data_5M93 # _entry.id 5M93 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5M93 pdb_00005m93 10.2210/pdb5m93/pdb WWPDB D_1200002106 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-12-14 2 'Structure model' 2 0 2020-07-29 3 'Structure model' 2 1 2024-01-17 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Structure summary' 5 3 'Structure model' 'Data collection' 6 3 'Structure model' 'Database references' 7 3 'Structure model' 'Refinement description' 8 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' chem_comp 3 2 'Structure model' entity 4 2 'Structure model' pdbx_chem_comp_identifier 5 2 'Structure model' pdbx_entity_nonpoly 6 2 'Structure model' struct_conn 7 2 'Structure model' struct_site 8 2 'Structure model' struct_site_gen 9 3 'Structure model' chem_comp 10 3 'Structure model' chem_comp_atom 11 3 'Structure model' chem_comp_bond 12 3 'Structure model' database_2 13 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.auth_atom_id' 2 2 'Structure model' '_atom_site.label_atom_id' 3 2 'Structure model' '_chem_comp.name' 4 2 'Structure model' '_chem_comp.type' 5 2 'Structure model' '_entity.pdbx_description' 6 2 'Structure model' '_pdbx_entity_nonpoly.name' 7 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 8 3 'Structure model' '_chem_comp.pdbx_synonyms' 9 3 'Structure model' '_database_2.pdbx_DOI' 10 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5M93 _pdbx_database_status.recvd_initial_deposition_date 2016-10-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kalayil, S.' 1 'Bhogaraju, S.' 2 'Dikic, I.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Cell _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1097-4172 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 167 _citation.language ? _citation.page_first 1636 _citation.page_last 1649.e13 _citation.title 'Phosphoribosylation of Ubiquitin Promotes Serine Ubiquitination and Impairs Conventional Ubiquitination.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.cell.2016.11.019 _citation.pdbx_database_id_PubMed 27912065 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bhogaraju, S.' 1 ? primary 'Kalayil, S.' 2 ? primary 'Liu, Y.' 3 ? primary 'Bonn, F.' 4 ? primary 'Colby, T.' 5 ? primary 'Matic, I.' 6 ? primary 'Dikic, I.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Polyubiquitin-B 8857.088 3 ? M1S ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 non-polymer man alpha-D-ribofuranose 150.130 2 ? ? ? ? 4 water nat water 18.015 112 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GPLGSQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG _entity_poly.pdbx_seq_one_letter_code_can GPLGSQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 alpha-D-ribofuranose RIB 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 GLN n 1 7 ILE n 1 8 PHE n 1 9 VAL n 1 10 LYS n 1 11 THR n 1 12 LEU n 1 13 THR n 1 14 GLY n 1 15 LYS n 1 16 THR n 1 17 ILE n 1 18 THR n 1 19 LEU n 1 20 GLU n 1 21 VAL n 1 22 GLU n 1 23 PRO n 1 24 SER n 1 25 ASP n 1 26 THR n 1 27 ILE n 1 28 GLU n 1 29 ASN n 1 30 VAL n 1 31 LYS n 1 32 ALA n 1 33 LYS n 1 34 ILE n 1 35 GLN n 1 36 ASP n 1 37 LYS n 1 38 GLU n 1 39 GLY n 1 40 ILE n 1 41 PRO n 1 42 PRO n 1 43 ASP n 1 44 GLN n 1 45 GLN n 1 46 ARG n 1 47 LEU n 1 48 ILE n 1 49 PHE n 1 50 ALA n 1 51 GLY n 1 52 LYS n 1 53 GLN n 1 54 LEU n 1 55 GLU n 1 56 ASP n 1 57 GLY n 1 58 ARG n 1 59 THR n 1 60 LEU n 1 61 SER n 1 62 ASP n 1 63 TYR n 1 64 ASN n 1 65 ILE n 1 66 GLN n 1 67 LYS n 1 68 GLU n 1 69 SER n 1 70 THR n 1 71 LEU n 1 72 HIS n 1 73 LEU n 1 74 VAL n 1 75 LEU n 1 76 ARG n 1 77 LEU n 1 78 ARG n 1 79 GLY n 1 80 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 80 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene UBB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PGEX-6P1 _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RIB 'D-saccharide, alpha linking' . alpha-D-ribofuranose 'alpha-D-ribose; D-ribose; ribose' 'C5 H10 O5' 150.