HEADER FLUORESCENT PROTEIN 03-NOV-16 5MA6
TITLE GFP-BINDING DARPIN 3G124NC
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES;
COMPND 5 MOL_ID: 2;
COMPND 6 MOLECULE: 3G124NC;
COMPND 7 CHAIN: B;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA;
SOURCE 3 ORGANISM_COMMON: JELLYFISH;
SOURCE 4 ORGANISM_TAXID: 6100;
SOURCE 5 GENE: GFP;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333;
SOURCE 8 MOL_ID: 2;
SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;
SOURCE 10 ORGANISM_TAXID: 32630;
SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12;
SOURCE 12 EXPRESSION_SYSTEM_TAXID: 83333
KEYWDS GREEN FLUORESCENT PROTEIN, DESIGNED ANKYRIN PROTEIN, FLUORESCENT
KEYWDS 2 PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR S.HANSEN,J.STUEBER,P.ERNST,A.KOCH,D.BOJAR,A.BATYUK,A.PLUECKTHUN
REVDAT 2 06-NOV-24 5MA6 1 REMARK
REVDAT 1 06-DEC-17 5MA6 0
JRNL AUTH S.HANSEN,J.C.STUBER,P.ERNST,A.KOCH,D.BOJAR,A.BATYUK,
JRNL AUTH 2 A.PLUCKTHUN
JRNL TITL DESIGN AND APPLICATIONS OF A CLAMP FOR GREEN FLUORESCENT
JRNL TITL 2 PROTEIN WITH PICOMOLAR AFFINITY.
JRNL REF SCI REP V. 7 16292 2017
JRNL REFN ESSN 2045-2322
JRNL PMID 29176615
JRNL DOI 10.1038/S41598-017-15711-Z
REMARK 2
REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0155
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2
REMARK 3 NUMBER OF REFLECTIONS : 28037
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.207
REMARK 3 R VALUE (WORKING SET) : 0.205
REMARK 3 FREE R VALUE : 0.241
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800
REMARK 3 FREE R VALUE TEST SET COUNT : 1426
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36
REMARK 3 REFLECTION IN BIN (WORKING SET) : 2001
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.69
REMARK 3 BIN R VALUE (WORKING SET) : 0.4210
REMARK 3 BIN FREE R VALUE SET COUNT : 102
REMARK 3 BIN FREE R VALUE : 0.4380
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3002
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 29
REMARK 3 SOLVENT ATOMS : 45
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.18
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.61000
REMARK 3 B22 (A**2) : 0.61000
REMARK 3 B33 (A**2) : -1.98000
REMARK 3 B12 (A**2) : 0.31000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.213
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.158
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3087 ; 0.024 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 2923 ; 0.003 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4181 ; 2.559 ; 1.969
REMARK 3 BOND ANGLES OTHERS (DEGREES): 6729 ; 1.296 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 382 ; 8.778 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;37.681 ;25.616
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 511 ;19.899 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.187 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.148 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3504 ; 0.012 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 682 ; 0.003 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1537 ; 4.764 ; 5.986
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1536 ; 4.764 ; 5.985
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1916 ; 6.950 ; 8.969
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1917 ; 6.949 ; 8.970
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1550 ; 5.522 ; 6.624
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1550 ; 5.517 ; 6.624
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2266 ; 8.173 ; 9.711
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3305 ;12.561 ;71.287
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3306 ;12.559 ;71.310
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 2 A 230
REMARK 3 ORIGIN FOR THE GROUP (A): 4.7359 27.4020 -7.7277
REMARK 3 T TENSOR
REMARK 3 T11: 0.1846 T22: 0.4768
REMARK 3 T33: 0.0579 T12: -0.0195
REMARK 3 T13: 0.0136 T23: 0.1574
REMARK 3 L TENSOR
REMARK 3 L11: 0.8099 L22: 0.6901
REMARK 3 L33: 0.0413 L12: -0.1968
REMARK 3 L13: 0.1119 L23: 0.0911
REMARK 3 S TENSOR
REMARK 3 S11: -0.0451 S12: -0.4322 S13: -0.1309
REMARK 3 S21: -0.1346 S22: 0.0886 S23: -0.0298
REMARK 3 S31: -0.0372 S32: -0.0908 S33: -0.0435
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 10 B 168
REMARK 3 ORIGIN FOR THE GROUP (A): -12.4409 28.1165 -29.1573
REMARK 3 T TENSOR
REMARK 3 T11: 0.2476 T22: 0.2950
REMARK 3 T33: 0.1330 T12: -0.0454
REMARK 3 T13: 0.0028 T23: 0.1356
REMARK 3 L TENSOR
REMARK 3 L11: 1.1916 L22: 0.5512
REMARK 3 L33: 1.6560 L12: -0.4881
REMARK 3 L13: -0.7891 L23: -0.2513
REMARK 3 S TENSOR
REMARK 3 S11: 0.1008 S12: -0.0508 S13: -0.2213
REMARK 3 S21: -0.1263 S22: 0.0054 S23: 0.1721
REMARK 3 S31: -0.0710 S32: -0.1088 S33: -0.1062
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 5MA6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-NOV-16.
