HEADER RNA BINDING PROTEIN 28-OCT-16 5M84 TITLE TRANSLATION INITIATION FACTOR 4E IN COMPLEX WITH (SP)-M2(7,2'O)GPPSPA TITLE 2 MRNA 5' CAP ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 4E; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MRNA CAP-BINDING PROTEIN,EIF-4F 25 KDA SUBUNIT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: EIF4E; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-LIGAND COMPLEX, TRANSLATION INITIATION FACTOR, EIF4E, M2(7, KEYWDS 2 2'O)GPPSPA, PHOSPHOROTHIOATE, MRNA 5' CAP ANALOG, TRANSLATION, RNA KEYWDS 3 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.WARMINSKI,E.NOWAK,J.KOWALSKA,J.JEMIELITY,M.NOWOTNY REVDAT 2 17-JAN-24 5M84 1 ATOM REVDAT 1 20-DEC-17 5M84 0 JRNL AUTH M.WARMINSKI,E.NOWAK,D.KUBACKA,J.KOWALSKA,M.NOWOTNY, JRNL AUTH 2 J.JEMIELITY JRNL TITL TRANSLATION INITIATION FACTOR 4E IN COMPLEX WITH JRNL TITL 2 (SP)-M2(7,2'O)GPPSPA MRNA 5' CAP ANALOG JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 35352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.1703 - 4.3428 1.00 2663 141 0.1869 0.2221 REMARK 3 2 4.3428 - 3.4478 1.00 2587 136 0.1628 0.1902 REMARK 3 3 3.4478 - 3.0122 1.00 2619 138 0.1783 0.1865 REMARK 3 4 3.0122 - 2.7369 1.00 2556 134 0.1942 0.2386 REMARK 3 5 2.7369 - 2.5407 1.00 2595 137 0.1984 0.2566 REMARK 3 6 2.5407 - 2.3910 1.00 2569 135 0.2030 0.2262 REMARK 3 7 2.3910 - 2.2712 1.00 2616 138 0.2010 0.2440 REMARK 3 8 2.2712 - 2.1724 1.00 2566 135 0.2182 0.2765 REMARK 3 9 2.1724 - 2.0888 1.00 2578 135 0.2359 0.2769 REMARK 3 10 2.0888 - 2.0167 1.00 2539 134 0.2336 0.2792 REMARK 3 11 2.0167 - 1.9536 1.00 2588 136 0.2582 0.2568 REMARK 3 12 1.9536 - 1.8978 1.00 2528 134 0.2972 0.3251 REMARK 3 13 1.8978 - 1.8478 0.98 2580 135 0.3836 0.4233 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2924 REMARK 3 ANGLE : 1.048 3994 REMARK 3 CHIRALITY : 0.065 427 REMARK 3 PLANARITY : 0.006 496 REMARK 3 DIHEDRAL : 17.932 1669 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -88.9855 -12.7143 44.4577 REMARK 3 T TENSOR REMARK 3 T11: 0.3870 T22: 0.3115 REMARK 3 T33: 0.5000 T12: -0.0216 REMARK 3 T13: -0.0158 T23: -0.0756 REMARK 3 L TENSOR REMARK 3 L11: 6.4756 L22: 8.4475 REMARK 3 L33: 3.4841 L12: -0.1633 REMARK 3 L13: -2.4173 L23: 4.4240 REMARK 3 S TENSOR REMARK 3 S11: -0.3998 S12: 0.6101 S13: -0.8703 REMARK 3 S21: 0.0301 S22: 0.0720 S23: -0.0001 REMARK 3 S31: 0.8171 S32: -0.1580 S33: 0.2956 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -99.4073 11.5246 50.0118 REMARK 3 T TENSOR REMARK 3 T11: 0.2170 T22: 0.2279 REMARK 3 T33: 0.3435 T12: -0.0089 REMARK 3 T13: -0.0853 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 7.0315 L22: 6.8422 REMARK 3 L33: 0.5269 L12: -6.0832 REMARK 3 L13: -1.7196 L23: 1.3442 REMARK 3 S TENSOR REMARK 3 S11: 0.1912 S12: 0.2596 S13: 0.0184 REMARK 3 S21: -0.3544 S22: -0.3087 S23: 0.6411 REMARK 3 S31: -0.1090 S32: -0.1216 S33: 0.1404 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -93.0052 5.7181 51.1127 REMARK 3 T TENSOR REMARK 3 T11: 0.1219 T22: 0.1781 REMARK 3 T33: 0.1742 T12: 0.0144 REMARK 3 T13: -0.0838 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 4.7923 L22: 3.9157 REMARK 3 L33: 5.0502 L12: 0.5874 REMARK 3 L13: -1.4262 L23: 0.4399 REMARK 3 S TENSOR REMARK 3 S11: 0.0323 S12: -0.0939 S13: 0.0974 REMARK 3 S21: -0.0310 S22: -0.0616 S23: 0.1051 REMARK 3 S31: -0.2767 S32: -0.1543 S33: 0.0209 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): -85.3106 6.5087 62.6807 REMARK 3 T TENSOR REMARK 3 T11: 0.2757 T22: 0.3763 REMARK 3 T33: 0.2526 T12: -0.0545 REMARK 3 T13: -0.1017 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 4.0616 L22: 2.2993 REMARK 3 L33: 2.9170 L12: -0.0850 REMARK 3 L13: 0.1581 L23: -0.0840 REMARK 3 S TENSOR REMARK 3 S11: 0.0695 S12: -0.8535 S13: 0.0576 REMARK 3 S21: 0.4780 S22: -0.1661 S23: -0.2395 REMARK 3 S31: -0.1901 S32: 0.1900 S33: 0.0660 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -88.8988 10.9734 33.7196 REMARK 3 T TENSOR REMARK 3 T11: 0.3909 T22: 0.5334 REMARK 3 T33: 0.2904 T12: -0.1748 REMARK 3 T13: -0.0493 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 7.3124 L22: 5.3540 REMARK 3 L33: 6.1480 L12: 0.5618 REMARK 3 L13: -6.1202 L23: -0.0990 REMARK 3 S TENSOR REMARK 3 S11: -0.1689 S12: 0.9469 S13: -0.5420 REMARK 3 S21: -0.8431 S22: 0.3985 S23: 0.1476 REMARK 3 S31: -0.5344 S32: -0.6109 S33: -0.2912 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -60.7181 6.0431 27.2278 REMARK 3 T TENSOR REMARK 3 T11: 0.7127 T22: 0.6678 REMARK 3 T33: 1.0535 T12: -0.0205 REMARK 3 T13: 0.1968 T23: -0.3986 REMARK 3 L TENSOR REMARK 3 L11: 3.0388 L22: 5.6829 REMARK 3 L33: 8.6447 L12: 3.2431 REMARK 3 L13: 2.8522 L23: -0.5991 REMARK 3 S TENSOR REMARK 3 S11: -0.0945 S12: 1.1060 S13: -1.7148 REMARK 3 S21: -0.3885 S22: 0.0784 S23: -1.5588 REMARK 3 S31: 1.1962 S32: 1.4346 S33: -0.2855 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 60 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -70.9627 14.3676 33.5233 REMARK 3 T TENSOR REMARK 3 T11: 0.4514 T22: 0.3435 REMARK 3 T33: 0.3968 T12: -0.1434 REMARK 3 T13: 0.1008 T23: -0.1372 REMARK 3 L TENSOR REMARK 3 L11: 7.9771 L22: 2.8429 REMARK 3 L33: 4.2464 L12: 0.8625 REMARK 3 L13: -2.3421 L23: -0.2416 REMARK 3 S TENSOR REMARK 3 S11: -0.4357 S12: 0.0564 S13: -0.5933 REMARK 3 S21: -0.3811 S22: 0.4736 S23: -0.7379 REMARK 3 S31: 0.0980 S32: 0.3560 S33: -0.0455 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 89 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -67.8563 6.0017 22.1263 REMARK 3 T TENSOR REMARK 3 T11: 0.8041 T22: 0.7231 REMARK 3 T33: 0.8142 T12: -0.3197 REMARK 3 T13: 0.3167 T23: -0.4039 REMARK 3 L TENSOR REMARK 3 L11: 0.5492 L22: 0.2827 REMARK 3 L33: 3.4594 L12: -0.3861 REMARK 3 L13: -0.9652 L23: 0.8086 REMARK 3 S TENSOR REMARK 3 S11: -0.1649 S12: 0.4777 S13: -0.8998 REMARK 3 S21: -0.2967 S22: 0.6320 S23: -0.9242 REMARK 3 S31: 0.8510 S32: 0.5994 S33: -0.3652 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 105 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -65.0153 19.3036 17.4339 REMARK 3 T TENSOR REMARK 3 T11: 1.0032 T22: 0.8746 REMARK 3 T33: 0.6397 T12: -0.4689 REMARK 3 T13: 0.2826 T23: -0.2095 REMARK 3 L TENSOR REMARK 3 L11: 2.0901 L22: 1.1768 REMARK 3 L33: 1.1871 L12: -0.5534 REMARK 3 L13: 1.2673 L23: 0.3144 REMARK 3 S TENSOR REMARK 3 S11: -0.3364 S12: 0.9961 S13: 0.0724 REMARK 3 S21: -0.7586 S22: 0.3768 S23: -0.4832 REMARK 