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier RIB 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DRibfa RIB 'COMMON NAME' GMML 1.0 a-D-ribofuranose RIB 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Ribf RIB 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Rib # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 PRO 2 -2 ? ? ? A . n A 1 3 LEU 3 -1 ? ? ? A . n A 1 4 GLY 4 0 ? ? ? A . n A 1 5 SER 5 1 1 SER SER A . n A 1 6 GLN 6 2 2 GLN GLN A . n A 1 7 ILE 7 3 3 ILE ILE A . n A 1 8 PHE 8 4 4 PHE PHE A . n A 1 9 VAL 9 5 5 VAL VAL A . n A 1 10 LYS 10 6 6 LYS LYS A . n A 1 11 THR 11 7 7 THR THR A . n A 1 12 LEU 12 8 8 LEU LEU A . n A 1 13 THR 13 9 9 THR THR A . n A 1 14 GLY 14 10 10 GLY GLY A . n A 1 15 LYS 15 11 11 LYS LYS A . n A 1 16 THR 16 12 12 THR THR A . n A 1 17 ILE 17 13 13 ILE ILE A . n A 1 18 THR 18 14 14 THR THR A . n A 1 19 LEU 19 15 15 LEU LEU A . n A 1 20 GLU 20 16 16 GLU GLU A . n A 1 21 VAL 21 17 17 VAL VAL A . n A 1 22 GLU 22 18 18 GLU GLU A . n A 1 23 PRO 23 19 19 PRO PRO A . n A 1 24 SER 24 20 20 SER SER A . n A 1 25 ASP 25 21 21 ASP ASP A . n A 1 26 THR 26 22 22 THR THR A . n A 1 27 ILE 27 23 23 ILE ILE A . n A 1 28 GLU 28 24 24 GLU GLU A . n A 1 29 ASN 29 25 25 ASN ASN A . n A 1 30 VAL 30 26 26 VAL VAL A . n A 1 31 LYS 31 27 27 LYS LYS A . n A 1 32 ALA 32 28 28 ALA ALA A . n A 1 33 LYS 33 29 29 LYS LYS A . n A 1 34 ILE 34 30 30 ILE ILE A . n A 1 35 GLN 35 31 31 GLN GLN A . n A 1 36 ASP 36 32 32 ASP ASP A . n A 1 37 LYS 37 33 33 LYS LYS A . n A 1 38 GLU 38 34 34 GLU GLU A . n A 1 39 GLY 39 35 35 GLY GLY A . n A 1 40 ILE 40 36 36 ILE ILE A . n A 1 41 PRO 41 37 37 PRO PRO A . n A 1 42 PRO 42 38 38 PRO PRO A . n A 1 43 ASP 43 39 39 ASP ASP A . n A 1 44 GLN 44 40 40 GLN GLN A . n A 1 45 GLN 45 41 41 GLN GLN A . n A 1 46 ARG 46 42 42 ARG ARG A . n A 1 47 LEU 47 43 43 LEU LEU A . n A 1 48 ILE 48 44 44 ILE ILE A . n A 1 49 PHE 49 45 45 PHE PHE A . n A 1 50 ALA 50 46 46 ALA ALA A . n A 1 51 GLY 51 47 47 GLY GLY A . n A 1 52 LYS 52 48 48 LYS LYS A . n A 1 53 GLN 53 49 49 GLN GLN A . n A 1 54 LEU 54 50 50 LEU LEU A . n A 1 55 GLU 55 51 51 GLU GLU A . n A 1 56 ASP 56 52 52 ASP ASP A . n A 1 57 GLY 57 53 53 GLY GLY A . n A 1 58 ARG 58 54 54 ARG ARG A . n A 1 59 THR 59 55 55 THR THR A . n A 1 60 LEU 60 56 56 LEU LEU A . n A 1 61 SER 61 57 57 SER SER A . n A 1 62 ASP 62 58 58 ASP ASP A . n A 1 63 TYR 63 59 59 TYR TYR A . n A 1 64 ASN 64 60 60 ASN ASN A . n A 1 65 ILE 65 61 61 ILE ILE A . n A 1 66 GLN 66 62 62 GLN GLN A . n A 1 67 LYS 67 63 63 LYS LYS A . n A 1 68 GLU 68 64 64 GLU GLU A . n A 1 69 SER 69 65 65 SER SER A . n A 1 70 THR 70 66 66 THR THR A . n A 1 71 LEU 71 67 67 LEU LEU A . n A 1 72 HIS 72 68 68 HIS HIS A . n A 1 73 LEU 73 69 69 LEU LEU A . n A 1 74 VAL 74 70 70 VAL VAL A . n A 1 75 LEU 75 71 71 LEU LEU A . n A 1 76 ARG 76 72 72 ARG ARG A . n A 1 77 LEU 77 73 73 LEU LEU A . n A 1 78 ARG 78 74 74 ARG ARG A . n A 1 79 GLY 79 75 75 GLY GLY A . n A 1 80 GLY 80 76 ? ? ? A . n B 1 1 GLY 1 -3 -3 GLY GLY B . n B 1 2 PRO 2 -2 -2 PRO PRO B . n B 1 3 LEU 3 -1 -1 LEU LEU B . n B 1 4 GLY 4 0 0 GLY GLY B . n B 1 5 SER 5 1 1 SER SER B . n B 1 6 GLN 6 2 2 GLN GLN B . n B 1 7 ILE 7 3 3 ILE ILE B . n B 1 8 PHE 8 4 4 PHE PHE B . n B 1 9 VAL 9 5 5 VAL VAL B . n B 1 10 LYS 10 6 6 LYS LYS B . n B 1 11 THR 11 7 7 THR THR B . n B 1 12 LEU 12 8 8 LEU LEU B . n B 1 13 THR 13 9 9 THR THR B . n B 1 14 GLY 14 10 10 GLY GLY B . n B 1 15 LYS 15 11 11 LYS LYS B . n B 1 16 THR 16 12 12 THR THR B . n B 1 17 ILE 17 13 13 ILE ILE B . n B 1 18 THR 18 14 14 THR THR B . n B 1 19 LEU 19 15 15 LEU LEU B . n B 1 20 GLU 20 16 16 GLU GLU B . n B 1 21 VAL 21 17 17 VAL VAL B . n B 1 22 GLU 22 18 18 GLU GLU B . n B 1 23 PRO 23 19 19 PRO PRO B . n B 1 24 SER 24 20 20 SER SER B . n B 1 25 ASP 25 21 21 ASP ASP B . n B 1 26 THR 26 22 