRES 15 A 215 HIS LEU LEU HIS GLN ILE ALA ASN GLN LEU GLY VAL ALA SEQRES 16 A 215 VAL TYR GLN ALA GLN LEU LEU ALA ARG PHE GLN GLU LEU SEQRES 17 A 215 GLU HIS HIS HIS HIS HIS HIS HET CYC A 701 43 HET 3CX A 702 15 HET NA A 703 1 HET NA A 704 1 HET NA A 705 1 HETNAM CYC PHYCOCYANOBILIN HETNAM 3CX (2S)-3-(CYCLOHEXYLAMINO)-2-HYDROXYPROPANE-1-SULFONIC HETNAM 2 3CX ACID HETNAM NA SODIUM ION FORMUL 2 CYC C33 H40 N4 O6 FORMUL 3 3CX C9 H19 N O4 S FORMUL 4 NA 3(NA 1+) FORMUL 7 HOH *67(H2 O) HELIX 1 AA1 SER A 440 SER A 457 1 18 HELIX 2 AA2 PRO A 485 ASN A 491 1 7 HELIX 3 AA3 THR A 499 ASN A 504 1 6 HELIX 4 AA4 GLY A 506 HIS A 512 5 7 HELIX 5 AA5 THR A 526 PHE A 536 1 11 HELIX 6 AA6 GLN A 568 PHE A 595 1 28 SHEET 1 AA1 5 GLY A 472 VAL A 479 0 SHEET 2 AA1 5 ARG A 460 PHE A 466 -1 N VAL A 463 O ILE A 475 SHEET 3 AA1 5 GLN A 551 ASN A 561 -1 O GLY A 557 N LEU A 462 SHEET 4 AA1 5 ILE A 538 VAL A 548 -1 N ALA A 540 O GLN A 560 SHEET 5 AA1 5 LEU A 515 VAL A 517 -1 N LEU A 515 O THR A 543 LINK SG CYS A 528 CAC CYC A 701 1555 1555 1.73 LINK OG1 THR A 526 NA NA A 705 1555 1555 3.08 LINK OG1 THR A 543 NA NA A 703 1555 1555 2.91 LINK OH TYR A 559 NA NA A 703 1555 1555 2.54 LINK OB CYC A 701 NA NA A 704 1555 1555 2.48 LINK NA NA A 703 O HOH A 823 1555 1555 2.44 LINK NA NA A 705 O HOH A 854 1555 1555 2.80 SITE 1 AC1 21 LEU A 495 GLN A 497 ASP A 498 THR A 499 SITE 2 AC1 21 TYR A 500 ARG A 508 TYR A 509 LEU A 515 SITE 3 AC1 21 THR A 526 CYS A 528 HIS A 529 PHE A 536 SITE 4 AC1 21 PHE A 541 3CX A 702 NA A 703 NA A 704 SITE 5 AC1 21 NA A 705 HOH A 811 HOH A 823 HOH A 832 SITE 6 AC1 21 HOH A 848 SITE 1 AC2 13 LEU A 495 TRP A 496 GLN A 497 TYR A 500 SITE 2 AC2 13 ARG A 508 ALA A 523 GLY A 524 PHE A 525 SITE 3 AC2 13 CYC A 701 HOH A 809 HOH A 818 HOH A 832 SITE 4 AC2 13 HOH A 854 SITE 1 AC3 4 THR A 543 TYR A 559 CYC A 701 HOH A 823 SITE 1 AC4 3 GLN A 490 LEU A 495 CYC A 701 SITE 1 AC5 5 PHE A 525 THR A 526 HIS A 529 CYC A 701 SITE 2 AC5 5 HOH A 854 CRYST1 75.286 75.286 71.380 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013283 0.007669 0.000000 0.00000 SCALE2 0.000000 0.015338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014010 0.00000