3 S31: -0.2287 S32: 0.5533 S33: -0.1846 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 126 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): -74.9114 19.9553 23.2635 REMARK 3 T TENSOR REMARK 3 T11: 0.7492 T22: 0.5843 REMARK 3 T33: 0.3133 T12: -0.2965 REMARK 3 T13: 0.0831 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 2.3436 L22: 2.7460 REMARK 3 L33: 6.1348 L12: -0.3511 REMARK 3 L13: -2.1370 L23: -0.5750 REMARK 3 S TENSOR REMARK 3 S11: -0.7040 S12: 1.1652 S13: 0.0994 REMARK 3 S21: -1.2557 S22: 0.8806 S23: 0.0095 REMARK 3 S31: -0.8569 S32: -0.4547 S33: -0.1315 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 143 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): -70.2632 15.5070 12.5713 REMARK 3 T TENSOR REMARK 3 T11: 1.1787 T22: 1.1374 REMARK 3 T33: 0.3981 T12: -0.6216 REMARK 3 T13: 0.3296 T23: -0.2933 REMARK 3 L TENSOR REMARK 3 L11: 1.7822 L22: 0.9594 REMARK 3 L33: 1.3792 L12: -0.7614 REMARK 3 L13: 0.7454 L23: 0.5297 REMARK 3 S TENSOR REMARK 3 S11: -0.0395 S12: 1.0677 S13: 0.1096 REMARK 3 S21: -0.8483 S22: 0.1894 S23: -0.4168 REMARK 3 S31: -0.1397 S32: 0.1633 S33: -0.3622 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5M84 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200001927. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35357 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.664 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.72 REMARK 200 R MERGE FOR SHELL (I) : 0.82300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1L8B REMARK 200 REMARK 200 REMARK: THIN PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 10000, 0.2M CH3COONA, 0.1M REMARK 280 TRIS PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 23.47300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.88150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 23.47300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.88150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 461 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 28 REMARK 465 ALA A 29 REMARK 465 ASN A 30 REMARK 465 THR A 205 REMARK 465 LYS A 206 REMARK 465 SER A 207 REMARK 465 GLY A 208 REMARK 465 SER A 209 REMARK 465 THR A 210 REMARK 465 THR A 211 REMARK 465 VAL B 28 REMARK 465 ALA B 29 REMARK 465 ASN B 30 REMARK 465 LEU B 189 REMARK 465 PRO B 190 REMARK 465 PRO B 191 REMARK 465 THR B 205 REMARK 465 LYS B 206 REMARK 465 SER B 207 REMARK 465 GLY B 208 REMARK 465 SER B 209 REMARK 465 THR B 210 REMARK 465 THR B 211 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 HIS A 33 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 57 CD OE1 NE2 REMARK 470 ARG A 61 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 LYS A 106 CE NZ REMARK 470 ARG A 109 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 ARG A 173 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 LYS A 192 CD CE NZ REMARK 470 VAL A 194 CG1 CG2 REMARK 470 GLN A 198 CD OE1 NE2 REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 PHE A 215 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS B 33 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 ASN B 50 OD1 ND2 REMARK 470 LYS B 52 CG CD CE NZ REMARK 470 SER B 53 OG REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 THR B 55 OG1 CG2 REMARK 470 GLN B 57 CG CD OE1 NE2 REMARK 470 LEU B 60 CD1 CD2 REMARK 470 ARG B 61 CG CD NE CZ NH1 NH2 REMARK 470 MET B 86 CG SD CE REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 ARG B 109 NE CZ NH1 NH2 REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 ASP B 143 CG OD1 OD2 REMARK 470 ASP B 144 CG OD1 OD2 REMARK 470 ASP B 147 CG OD1 OD2 REMARK 470 LYS B 159 CG CD CE NZ REMARK 470 LYS B 162 NZ REMARK 470 GLU B 169 CG CD OE1 OE2 REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 470 ARG B 173 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 174 CG OD1 OD2 REMARK 470 THR B 177 OG1 CG2 REMARK 470 ARG B 181 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 184 CG CD CE NZ REMARK 470 GLU B 185 CG CD OE1 OE2 REMARK 470 ARG B 186 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 192 CG CD CE NZ REMARK 470 ILE B 193 CG1 CG2 CD1 REMARK 470 VAL B 194 CG1 CG2 REMARK 470 ILE B 195 CG1 CG2 CD1 REMARK 470 LYS B 212 CG CD CE NZ REMARK 470 PHE B 215 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL B 216 CG1 CG2 REMARK 470 VAL B 217 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 99 C PRO A 100 N 0.154 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 67 24.91 -144.30 REMARK 500 ASP A 143 -136.43 62.84 REMARK 500 PRO A 191 2.79 -68.39 REMARK 500 ASP B 67 24.77 -145.47 REMARK 500 ASP B 143 -136.15 62.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 YDZ A 301 REMARK 610 YDZ B 300 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YDZ A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YDZ B 300 DBREF 5M84 A 28 217 UNP P63073 IF4E_MOUSE 28 217 DBREF 5M84 B 28 217 UNP P63073 IF4E_MOUSE 28 217 SEQRES 1 A 190 VAL ALA ASN PRO GLU HIS TYR ILE LYS HIS PRO LEU GLN SEQRES 2 A 190 ASN ARG TRP ALA LEU TRP PHE PHE LYS ASN ASP LYS SER SEQRES 3 A 190 LYS THR TRP GLN ALA ASN LEU ARG LEU ILE SER LYS PHE SEQRES 4 A 190 ASP THR VAL GLU ASP PHE TRP ALA LEU TYR ASN HIS ILE SEQRES 5 A 190 GLN LEU SER SER ASN LEU MET PRO GLY CYS ASP TYR SER SEQRES 6 A 190 LEU PHE LYS ASP GLY ILE GLU PRO MET TRP GLU ASP GLU SEQRES 7 A 190 LYS ASN LYS ARG GLY GLY ARG TRP LEU ILE THR LEU ASN SEQRES 8 A 190 LYS GLN GLN ARG ARG SER ASP LEU ASP ARG PHE TRP LEU SEQRES 9 A 190 GLU THR LEU LEU CYS LEU ILE GLY GLU SER PHE ASP ASP SEQRES 10 A 190 TYR SER ASP ASP VAL CYS GLY ALA VAL VAL ASN VAL ARG SEQRES 11 A 190 ALA LYS GLY ASP LYS ILE ALA ILE TRP THR THR GLU CYS SEQRES 12 A 190 GLU ASN ARG ASP ALA VAL THR HIS ILE GLY ARG VAL TYR SEQRES 13 A 190 LYS GLU ARG LEU GLY LEU PRO PRO LYS ILE VAL ILE GLY SEQRES 14 A 190 TYR GLN SER HIS ALA ASP THR ALA THR LYS SER GLY SER SEQRES 15 A 190 THR THR LYS ASN ARG PHE VAL VAL SEQRES 1 B 190 VAL ALA ASN PRO GLU HIS TYR ILE LYS HIS PRO LEU GLN SEQRES 2 B 190 ASN ARG TRP ALA LEU TRP PHE PHE LYS ASN ASP LYS SER SEQRES 3 B 190 LYS THR TRP GLN ALA ASN LEU ARG LEU ILE SER LYS PHE SEQRES 4 B 190 ASP THR VAL GLU ASP PHE TRP ALA LEU TYR ASN HIS ILE SEQRES 5 B 190 GLN LEU SER SER ASN LEU MET PRO GLY CYS ASP TYR SER SEQRES 6 B 190 LEU PHE LYS ASP GLY ILE GLU PRO MET TRP GLU ASP GLU SEQRES 7 B 190 LYS ASN LYS ARG GLY GLY ARG TRP LEU ILE THR LEU ASN SEQRES 