22 THR THR B . n B 1 27 ILE 27 23 23 ILE ILE B . n B 1 28 GLU 28 24 24 GLU GLU B . n B 1 29 ASN 29 25 25 ASN ASN B . n B 1 30 VAL 30 26 26 VAL VAL B . n B 1 31 LYS 31 27 27 LYS LYS B . n B 1 32 ALA 32 28 28 ALA ALA B . n B 1 33 LYS 33 29 29 LYS LYS B . n B 1 34 ILE 34 30 30 ILE ILE B . n B 1 35 GLN 35 31 31 GLN GLN B . n B 1 36 ASP 36 32 32 ASP ASP B . n B 1 37 LYS 37 33 33 LYS LYS B . n B 1 38 GLU 38 34 34 GLU GLU B . n B 1 39 GLY 39 35 35 GLY GLY B . n B 1 40 ILE 40 36 36 ILE ILE B . n B 1 41 PRO 41 37 37 PRO PRO B . n B 1 42 PRO 42 38 38 PRO PRO B . n B 1 43 ASP 43 39 39 ASP ASP B . n B 1 44 GLN 44 40 40 GLN GLN B . n B 1 45 GLN 45 41 41 GLN GLN B . n B 1 46 ARG 46 42 42 ARG ARG B . n B 1 47 LEU 47 43 43 LEU LEU B . n B 1 48 ILE 48 44 44 ILE ILE B . n B 1 49 PHE 49 45 45 PHE PHE B . n B 1 50 ALA 50 46 46 ALA ALA B . n B 1 51 GLY 51 47 47 GLY GLY B . n B 1 52 LYS 52 48 48 LYS LYS B . n B 1 53 GLN 53 49 49 GLN GLN B . n B 1 54 LEU 54 50 50 LEU LEU B . n B 1 55 GLU 55 51 51 GLU GLU B . n B 1 56 ASP 56 52 52 ASP ASP B . n B 1 57 GLY 57 53 53 GLY GLY B . n B 1 58 ARG 58 54 54 ARG ARG B . n B 1 59 THR 59 55 55 THR THR B . n B 1 60 LEU 60 56 56 LEU LEU B . n B 1 61 SER 61 57 57 SER SER B . n B 1 62 ASP 62 58 58 ASP ASP B . n B 1 63 TYR 63 59 59 TYR TYR B . n B 1 64 ASN 64 60 60 ASN ASN B . n B 1 65 ILE 65 61 61 ILE ILE B . n B 1 66 GLN 66 62 62 GLN GLN B . n B 1 67 LYS 67 63 63 LYS LYS B . n B 1 68 GLU 68 64 64 GLU GLU B . n B 1 69 SER 69 65 65 SER SER B . n B 1 70 THR 70 66 66 THR THR B . n B 1 71 LEU 71 67 67 LEU LEU B . n B 1 72 HIS 72 68 68 HIS HIS B . n B 1 73 LEU 73 69 69 LEU LEU B . n B 1 74 VAL 74 70 70 VAL VAL B . n B 1 75 LEU 75 71 71 LEU LEU B . n B 1 76 ARG 76 72 72 ARG ARG B . n B 1 77 LEU 77 73 73 LEU LEU B . n B 1 78 ARG 78 74 ? ? ? B . n B 1 79 GLY 79 75 ? ? ? B . n B 1 80 GLY 80 76 ? ? ? B . n C 1 1 GLY 1 -3 -3 GLY GLY C . n C 1 2 PRO 2 -2 -2 PRO PRO C . n C 1 3 LEU 3 -1 -1 LEU LEU C . n C 1 4 GLY 4 0 0 GLY GLY C . n C 1 5 SER 5 1 1 SER SER C . n C 1 6 GLN 6 2 2 GLN GLN C . n C 1 7 ILE 7 3 3 ILE ILE C . n C 1 8 PHE 8 4 4 PHE PHE C . n C 1 9 VAL 9 5 5 VAL VAL C . n C 1 10 LYS 10 6 6 LYS LYS C . n C 1 11 THR 11 7 7 THR THR C . n C 1 12 LEU 12 8 8 LEU LEU C . n C 1 13 THR 13 9 9 THR THR C . n C 1 14 GLY 14 10 10 GLY GLY C . n C 1 15 LYS 15 11 11 LYS LYS C . n C 1 16 THR 16 12 12 THR THR C . n C 1 17 ILE 17 13 13 ILE ILE C . n C 1 18 THR 18 14 14 THR THR C . n C 1 19 LEU 19 15 15 LEU LEU C . n C 1 20 GLU 20 16 16 GLU GLU C . n C 1 21 VAL 21 17 17 VAL VAL C . n C 1 22 GLU 22 18 18 GLU GLU C . n C 1 23 PRO 23 19 19 PRO PRO C . n C 1 24 SER 24 20 20 SER SER C . n C 1 25 ASP 25 21 21 ASP ASP C . n C 1 26 THR 26 22 22 THR THR C . n C 1 27 ILE 27 23 23 ILE ILE C . n C 1 28 GLU 28 24 24 GLU GLU C . n C 1 29 ASN 29 25 25 ASN ASN C . n C 1 30 VAL 30 26 26 VAL VAL C . n C 1 31 LYS 31 27 27 LYS LYS C . n C 1 32 ALA 32 28 28 ALA ALA C . n C 1 33 LYS 33 29 29 LYS LYS C . n C 1 34 ILE 34 30 30 ILE ILE C . n C 1 35 GLN 35 31 31 GLN GLN C . n C 1 36 ASP 36 32 32 ASP ASP C . n C 1 37 LYS 37 33 33 LYS LYS C . n C 1 38 GLU 38 34 34 GLU GLU C . n C 1 39 GLY 39 35 35 GLY GLY C . n C 1 40 ILE 40 36 36 ILE ILE C . n C 1 41 PRO 41 37 37 PRO PRO C . n C 1 42 PRO 42 38 38 PRO PRO C . n C 1 43 ASP 43 39 39 ASP ASP C . n C 1 44 GLN 44 40 40 GLN GLN C . n C 1 45 GLN 45 41 41 GLN GLN C . n C 1 46 ARG 46 42 42 ARG ARG C . n C 1 47 LEU 47 43 43 LEU LEU C . n C 1 48 ILE 48 44 44 ILE ILE C . n C 1 49 PHE 49 45 45 PHE PHE C . n C 1 50 ALA 50 46 46 ALA ALA C . n C 1 51 GLY 51 47 47 GLY GLY C . n C 1 52 LYS 52 48 48 LYS LYS C . n C 1 53 GLN 53 49 49 GLN GLN C . n C 1 54 LEU 54 50 50 LEU LEU C . n C 1 55 GLU 55 51 51 GLU GLU C . n C 1 56 ASP 56 52 52 ASP ASP C . n C 1 57 GLY 57 53 53 GLY GLY C . n C 1 58 ARG 58 54 54 ARG ARG C . n C 1 59 THR 59 55 55 THR THR C . n C 1 60 LEU 60 56 56 LEU LEU C . n C 1 61 SER 61 57 57 SER SER C . n C 1 62 ASP 62 58 58 ASP ASP C . n C 1 63 TYR 63 59 59 TYR TYR C . n C 1 64 ASN 64 60 60 ASN ASN C . n C 1 65 ILE 65 61 61 ILE ILE C . n C 1 66 GLN 66 62 62 GLN GLN C . n C 1 67 LYS 67 63 63 LYS LYS C . n C 1 68 GLU 68 64 64 GLU GLU C . n C 1 69 SER 69 65 65 SER SER C . n C 1 70 THR 70 66 66 THR THR C . n C 1 71 LEU 71 67 67 LEU LEU C . n C 1 72 HIS 72 68 68 HIS HIS C . n C 1 73 LEU 73 69 69 LEU LEU C . n C 1 74 VAL 74 70 70 VAL VAL C . n C 1 75 LEU 75 71 71 LEU LEU C . n C 1 76 ARG 76 72 72 ARG ARG C . n C 1 77 LEU 77 73 73 LEU LEU C . n C 1 78 ARG 78 74 74 ARG ARG C . n C 1 79 GLY 79 75 ? ? ? C . n C 1 80 GLY 80 76 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 1 101 1 SO4 SO4 A . E 3 RIB 1 101 3 RIB RIB B . F 2 SO4 1 102 2 SO4 SO4 B . G 3 RIB 1 101 2 RIB RIB C . H 4 HOH 1 201 101 HOH HOH A . H 4 HOH 2 202 57 HOH HOH A . H 4 HOH 3 203 38 HOH HOH A . H 4 HOH 4 204 5 HOH HOH A . H 4 HOH 5 205 7 HOH HOH A . H 4 HOH 6 206 13 HOH HOH A . H 4 HOH 7 207 46 HOH HOH A . H 4 HOH 8 208 14 HOH HOH A . H 4 HOH 9 209 50 HOH HOH A . H 4 HOH 10 210 3 HOH HOH A . H 4 HOH 11 211 102 HOH HOH A . H 4 HOH 12 212 39 HOH HOH A . H 4 HOH 13 213 43 HOH HOH A . H 4 HOH 14 214 103 HOH HOH A . H 4 HOH 15 215 12 HOH HOH A . H 4 HOH 16 216 4 HOH HOH A . H 4 HOH 17 217 9 HOH HOH A . H 4 HOH 18 218 2 HOH HOH A . H 4 HOH 19 219 44 HOH HOH A . H 4 HOH 20 220 6 HOH HOH A . H 4 HOH 21 221 8 HOH HOH A . H 4 HOH 22 222 45 HOH HOH A . H 4 HOH 23 223 17 HOH HOH A . H 4 HOH 24 224 56 HOH HOH A . H 4 HOH 25 225 1 HOH HOH A . H 4 HOH 26 226 40 HOH HOH A . H 4 HOH 27 227 16 HOH HOH A . H 4 HOH 28 228 33 HOH HOH A . H 4 HOH 29 229 42 HOH HOH A . H 4 HOH 30 230 32 HOH HOH A . H 4 HOH 31 231 53 HOH HOH A . H 4 HOH 32 232 37 HOH HOH A . H 4 HOH 33 233 54 HOH HOH A . H 4 HOH 34 234 49 HOH HOH A . H 4 HOH 35 235 94 HOH HOH A . H 4 HOH 36 236 41 HOH HOH A . H 4 HOH 37 237 105 HOH HOH A . H 4 HOH 38 238 118 HOH HOH A . H 4 HOH 39 239 63 HOH HOH A . H 4 HOH 40 240 58 HOH HOH A . H 4 HOH 41 241 48 HOH HOH A . I 4 HOH 1 201 91 HOH HOH B . I 4 HOH 2 202 75 HOH HOH B . I 4 HOH 3 203 81 HOH HOH B . I 4 HOH 4 204 11 HOH HOH B . I 4 HOH 5 205 20 HOH HOH B . I 4 HOH 6 206 79 HOH HOH B . I 4 HOH 7 207 21 HOH HOH B . I 4 HOH 8 208 114 HOH HOH B . I 4 HOH 9 209 19 HOH HOH B . I 4 HOH 10 210 77 HOH HOH B . I 4 HOH 11 211 18 HOH HOH B . I 4 HOH 12 212 68 HOH HOH B . I 4 HOH 13 213 110 HOH HOH B . I 4 HOH 14 214 66 HOH HOH B . I 4 HOH 15 215 22 HOH HOH B . I 4 HOH 16 216 112 HOH HOH B . I 4 HOH 17 217 78 HOH HOH B . I 4 HOH 18 218 67 HOH HOH B . I 4 HOH 19 219 74 HOH HOH B . I 4 HOH 20 220 69 HOH HOH B . I 4 HOH 21 221 80 HOH HOH B . I 4 HOH 22 222 108 HOH HOH B . I 4 HOH 23 223 107 HOH HOH B . I 4 HOH 24 224 82 HOH HOH B . I 4 HOH 25 225 113 HOH HOH B . I 4 HOH 26 226 109 HOH HOH B . I 4 HOH 27 227 64 HOH HOH B . J 4 HOH 1 201 71 HOH HOH C . J 4 HOH 2 202 92 HOH HOH C . J 4 HOH 3 203 24 HOH HOH C . J 4 HOH 4 204 15 HOH HOH C . J 4 HOH 5 205 27 HOH HOH C . J 4 HOH 6 206 28 HOH HOH C . J 4 HOH 7 207 119 HOH HOH C . J 4 HOH 8 208 35 HOH HOH C . J 4 HOH 9 209 70 HOH HOH C . J 4 HOH 10 210 60 HOH HOH C . J 4 HOH 11 211 62 HOH HOH C . J 4 HOH 12 212 121 HOH HOH C . J 4 HOH 13 213 55 HOH HOH C . J 4 HOH 14 214 65 HOH HOH C . J 4 HOH 15 215 100 HOH HOH C . J 4 HOH 16 216 115 HOH HOH C . J 4 HOH 17 217 116 HOH HOH C . J 4 HOH 18 218 59 HOH HOH C . J 4 HOH 19 219 88 HOH HOH C . J 4 HOH 20 220 61 HOH HOH C . J 4 HOH 21 221 34 HOH HOH C . J 4 HOH 22 222 117 HOH HOH C . J 4 HOH 23 223 83 HOH HOH C . J 4 HOH 24 224 52 HOH HOH C . J 4 HOH 25 225 31 HOH HOH C . J 4 HOH 26 226 97 HOH HOH C . J 4 HOH 27 227 25 HOH HOH C . J 4 HOH 28 228 90 HOH HOH C . J 4 HOH 29 229 104 HOH HOH C . J 4 HOH 30 230 111 HOH HOH C . J 4 HOH 31 231 99 HOH HOH C . J 4 HOH 32 232 98 HOH HOH C . J 4 HOH 33 233 51 HOH HOH C . J 4 HOH 34 234 73 HOH HOH C . J 4 HOH 35 235 95 HOH HOH C . J 4 HOH 