REMARK 100 THE DEPOSITION ID IS D_1200002169.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 18-SEP-14
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X06SA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.00002
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29482
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300
REMARK 200 RESOLUTION RANGE LOW (A) : 50.010
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7
REMARK 200 DATA REDUNDANCY : 37.30
REMARK 200 R MERGE (I) : 0.14800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.5500
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36
REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5
REMARK 200 DATA REDUNDANCY IN SHELL : 40.70
REMARK 200 R MERGE FOR SHELL (I) : 8.52000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.680
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 64.61
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA-ACETATE PH 5.5, 0.5M KH2PO4,
REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+5/6
REMARK 290 6555 X-Y,X,Z+1/6
REMARK 290 7555 Y,X,-Z+1/3
REMARK 290 8555 X-Y,-Y,-Z
REMARK 290 9555 -X,-X+Y,-Z+2/3
REMARK 290 10555 -Y,-X,-Z+5/6
REMARK 290 11555 -X+Y,Y,-Z+1/2
REMARK 290 12555 X,X-Y,-Z+1/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 144.24000
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 288.48000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 216.36000
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 360.60000
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.12000
REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 144.24000
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 288.48000
REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 360.60000
REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 216.36000
REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 72.12000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2940 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 16250 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A -4
REMARK 465 PRO A -3
REMARK 465 GLY A -2
REMARK 465 SER A -1
REMARK 465 MET A 0
REMARK 465 VAL A 1
REMARK 465 LEU A 231
REMARK 465 GLY A 232
REMARK 465 MET A 233
REMARK 465 ASP A 234
REMARK 465 GLU A 235
REMARK 465 LEU A 236
REMARK 465 TYR A 237
REMARK 465 LYS A 238
REMARK 465 GLN A 239
REMARK 465 ALA A 240
REMARK 465 GLY B 9
REMARK 465 ALA B 169
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O ILE A 136 O HOH A 401 1.66
REMARK 500 ND2 ASN A 135 OE1 GLN A 177 1.96
REMARK 500 O ASP B 45 O2 PO4 A 303 2.06
REMARK 500 O THR A 62 NH1 ARG A 96 2.11
REMARK 500 OD1 ASN A 149 O HOH A 402 2.14
REMARK 500 O ASN A 135 O GLY A 138 2.16
REMARK 500 O2 CRO A 66 NE2 GLN A 69 2.17
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 NZ LYS A 126 OH TYR A 200 8665 2.06
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 GLU B 94 CG GLU B 94 CD 0.128
REMARK 500 GLU B 94 CD GLU B 94 OE2 0.109
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ASP A 36 CB - CG - OD2 ANGL. DEV. = -9.1 DEGREES
REMARK 500 PRO A 58 C - N - CA ANGL. DEV. = -11.0 DEGREES
REMARK 500 ARG A 73 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES
REMARK 500 GLU A 90 OE1 - CD - OE2 ANGL. DEV. = -7.3 DEGREES
REMARK 500 ARG A 96 CB - CA - C ANGL. DEV. = 12.8 DEGREES
REMARK 500 ARG A 96 CA - CB - CG ANGL. DEV. = 13.5 DEGREES
REMARK 500 ARG A 96 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES
REMARK 500 ARG A 96 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES
REMARK 500 ARG A 109 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES
REMARK 500 LEU A 119 CA - CB - CG ANGL. DEV. = -17.6 DEGREES
REMARK 500 GLY A 138 N - CA - C ANGL. DEV. = -19.1 DEGREES
REMARK 500 ASP A 197 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES
REMARK 500 ARG B 109 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES
REMARK 500 ARG B 109 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 23 50.93 32.79
REMARK 500 LEU A 137 -21.64 93.32
REMARK 500 PHE A 165 171.64 176.66
REMARK 500 ASN A 212 30.53 -96.51
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 TYR A 143 ASN A 144 -144.77
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 202
DBREF 5MA6 A 2 238 UNP P42212 GFP_AEQVI 2 238
DBREF 5MA6 B 9 169 PDB 5MA6 5MA6 9 169
SEQADV 5MA6 GLY A -4 UNP P42212 EXPRESSION TAG
SEQADV 5MA6 PRO A -3 UNP P42212 EXPRESSION TAG
SEQADV 5MA6 GLY A -2 UNP P42212 EXPRESSION TAG
SEQADV 5MA6 SER A -1 UNP P42212 EXPRESSION TAG
SEQADV 5MA6 MET A 0 UNP P42212 EXPRESSION TAG
SEQADV 5MA6 VAL A 1 UNP P42212 EXPRESSION TAG
SEQADV 5MA6 LEU A 64 UNP P42212 PHE 64 CONFLICT
SEQADV 5MA6 CRO A 66 UNP P42212 SER 65 CHROMOPHORE
SEQADV 5MA6 CRO A 66 UNP P42212 TYR 66 CHROMOPHORE
SEQADV 5MA6 CRO A 66 UNP P42212 GLY 67 CHROMOPHORE
SEQADV 5MA6 LEU A 231 UNP P42212 HIS 231 CONFLICT
SEQADV 5MA6 GLN A 239 UNP P42212 EXPRESSION TAG
SEQADV 5MA6 ALA A 240 UNP P42212 EXPRESSION TAG
SEQRES 1 A 243 GLY PRO GLY SER MET VAL SER LYS GLY GLU GLU LEU PHE
SEQRES 2 A 243 THR GLY VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY ASP
SEQRES 3 A 243 VAL ASN GLY HIS LYS PHE SER VAL SER GLY GLU GLY GLU
SEQRES 4 A 243 GLY ASP ALA THR TYR GLY LYS LEU THR LEU LYS PHE ILE
SEQRES 5 A 243 CYS THR THR GLY LYS LEU PRO VAL PRO TRP PRO THR LEU
SEQRES 6 A 243 VAL THR THR LEU CRO VAL GLN CYS PHE SER ARG TYR PRO
SEQRES 7 A 243 ASP HIS MET LYS GLN HIS ASP PHE PHE LYS SER ALA MET
SEQRES 8 A 243 PRO GLU GLY TYR VAL GLN GLU ARG THR ILE PHE PHE LYS
SEQRES 9 A 243 ASP ASP GLY ASN TYR LYS THR ARG ALA GLU VAL LYS PHE
SEQRES 10 A 243 GLU GLY ASP THR LEU VAL ASN ARG ILE GLU LEU LYS GLY
SEQRES 11 A 243 ILE ASP PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS LYS
SEQRES 12 A 243 LEU GLU TYR ASN TYR ASN SER HIS ASN VAL TYR ILE MET
SEQRES 13 A 243 ALA ASP LYS GLN LYS ASN GLY ILE LYS VAL ASN PHE LYS
SEQRES 14 A 243 ILE ARG HIS ASN ILE GLU ASP GLY SER VAL GLN LEU ALA
SEQRES 15 A 243 ASP HIS TYR GLN GLN ASN THR PRO ILE GLY ASP GLY PRO
SEQRES 16 A 243 VAL LEU LEU PRO ASP ASN HIS TYR LEU SER THR GLN SER
SEQRES 17 A 243 ALA LEU SER LYS ASP PRO ASN GLU LYS ARG ASP HIS MET
SEQRES 18 A 243 VAL LEU LEU GLU PHE VAL THR ALA ALA GLY ILE THR LEU
SEQRES 19 A 243 GLY MET ASP GLU LEU TYR LYS GLN ALA
SEQRES 1 B 161 GLY PRO GLY SER ASP LEU GLY LYS LYS LEU LEU GLU ALA
SEQRES 2 B 161 ALA ARG ALA GLY GLN ASP ASP GLU VAL ARG ILE LEU MET
