HEADER FLUORESCENT PROTEIN 03-NOV-16 5MA6 TITLE GFP-BINDING DARPIN 3G124NC COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 3G124NC; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_COMMON: JELLYFISH; SOURCE 4 ORGANISM_TAXID: 6100; SOURCE 5 GENE: GFP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS GREEN FLUORESCENT PROTEIN, DESIGNED ANKYRIN PROTEIN, FLUORESCENT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.HANSEN,J.STUEBER,P.ERNST,A.KOCH,D.BOJAR,A.BATYUK,A.PLUECKTHUN REVDAT 2 06-NOV-24 5MA6 1 REMARK REVDAT 1 06-DEC-17 5MA6 0 JRNL AUTH S.HANSEN,J.C.STUBER,P.ERNST,A.KOCH,D.BOJAR,A.BATYUK, JRNL AUTH 2 A.PLUCKTHUN JRNL TITL DESIGN AND APPLICATIONS OF A CLAMP FOR GREEN FLUORESCENT JRNL TITL 2 PROTEIN WITH PICOMOLAR AFFINITY. JRNL REF SCI REP V. 7 16292 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 29176615 JRNL DOI 10.1038/S41598-017-15711-Z REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 28037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1426 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2001 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.4210 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.4380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3002 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61000 REMARK 3 B22 (A**2) : 0.61000 REMARK 3 B33 (A**2) : -1.98000 REMARK 3 B12 (A**2) : 0.31000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.213 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.158 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3087 ; 0.024 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2923 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4181 ; 2.559 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6729 ; 1.296 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 382 ; 8.778 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;37.681 ;25.616 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 511 ;19.899 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.187 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.148 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3504 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 682 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1537 ; 4.764 ; 5.986 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1536 ; 4.764 ; 5.985 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1916 ; 6.950 ; 8.969 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1917 ; 6.949 ; 8.970 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1550 ; 5.522 ; 6.624 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1550 ; 5.517 ; 6.624 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2266 ; 8.173 ; 9.711 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3305 ;12.561 ;71.287 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3306 ;12.559 ;71.310 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 230 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7359 27.4020 -7.7277 REMARK 3 T TENSOR REMARK 3 T11: 0.1846 T22: 0.4768 REMARK 3 T33: 0.0579 T12: -0.0195 REMARK 3 T13: 0.0136 T23: 0.1574 REMARK 3 L TENSOR REMARK 3 L11: 0.8099 L22: 0.6901 REMARK 3 L33: 0.0413 L12: -0.1968 REMARK 3 L13: 0.1119 L23: 0.0911 REMARK 3 S TENSOR REMARK 3 S11: -0.0451 S12: -0.4322 S13: -0.1309 REMARK 3 S21: -0.1346 S22: 0.0886 S23: -0.0298 REMARK 3 S31: -0.0372 S32: -0.0908 S33: -0.0435 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 168 REMARK 3 ORIGIN FOR THE GROUP (A): -12.4409 28.1165 -29.1573 REMARK 3 T TENSOR REMARK 3 T11: 0.2476 T22: 0.2950 REMARK 3 T33: 0.1330 T12: -0.0454 REMARK 3 T13: 0.0028 T23: 0.1356 REMARK 3 L TENSOR REMARK 3 L11: 1.1916 L22: 0.5512 REMARK 3 L33: 1.6560 L12: -0.4881 REMARK 3 L13: -0.7891 L23: -0.2513 REMARK 3 S TENSOR REMARK 3 S11: 0.1008 S12: -0.0508 S13: -0.2213 REMARK 3 S21: -0.1263 S22: 0.0054 S23: 0.1721 REMARK 3 S31: -0.0710 S32: -0.1088 S33: -0.1062 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MA6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002169. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00002 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29482 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 37.30 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 40.70 REMARK 200 R MERGE FOR SHELL (I) : 8.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA-ACETATE PH 5.5, 0.5M KH2PO4, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 144.24000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 288.48000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 216.36000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 360.60000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.12000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 144.24000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 288.48000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 360.60000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 216.36000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 72.12000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 LEU A 231 REMARK 465 GLY A 232 REMARK 465 MET A 233 REMARK 465 ASP A 234 REMARK 465 GLU A 235 REMARK 465 LEU A 236 REMARK 465 TYR A 237 REMARK 465 LYS A 238 REMARK 465 GLN A 239 REMARK 465 ALA A 240 REMARK 465 GLY B 9 REMARK 465 ALA B 169 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 136 O HOH A 401 1.66 REMARK 500 ND2 ASN A 135 OE1 GLN A 177 1.96 REMARK 500 O ASP B 45 O2 PO4 A 303 2.06 REMARK 500 O THR A 62 NH1 ARG A 96 2.11 REMARK 500 OD1 ASN A 149 O HOH A 402 2.14 REMARK 500 O ASN A 135 O GLY A 138 2.16 REMARK 500 O2 CRO A 66 NE2 GLN A 69 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 126 OH TYR A 200 8665 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 94 CG GLU B 94 CD 0.128 REMARK 500 GLU B 94 CD GLU B 94 OE2 0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 36 CB - CG - OD2 ANGL. DEV. = -9.1 DEGREES REMARK 500 PRO A 58 C - N - CA ANGL. DEV. = -11.0 DEGREES REMARK 500 ARG A 73 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 GLU A 90 OE1 - CD - OE2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG A 96 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 ARG A 96 CA - CB - CG ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG A 96 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 96 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 109 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 LEU A 119 CA - CB - CG ANGL. DEV. = -17.6 DEGREES REMARK 500 GLY A 138 N - CA - C ANGL. DEV. = -19.1 DEGREES REMARK 500 ASP A 197 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG B 109 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 109 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 50.93 32.79 REMARK 500 LEU A 137 -21.64 93.32 REMARK 500 PHE A 165 171.64 176.66 REMARK 500 ASN A 212 30.53 -96.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 143 ASN A 144 -144.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 202 DBREF 5MA6 A 2 238 UNP P42212 GFP_AEQVI 2 238 DBREF 5MA6 B 9 169 PDB 5MA6 5MA6 9 169 SEQADV 5MA6 GLY A -4 UNP P42212 EXPRESSION TAG SEQADV 5MA6 PRO A -3 UNP P42212 EXPRESSION TAG SEQADV 5MA6 GLY A -2 UNP P42212 EXPRESSION TAG SEQADV 5MA6 SER A -1 UNP P42212 EXPRESSION TAG SEQADV 5MA6 MET A 0 UNP P42212 EXPRESSION TAG SEQADV 5MA6 VAL A 1 UNP P42212 EXPRESSION TAG SEQADV 5MA6 LEU A 64 UNP P42212 PHE 64 CONFLICT SEQADV 5MA6 CRO A 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 5MA6 CRO A 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 5MA6 CRO A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 5MA6 LEU A 231 UNP P42212 HIS 231 CONFLICT SEQADV 5MA6 GLN A 239 UNP P42212 EXPRESSION TAG SEQADV 5MA6 ALA A 240 UNP P42212 EXPRESSION TAG SEQRES 1 A 243 GLY PRO GLY SER MET VAL SER LYS GLY GLU GLU LEU PHE SEQRES 2 A 243 THR GLY VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY ASP SEQRES 3 A 243 VAL ASN GLY HIS LYS PHE SER VAL SER GLY GLU GLY GLU SEQRES 4 A 243 GLY ASP ALA THR TYR GLY LYS LEU THR LEU LYS PHE ILE SEQRES 5 A 243 CYS THR THR GLY LYS LEU PRO VAL PRO TRP PRO THR LEU SEQRES 6 A 243 VAL THR THR LEU CRO VAL GLN CYS PHE SER ARG TYR