36 236 23 HOH HOH C . J 4 HOH 37 237 106 HOH HOH C . J 4 HOH 38 238 93 HOH HOH C . J 4 HOH 39 239 10 HOH HOH C . J 4 HOH 40 240 72 HOH HOH C . J 4 HOH 41 241 96 HOH HOH C . J 4 HOH 42 242 89 HOH HOH C . J 4 HOH 43 243 30 HOH HOH C . J 4 HOH 44 244 36 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 48 ? CG ? A LYS 52 CG 2 1 Y 1 A LYS 48 ? CD ? A LYS 52 CD 3 1 Y 1 A LYS 48 ? CE ? A LYS 52 CE 4 1 Y 1 A LYS 48 ? NZ ? A LYS 52 NZ 5 1 Y 1 A ARG 74 ? CG ? A ARG 78 CG 6 1 Y 1 A ARG 74 ? CD ? A ARG 78 CD 7 1 Y 1 A ARG 74 ? NE ? A ARG 78 NE 8 1 Y 1 A ARG 74 ? CZ ? A ARG 78 CZ 9 1 Y 1 A ARG 74 ? NH1 ? A ARG 78 NH1 10 1 Y 1 A ARG 74 ? NH2 ? A ARG 78 NH2 11 1 Y 1 B LEU 8 ? CG ? B LEU 12 CG 12 1 Y 1 B LEU 8 ? CD1 ? B LEU 12 CD1 13 1 Y 1 B LEU 8 ? CD2 ? B LEU 12 CD2 14 1 Y 1 B LYS 11 ? CG ? B LYS 15 CG 15 1 Y 1 B LYS 11 ? CD ? B LYS 15 CD 16 1 Y 1 B LYS 11 ? CE ? B LYS 15 CE 17 1 Y 1 B LYS 11 ? NZ ? B LYS 15 NZ 18 1 Y 1 C ARG 74 ? CG ? C ARG 78 CG 19 1 Y 1 C ARG 74 ? CD ? C ARG 78 CD 20 1 Y 1 C ARG 74 ? NE ? C ARG 78 NE 21 1 Y 1 C ARG 74 ? CZ ? C ARG 78 CZ 22 1 Y 1 C ARG 74 ? NH1 ? C ARG 78 NH1 23 1 Y 1 C ARG 74 ? NH2 ? C ARG 78 NH2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0073 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.entry_id 5M93 _cell.length_a 31.596 _cell.length_b 81.073 _cell.length_c 51.287 _cell.angle_alpha 90.00 _cell.angle_beta 105.72 _cell.angle_gamma 90.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5M93 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5M93 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.47 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 50.2 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M sodium acetate pH 4 - 5.5, 0.2M lithium sulfate and 30% PEG 8000' _exptl_crystal_grow.pdbx_pH_range 4-5.5 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 2M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-05-27 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00004 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.00004 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5M93 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.793 _reflns.d_resolution_low 49.37 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 22956 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.4 _reflns.pdbx_Rmerge_I_obs 0.1224 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.24 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.995 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.793 _reflns_shell.d_res_low 1.857 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.38 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 96 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.7956 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.535 _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5M93 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 21807 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.37 _refine.ls_d_res_high 1.793 _refine.ls_percent_reflns_obs 98.30 _refine.ls_R_factor_obs 0.19070 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18857 _refine.ls_R_factor_R_free 0.23104 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1147 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.922 _refine.B_iso_mean 19.991 _refine.aniso_B[1][1] -0.45 _refine.aniso_B[2][2] 1.41 _refine.aniso_B[3][3] -0.69 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.28 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 1UBQ _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.129 _refine.pdbx_overall_ESU_R_Free 0.127 _refine.overall_SU_ML 0.102 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.387 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 1789 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 112 _refine_hist.number_atoms_total 1929 _refine_hist.d_res_high 1.793 _refine_hist.d_res_low 49.37 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.019 0.019 ? 