SEQRES 3 B 161 ALA ASN GLY ALA ASP VAL ASN ALA ALA ASP ASP VAL GLY
SEQRES 4 B 161 VAL THR PRO LEU HIS LEU ALA ALA GLN ARG GLY HIS LEU
SEQRES 5 B 161 GLU ILE VAL GLU VAL LEU LEU LYS TYR GLY ALA ASP VAL
SEQRES 6 B 161 ASN ALA ALA ASP LEU TRP GLY GLN THR PRO LEU HIS LEU
SEQRES 7 B 161 ALA ALA THR ALA GLY HIS LEU GLU ILE VAL GLU VAL LEU
SEQRES 8 B 161 LEU LYS ASN GLY ALA ASP VAL ASN ALA ARG ASP ASN ILE
SEQRES 9 B 161 GLY HIS THR PRO LEU HIS LEU ALA ALA TRP ALA GLY HIS
SEQRES 10 B 161 LEU GLU ILE VAL GLU VAL LEU LEU LYS TYR GLY ALA ASP
SEQRES 11 B 161 VAL ASN ALA GLN ASP LYS PHE GLY LYS THR PRO PHE ASP
SEQRES 12 B 161 LEU ALA ILE ASP ASN GLY ASN GLU ASP ILE ALA GLU VAL
SEQRES 13 B 161 LEU GLN LYS ALA ALA
MODRES 5MA6 CRO A 66 GLY CHROMOPHORE
HET CRO A 66 22
HET PO4 A 301 5
HET PO4 A 302 5
HET PO4 A 303 5
HET EDO A 304 4
HET PO4 B 201 5
HET PO4 B 202 5
HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-
HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-
HETNAM 3 CRO YL}ACETIC ACID
HETNAM PO4 PHOSPHATE ION
HETNAM EDO 1,2-ETHANEDIOL
HETSYN CRO PEPTIDE DERIVED CHROMOPHORE
HETSYN EDO ETHYLENE GLYCOL
FORMUL 1 CRO C15 H17 N3 O5
FORMUL 3 PO4 5(O4 P 3-)
FORMUL 6 EDO C2 H6 O2
FORMUL 9 HOH *45(H2 O)
HELIX 1 AA1 GLU A 5 THR A 9 5 5
HELIX 2 AA2 PRO A 56 VAL A 61 1 6
HELIX 3 AA3 VAL A 68 SER A 72 5 5
HELIX 4 AA4 PRO A 75 HIS A 81 5 7
HELIX 5 AA5 ASP A 82 ALA A 87 1 6
HELIX 6 AA6 LYS A 156 ASN A 159 5 4
HELIX 7 AA7 ASP B 13 ALA B 24 1 12
HELIX 8 AA8 GLN B 26 ASN B 36 1 11
HELIX 9 AA9 THR B 49 ARG B 57 1 9
HELIX 10 AB1 HIS B 59 TYR B 69 1 11
HELIX 11 AB2 THR B 82 GLY B 91 1 10
HELIX 12 AB3 HIS B 92 ASN B 102 1 11
HELIX 13 AB4 THR B 115 ALA B 123 1 9
HELIX 14 AB5 HIS B 125 TYR B 135 1 11
HELIX 15 AB6 THR B 148 GLY B 157 1 10
HELIX 16 AB7 ASN B 158 LYS B 167 1 10
SHEET 1 AA112 VAL A 12 VAL A 22 0
SHEET 2 AA112 HIS A 25 ASP A 36 -1 O HIS A 25 N VAL A 22
SHEET 3 AA112 LYS A 41 CYS A 48 -1 O ILE A 47 N SER A 30
SHEET 4 AA112 HIS A 217 ILE A 229 -1 O LEU A 220 N LEU A 44
SHEET 5 AA112 HIS A 199 SER A 208 -1 N SER A 202 O THR A 225
SHEET 6 AA112 ASN A 149 ASP A 155 -1 N ILE A 152 O HIS A 199
SHEET 7 AA112 GLY A 160 ASN A 170 -1 O GLY A 160 N ASP A 155
SHEET 8 AA112 VAL A 176 PRO A 187 -1 O HIS A 181 N PHE A 165
SHEET 9 AA112 TYR A 92 PHE A 100 -1 N PHE A 99 O ASP A 180
SHEET 10 AA112 ASN A 105 GLU A 115 -1 O VAL A 112 N TYR A 92
SHEET 11 AA112 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113
SHEET 12 AA112 VAL A 12 VAL A 22 1 N GLU A 17 O ILE A 123
LINK C LEU A 64 N1 CRO A 66 1555 1555 1.31
LINK C3 CRO A 66 N VAL A 68 1555 1555 1.31
CISPEP 1 MET A 88 PRO A 89 0 17.32
SITE 1 AC1 4 PRO A 75 ASP A 76 HIS A 77 ASP A 129
SITE 1 AC2 5 VAL A 55 PRO A 56 TRP A 57 PRO A 58
SITE 2 AC2 5 HIS A 139
SITE 1 AC3 5 ASP A 210 ASN A 212 ASP B 45 VAL B 46
SITE 2 AC3 5 GLY B 47
SITE 1 AC4 1 TYR A 200
SITE 1 AC5 5 ASP B 27 HIS B 59 LEU B 60 GLU B 61
SITE 2 AC5 5 ILE B 62
SITE 1 AC6 6 GLN A 204 PHE A 223 HIS B 114 TRP B 122
SITE 2 AC6 6 LEU B 152 HOH B 308
CRYST1 70.310 70.310 432.720 90.00 90.00 120.00 P 61 2 2 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014223 0.008211 0.000000 0.00000
SCALE2 0.000000 0.016423 0.000000 0.00000
SCALE3 0.000000 0.000000 0.002311 0.00000