PRO SEQRES 7 A 243 ASP HIS MET LYS GLN HIS ASP PHE PHE LYS SER ALA MET SEQRES 8 A 243 PRO GLU GLY TYR VAL GLN GLU ARG THR ILE PHE PHE LYS SEQRES 9 A 243 ASP ASP GLY ASN TYR LYS THR ARG ALA GLU VAL LYS PHE SEQRES 10 A 243 GLU GLY ASP THR LEU VAL ASN ARG ILE GLU LEU LYS GLY SEQRES 11 A 243 ILE ASP PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS LYS SEQRES 12 A 243 LEU GLU TYR ASN TYR ASN SER HIS ASN VAL TYR ILE MET SEQRES 13 A 243 ALA ASP LYS GLN LYS ASN GLY ILE LYS VAL ASN PHE LYS SEQRES 14 A 243 ILE ARG HIS ASN ILE GLU ASP GLY SER VAL GLN LEU ALA SEQRES 15 A 243 ASP HIS TYR GLN GLN ASN THR PRO ILE GLY ASP GLY PRO SEQRES 16 A 243 VAL LEU LEU PRO ASP ASN HIS TYR LEU SER THR GLN SER SEQRES 17 A 243 ALA LEU SER LYS ASP PRO ASN GLU LYS ARG ASP HIS MET SEQRES 18 A 243 VAL LEU LEU GLU PHE VAL THR ALA ALA GLY ILE THR LEU SEQRES 19 A 243 GLY MET ASP GLU LEU TYR LYS GLN ALA SEQRES 1 B 161 GLY PRO GLY SER ASP LEU GLY LYS LYS LEU LEU GLU ALA SEQRES 2 B 161 ALA ARG ALA GLY GLN ASP ASP GLU VAL ARG ILE LEU MET SEQRES 3 B 161 ALA ASN GLY ALA ASP VAL ASN ALA ALA ASP ASP VAL GLY SEQRES 4 B 161 VAL THR PRO LEU HIS LEU ALA ALA GLN ARG GLY HIS LEU SEQRES 5 B 161 GLU ILE VAL GLU VAL LEU LEU LYS TYR GLY ALA ASP VAL SEQRES 6 B 161 ASN ALA ALA ASP LEU TRP GLY GLN THR PRO LEU HIS LEU SEQRES 7 B 161 ALA ALA THR ALA GLY HIS LEU GLU ILE VAL GLU VAL LEU SEQRES 8 B 161 LEU LYS ASN GLY ALA ASP VAL ASN ALA ARG ASP ASN ILE SEQRES 9 B 161 GLY HIS THR PRO LEU HIS LEU ALA ALA TRP ALA GLY HIS SEQRES 10 B 161 LEU GLU ILE VAL GLU VAL LEU LEU LYS TYR GLY ALA ASP SEQRES 11 B 161 VAL ASN ALA GLN ASP LYS PHE GLY LYS THR PRO PHE ASP SEQRES 12 B 161 LEU ALA ILE ASP ASN GLY ASN GLU ASP ILE ALA GLU VAL SEQRES 13 B 161 LEU GLN LYS ALA ALA MODRES 5MA6 CRO A 66 GLY CHROMOPHORE HET CRO A 66 22 HET PO4 A 301 5 HET PO4 A 302 5 HET PO4 A 303 5 HET EDO A 304 4 HET PO4 B 201 5 HET PO4 B 202 5 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN CRO PEPTIDE DERIVED CHROMOPHORE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CRO C15 H17 N3 O5 FORMUL 3 PO4 5(O4 P 3-) FORMUL 6 EDO C2 H6 O2 FORMUL 9 HOH *45(H2 O) HELIX 1 AA1 GLU A 5 THR A 9 5 5 HELIX 2 AA2 PRO A 56 VAL A 61 1 6 HELIX 3 AA3 VAL A 68 SER A 72 5 5 HELIX 4 AA4 PRO A 75 HIS A 81 5 7 HELIX 5 AA5 ASP A 82 ALA A 87 1 6 HELIX 6 AA6 LYS A 156 ASN A 159 5 4 HELIX 7 AA7 ASP B 13 ALA B 24 1 12 HELIX 8 AA8 GLN B 26 ASN B 36 1 11 HELIX 9 AA9 THR B 49 ARG B 57 1 9 HELIX 10 AB1 HIS B 59 TYR B 69 1 11 HELIX 11 AB2 THR B 82 GLY B 91 1 10 HELIX 12 AB3 HIS B 92 ASN B 102 1 11 HELIX 13 AB4 THR B 115 ALA B 123 1 9 HELIX 14 AB5 HIS B 125 TYR B 135 1 11 HELIX 15 AB6 THR B 148 GLY B 157 1 10 HELIX 16 AB7 ASN B 158 LYS B 167 1 10 SHEET 1 AA112 VAL A 12 VAL A 22 0 SHEET 2 AA112 HIS A 25 ASP A 36 -1 O HIS A 25 N VAL A 22 SHEET 3 AA112 LYS A 41 CYS A 48 -1 O ILE A 47 N SER A 30 SHEET 4 AA112 HIS A 217 ILE A 229 -1 O LEU A 220 N LEU A 44 SHEET 5 AA112 HIS A 199 SER A 208 -1 N SER A 202 O THR A 225 SHEET 6 AA112 ASN A 149 ASP A 155 -1 N ILE A 152 O HIS A 199 SHEET 7 AA112 GLY A 160 ASN A 170 -1 O GLY A 160 N ASP A 155 SHEET 8 AA112 VAL A 176 PRO A 187 -1 O HIS A 181 N PHE A 165 SHEET 9 AA112 TYR A 92 PHE A 100 -1 N PHE A 99 O ASP A 180 SHEET 10 AA112 ASN A 105 GLU A 115 -1 O VAL A 112 N TYR A 92 SHEET 11 AA112 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 AA112 VAL A 12 VAL A 22 1 N GLU A 17 O ILE A 123 LINK C LEU A 64 N1 CRO A 66 1555 1555 1.31 LINK C3 CRO A 66 N VAL A 68 1555 1555 1.31 CISPEP 1 MET A 88 PRO A 89 0 17.32 SITE 1 AC1 4 PRO A 75 ASP A 76 HIS A 77 ASP A 129 SITE 1 AC2 5 VAL A 55 PRO A 56 TRP A 57 PRO A 58 SITE 2 AC2 5 HIS A 139 SITE 1 AC3 5 ASP A 210 ASN A 212 ASP B 45 VAL B 46 SITE 2 AC3 5 GLY B 47 SITE 1 AC4 1 TYR A 200 SITE 1 AC5 5 ASP B 27 HIS B 59 LEU B 60 GLU B 61 SITE 2 AC5 5 ILE B 62 SITE 1 AC6 6 GLN A 204 PHE A 223 HIS B 114 TRP B 122 SITE 2 AC6 6 LEU B 152 HOH B 308 CRYST1 70.310 70.310 432.720 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014223 0.008211 0.000000 0.00000 SCALE2 0.000000 0.016423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002311 0.00000