1861 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1840 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.038 2.013 ? 2524 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.897 3.000 ? 4270 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.828 5.000 ? 235 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.819 26.203 ? 79 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.986 15.000 ? 355 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.989 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.113 0.200 ? 309 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.021 ? 2053 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 360 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.929 1.740 ? 931 'X-RAY DIFFRACTION' ? r_mcbond_other 1.925 1.740 ? 930 'X-RAY DIFFRACTION' ? r_mcangle_it 2.874 2.594 ? 1163 'X-RAY DIFFRACTION' ? r_mcangle_other 2.873 2.595 ? 1164 'X-RAY DIFFRACTION' ? r_scbond_it 3.257 2.165 ? 930 'X-RAY DIFFRACTION' ? r_scbond_other 3.244 2.144 ? 922 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 5.053 3.071 ? 1348 'X-RAY DIFFRACTION' ? r_long_range_B_refined 7.165 14.308 ? 1993 'X-RAY DIFFRACTION' ? r_long_range_B_other 7.164 14.325 ? 1994 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.793 _refine_ls_shell.d_res_low 1.840 _refine_ls_shell.number_reflns_R_work 1586 _refine_ls_shell.R_factor_R_work 0.311 _refine_ls_shell.percent_reflns_obs 96.03 _refine_ls_shell.R_factor_R_free 0.338 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 83 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 5M93 _struct.title 'Crystal structure of SdeA-modified ubiquitin.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5M93 _struct_keywords.text 'Post translational modification, Ubiquitin, Phosphoribosylation, SdeA, signaling protein' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 2 ? G N N 3 ? H N N 4 ? I N N 4 ? J N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UBB_HUMAN _struct_ref.pdbx_db_accession P0CG47 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG _struct_ref.pdbx_align_begin 76 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5M93 A 4 ? 80 ? P0CG47 76 ? 152 ? 0 76 2 1 5M93 B 4 ? 80 ? P0CG47 76 ? 152 ? 0 76 3 1 5M93 C 4 ? 80 ? P0CG47 76 ? 152 ? 0 76 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5M93 GLY A 1 ? UNP P0CG47 ? ? 'expression tag' -3 1 1 5M93 PRO A 2 ? UNP P0CG47 ? ? 'expression tag' -2 2 1 5M93 LEU A 3 ? UNP P0CG47 ? ? 'expression tag' -1 3 1 5M93 SER A 5 ? UNP P0CG47 MET 77 conflict 1 4 2 5M93 GLY B 1 ? UNP P0CG47 ? ? 'expression tag' -3 5 2 5M93 PRO B 2 ? UNP P0CG47 ? ? 'expression tag' -2 6 2 5M93 LEU B 3 ? UNP P0CG47 ? ? 'expression tag' -1 7 2 5M93 SER B 5 ? UNP P0CG47 MET 77 conflict 1 8 3 5M93 GLY C 1 ? UNP P0CG47 ? ? 'expression tag' -3 9 3 5M93 PRO C 2 ? UNP P0CG47 ? ? 'expression tag' -2 10 3 5M93 LEU C 3 ? UNP P0CG47 ? ? 'expression tag' -1 11 3 5M93 SER C 5 ? UNP P0CG47 MET 77 conflict 1 12 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 3 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,H 2 1 B,E,F,I 3 1 C,G,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 26 ? GLY A 39 ? THR A 22 GLY A 35 1 ? 14 HELX_P HELX_P2 AA2 PRO A 41 ? ASP A 43 ? PRO A 37 ASP A 39 5 ? 3 HELX_P HELX_P3 AA3 THR B 26 ? GLY B 39 ? THR B 22 GLY B 35 1 ? 14 HELX_P HELX_P4 AA4 PRO B 41 ? ASP B 43 ? PRO B 37 ASP B 39 5 ? 3 HELX_P HELX_P5 AA5 LEU B 60 ? ASN B 64 ? LEU B 56 ASN B 60 5 ? 5 HELX_P HELX_P6 AA6 THR C 26 ? GLY C 39 ? THR C 22 GLY C 35 1 ? 14 HELX_P HELX_P7 AA7 PRO C 41 ? ASP C 43 ? PRO C 37 ASP C 39 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? B ARG 46 NH1 ? ? ? 1_555 E RIB . C1 ? ? B ARG 42 B RIB 101 1_555 ? ? ? ? ? ? ? 1.476 ? ? covale2 covale one ? C ARG 46 NH1 ? ? ? 1_555 G RIB . C1 ? ? C ARG 42 C RIB 101 1_555 ? ? ? ? ? ? ? 