8 B 190 LYS GLN GLN ARG ARG SER ASP LEU ASP ARG PHE TRP LEU SEQRES 9 B 190 GLU THR LEU LEU CYS LEU ILE GLY GLU SER PHE ASP ASP SEQRES 10 B 190 TYR SER ASP ASP VAL CYS GLY ALA VAL VAL ASN VAL ARG SEQRES 11 B 190 ALA LYS GLY ASP LYS ILE ALA ILE TRP THR THR GLU CYS SEQRES 12 B 190 GLU ASN ARG ASP ALA VAL THR HIS ILE GLY ARG VAL TYR SEQRES 13 B 190 LYS GLU ARG LEU GLY LEU PRO PRO LYS ILE VAL ILE GLY SEQRES 14 B 190 TYR GLN SER HIS ALA ASP THR ALA THR LYS SER GLY SER SEQRES 15 B 190 THR THR LYS ASN ARG PHE VAL VAL HET YDZ A 301 34 HET GOL A 302 6 HET GOL A 303 6 HET YDZ B 300 34 HETNAM YDZ [[[(2~{R},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3,4- HETNAM 2 YDZ BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL- HETNAM 3 YDZ PHOSPHORYL]OXY-SULFANYL-PHOSPHORYL] [(2~{R},3~{R}, HETNAM 4 YDZ 4~{R},5~{R})-5-(2-AZANYL-7-METHYL-6-OXIDANYL-PURIN-7- HETNAM 5 YDZ IUM-9-YL)-4-METHOXY-3-OXIDANYL-OXOLAN-2-YL]METHYL HETNAM 6 YDZ HYDROGEN PHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 YDZ 2(C22 H32 N10 O16 P3 S 1+) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 7 HOH *133(H2 O) HELIX 1 AA1 TRP A 56 ALA A 58 5 3 HELIX 2 AA2 VAL A 69 ILE A 79 1 11 HELIX 3 AA3 LEU A 81 LEU A 85 5 5 HELIX 4 AA4 ASN A 118 ASP A 125 1 8 HELIX 5 AA5 ASP A 125 GLY A 139 1 15 HELIX 6 AA6 PHE A 142 ASP A 147 5 6 HELIX 7 AA7 ASN A 172 GLY A 188 1 17 HELIX 8 AA8 HIS A 200 ALA A 204 1 5 HELIX 9 AA9 TRP B 56 ALA B 58 5 3 HELIX 10 AB1 VAL B 69 ILE B 79 1 11 HELIX 11 AB2 LEU B 81 LEU B 85 5 5 HELIX 12 AB3 ASP B 104 ARG B 109 1 6 HELIX 13 AB4 GLN B 120 ASP B 125 1 6 HELIX 14 AB5 ASP B 125 GLY B 139 1 15 HELIX 15 AB6 PHE B 142 ASP B 147 5 6 HELIX 16 AB7 ASN B 172 GLY B 188 1 17 HELIX 17 AB8 HIS B 200 ALA B 204 1 5 SHEET 1 AA1 8 LEU A 60 THR A 68 0 SHEET 2 AA1 8 PRO A 38 LYS A 49 -1 N PHE A 47 O ARG A 61 SHEET 3 AA1 8 CYS A 89 LYS A 95 -1 O SER A 92 N TRP A 46 SHEET 4 AA1 8 VAL A 149 VAL A 156 -1 O VAL A 154 N TYR A 91 SHEET 5 AA1 8 ASP A 161 THR A 167 -1 O TRP A 166 N CYS A 150 SHEET 6 AA1 8 GLY A 111 LEU A 117 -1 N ILE A 115 O ILE A 163 SHEET 7 AA1 8 ILE A 195 SER A 199 -1 O GLY A 196 N LEU A 114 SHEET 8 AA1 8 PHE A 215 VAL A 217 -1 O PHE A 215 N TYR A 197 SHEET 1 AA2 8 LEU B 60 THR B 68 0 SHEET 2 AA2 8 PRO B 38 LYS B 49 -1 N LEU B 39 O ASP B 67 SHEET 3 AA2 8 CYS B 89 LYS B 95 -1 O SER B 92 N TRP B 46 SHEET 4 AA2 8 VAL B 149 VAL B 156 -1 O VAL B 154 N TYR B 91 SHEET 5 AA2 8 LYS B 162 THR B 167 -1 O TRP B 166 N GLY B 151 SHEET 6 AA2 8 GLY B 111 THR B 116 -1 N ILE B 115 O ILE B 163 SHEET 7 AA2 8 ILE B 195 SER B 199 -1 O GLN B 198 N ARG B 112 SHEET 8 AA2 8 PHE B 215 VAL B 217 -1 O PHE B 215 N TYR B 197 SITE 1 AC1 11 TRP A 56 MET A 101 TRP A 102 GLU A 103 SITE 2 AC1 11 ASP A 143 ARG A 157 LYS A 162 HOH A 413 SITE 3 AC1 11 HOH A 423 HOH A 434 HOH A 477 SITE 1 AC2 3 THR A 116 GLN A 121 ILE A 195 SITE 1 AC3 4 TYR A 76 ASP A 127 ARG A 128 HOH A 496 SITE 1 AC4 6 TRP B 56 MET B 101 TRP B 102 GLU B 103 SITE 2 AC4 6 ARG B 157 LYS B 162 CRYST1 46.946 59.763 149.428 90.00 95.84 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021301 0.000000 0.002181 0.00000 SCALE2 0.000000 0.016733 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006727 0.00000