1.485 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 16 ? GLU A 20 ? THR A 12 GLU A 16 AA1 2 GLN A 6 ? THR A 11 ? GLN A 2 THR A 7 AA1 3 THR A 70 ? LEU A 75 ? THR A 66 LEU A 71 AA1 4 GLN A 45 ? PHE A 49 ? GLN A 41 PHE A 45 AA1 5 LYS A 52 ? GLN A 53 ? LYS A 48 GLN A 49 AA2 1 THR B 16 ? VAL B 21 ? THR B 12 VAL B 17 AA2 2 SER B 5 ? LYS B 10 ? SER B 1 LYS B 6 AA2 3 THR B 70 ? LEU B 75 ? THR B 66 LEU B 71 AA2 4 GLN B 45 ? PHE B 49 ? GLN B 41 PHE B 45 AA2 5 LYS B 52 ? GLN B 53 ? LYS B 48 GLN B 49 AA3 1 THR C 16 ? VAL C 21 ? THR C 12 VAL C 17 AA3 2 SER C 5 ? LYS C 10 ? SER C 1 LYS C 6 AA3 3 THR C 70 ? LEU C 75 ? THR C 66 LEU C 71 AA3 4 GLN C 45 ? PHE C 49 ? GLN C 41 PHE C 45 AA3 5 LYS C 52 ? GLN C 53 ? LYS C 48 GLN C 49 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LEU A 19 ? O LEU A 15 N ILE A 7 ? N ILE A 3 AA1 2 3 N PHE A 8 ? N PHE A 4 O LEU A 71 ? O LEU A 67 AA1 3 4 O VAL A 74 ? O VAL A 70 N ARG A 46 ? N ARG A 42 AA1 4 5 N PHE A 49 ? N PHE A 45 O LYS A 52 ? O LYS A 48 AA2 1 2 O LEU B 19 ? O LEU B 15 N ILE B 7 ? N ILE B 3 AA2 2 3 N PHE B 8 ? N PHE B 4 O LEU B 71 ? O LEU B 67 AA2 3 4 O HIS B 72 ? O HIS B 68 N ILE B 48 ? N ILE B 44 AA2 4 5 N PHE B 49 ? N PHE B 45 O LYS B 52 ? O LYS B 48 AA3 1 2 O VAL C 21 ? O VAL C 17 N SER C 5 ? N SER C 1 AA3 2 3 N PHE C 8 ? N PHE C 4 O LEU C 71 ? O LEU C 67 AA3 3 4 O HIS C 72 ? O HIS C 68 N ILE C 48 ? N ILE C 44 AA3 4 5 N PHE C 49 ? N PHE C 45 O LYS C 52 ? O LYS C 48 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 235 ? ? O A HOH 240 ? ? 1.46 2 1 O C HOH 201 ? ? O C HOH 206 ? ? 1.60 3 1 O C HOH 214 ? ? O C HOH 218 ? ? 1.65 4 1 O A HOH 203 ? ? O A HOH 222 ? ? 1.67 5 1 O C HOH 210 ? ? O C HOH 238 ? ? 1.67 6 1 O C HOH 220 ? ? O C HOH 241 ? ? 1.90 7 1 O C HOH 240 ? ? O C HOH 242 ? ? 1.95 8 1 O B HOH 221 ? ? O B HOH 225 ? ? 2.01 9 1 O C HOH 210 ? ? O C HOH 241 ? ? 2.06 10 1 O A HOH 231 ? ? O A HOH 238 ? ? 2.09 11 1 O C HOH 238 ? ? O C HOH 241 ? ? 2.12 12 1 O1 A SO4 101 ? ? O A HOH 201 ? ? 2.17 13 1 O B GLY 35 ? ? O B HOH 201 ? ? 2.18 14 1 O C GLY 35 ? ? O C HOH 201 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O B HOH 202 ? ? 1_555 O C HOH 202 ? ? 1_556 1.56 2 1 O B HOH 201 ? ? 1_555 O C HOH 209 ? ? 1_656 1.59 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB C ASP 52 ? ? CG C ASP 52 ? ? OD1 C ASP 52 ? ? 125.43 118.30 7.13 0.90 N 2 1 CB C ASP 52 ? ? CG C ASP 52 ? ? OD2 C ASP 52 ? ? 112.82 118.30 -5.48 0.90 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 74 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 179.53 _pdbx_validate_torsion.psi -41.25 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A PRO -2 ? A PRO 2 3 1 Y 1 A LEU -1 ? A LEU 3 4 1 Y 1 A GLY 0 ? A GLY 4 5 1 Y 1 A GLY 76 ? A GLY 80 6 1 Y 1 B ARG 74 ? B ARG 78 7 1 Y 1 B GLY 75 ? B GLY 79 8 1 Y 1 B GLY 76 ? B GLY 80 9 1 Y 1 C GLY 75 ? C GLY 79 10 1 Y 1 C GLY 76 ? C GLY 80 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 PRO N N N N 259 PRO CA C N S 260 PRO C C N N 261 PRO O O N N 262 PRO CB C N N 263 PRO CG C N N 264 PRO CD C N N 265 PRO OXT O N N 266 PRO H H N N 267 PRO HA H N N 268 PRO HB2 H N N 269 PRO HB3 H N N 270 PRO HG2 H N N 271 PRO HG3 H N N 272 PRO HD2 H N N 273 PRO HD3 H N N 274 PRO HXT H N N 275 RIB O5 O N N 276 RIB C5 C N N 277 RIB C4 C N R 278 RIB O4 O N N 279 RIB C3 C N S 280 RIB O3 O N N 281 RIB C2 C N R 282 RIB O2 O N N 283 RIB C1 C N S 284 RIB O1 O N N 285 RIB HO5 H N N 286 RIB H51 H N N 287 RIB H52 H N N 288 RIB H4 H N N 289 RIB H3 H N N 290 RIB HO3 H N N 291 RIB H2 H N N 292 RIB HO2 H N N 293 RIB H1 H N N 294 RIB HO1 H N N 295 SER N N N N 296 SER CA C N S 297 SER C C N N 298 SER O O N N 299 SER CB C N N 300 SER OG O N N 301 SER OXT O N N 302 SER H H N N 303 SER H2 H N N 304 SER HA H N N 305 SER HB2 H N N 306 SER HB3 H N N 307 SER HG H N N 308 SER HXT H N N 309 SO4 S S N N 310 SO4 O1 O N N 311 SO4 O2 O N N 312 SO4 O3 O N N 313 SO4 O4 O N N 314 THR N N N N 315 THR CA C N S 316 THR C C N N 317 THR O O N N 318 THR CB C N R 319 THR OG1 O N N 320 THR CG2 C N N 321 THR OXT O N N 322 THR H H N N 323 THR H2 H N N 324 THR HA H N N 325 THR HB H N N 326 THR HG1 H N N 327 THR HG21 H N N 328 THR HG22 H N N 329 THR HG23 H N N 330 THR HXT H N N 331 TYR N N N N 332 TYR CA C N S 333 TYR C C N N 334 TYR O O N N 335 TYR CB C N N 336 TYR CG C Y N 337 TYR CD1 C Y N 338 TYR CD2 C Y N 339 TYR CE1 C Y N 340 TYR CE2 C Y N 341 TYR CZ C Y N 342 TYR OH O N N 343 TYR OXT O N N 344 TYR H H N N 345 TYR H2 H N N 346 TYR HA H N N 347 TYR HB2 H N N 348 TYR HB3 H N N 349 TYR HD1 H N N 350 TYR HD2 H N N 351 TYR HE1 H N N 352 TYR HE2 H N N 353 TYR HH H N N 354 TYR HXT H N N 355 VAL N N N N 356 VAL CA C N S 357 VAL C C N N 358 VAL O O N N 359 VAL CB C N N 360 VAL CG1 C N N 361 VAL CG2 C N N 362 VAL OXT O N N 363 VAL H H N N 364 VAL H2 H N N 365 VAL HA H N N 366 VAL HB H N N 367 VAL HG11 H N N 368 VAL HG12 H N N 369 VAL HG13 H N N 370 VAL HG21 H N N 371 VAL HG22 H N N 372 VAL HG23 H N N 373 VAL HXT H N N 374 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 RIB O5 C5 sing N N 264 RIB O5 HO5 sing N N 265 RIB C5 C4 sing N N 266 RIB C5 H51 sing N N 267 RIB C5 H52 sing N N 268 RIB C4 O4 sing N N 269 RIB C4 C3 sing N N 270 RIB C4 H4 sing N N 271 RIB O4 C1 sing N N 272 RIB C3 O3 sing N N 273 RIB C3 C2 sing N N 274 RIB C3 H3 sing N N 275 RIB O3 HO3 sing N N 276 RIB C2 O2 sing N N 277 RIB C2 C1 sing N N 278 RIB C2 H2 sing N N 279 RIB O2 HO2 sing N N 280 RIB C1 O1 sing N N 281 RIB C1 H1 sing N N 282 RIB O1 HO1 sing N N 283 SER N CA sing N N 284 SER N H sing N N 285 SER N H2 sing N N 286 SER CA C sing N N 287 SER CA CB sing N N 288 SER CA HA sing N N 289 SER C O doub N N 290 SER C OXT sing N N 291 SER CB OG sing N N 292 SER CB HB2 sing N N 293 SER CB HB3 sing N N 294 SER OG HG sing N N 295 SER OXT HXT sing N N 296 SO4 S O1 doub N N 297 SO4 S O2 doub N N 298 SO4 S O3 sing N N 299 SO4 S O4 sing N N 300 THR N CA sing N N 301 THR N H sing N N 302 THR N H2 sing N N 303 THR CA C sing N N 304 THR CA CB sing N N 305 THR CA HA sing N N 306 THR C O doub N N 307 THR C OXT sing N N 308 THR CB OG1 sing N N 309 THR CB CG2 sing N N 310 THR CB HB sing N N 311 THR OG1 HG1 sing N N 312 THR CG2 HG21 sing N N 313 THR CG2 HG22 sing N N 314 THR CG2 HG23 sing N N 315 THR OXT HXT sing N N 316 TYR N CA sing N N 317 TYR N H sing N N 318 TYR N H2 sing N N 319 TYR CA C sing N N 320 TYR CA CB sing N N 321 TYR CA HA sing N N 322 TYR C O doub N N 323 TYR C OXT sing N N 324 TYR CB CG sing N N 325 TYR CB HB2 sing N N 326 TYR CB HB3 sing N N 327 TYR CG CD1 doub Y N 328 TYR CG CD2 sing Y N 329 TYR CD1 CE1 sing Y N 330 TYR CD1 HD1 sing N N 331 TYR CD2 CE2 doub Y N 332 TYR CD2 HD2 sing N N 333 TYR CE1 CZ doub Y N 334 TYR CE1 HE1 sing N N 335 TYR CE2 CZ sing Y N 336 TYR CE2 HE2 sing N N 337 TYR CZ OH sing N N 338 TYR OH HH sing N N 339 TYR OXT HXT sing N N 340 VAL N CA sing N N 341 VAL N H sing N N 342 VAL N H2 sing N N 343 VAL CA C sing N N 344 VAL CA CB sing N N 345 VAL CA HA sing N N 346 VAL C O doub N N 347 VAL C OXT sing N N 348 VAL CB CG1 sing N N 349 VAL CB CG2 sing N N 350 VAL CB HB sing N N 351 VAL CG1 HG11 sing N N 352 VAL CG1 HG12 sing N N 353 VAL CG1 HG13 sing N N 354 VAL CG2 HG21 sing N N 355 VAL CG2 HG22 sing N N 356 VAL CG2 HG23 sing N N 357 VAL OXT HXT sing N N 358 # _pdbx_audit_support.funding_organization 'LOEWE program Ubiquitin Networks (Ub-Net' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number 'SPP 1580' _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1UBQ _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5M93 _atom_sites.fract_transf_matrix[1][1] 0.031650 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008910 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012335 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020256 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_