data_5MBA # _entry.id 5MBA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5MBA WWPDB D_1000179737 # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 1992-07-15 _pdbx_database_PDB_obs_spr.pdb_id 5MBA _pdbx_database_PDB_obs_spr.replace_pdb_id 2MBA _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5MBA _pdbx_database_status.recvd_initial_deposition_date 1991-01-14 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bolognesi, M.' 1 'Onesti, S.' 2 'Gatti, G.' 3 'Coda, A.' 4 'Ascenzi, P.' 5 'Brunori, M.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Binding mode of azide to ferric Aplysia limacina myoglobin. Crystallographic analysis at 1.9 A resolution.' J.Mol.Recog. 4 1 6 1991 JMORE4 UK 0952-3499 0814 ? 1931125 10.1002/jmr.300040102 1 'Aplysia Limacina Myoglobin: Molecular Bases for Ligand Binding' 'Structure and Function of Invertebrate Oxygen Carriers' ? 161 ? 1991 ? ? 0-387-97585-3 0793 'Springer-Verlag, New York' ? ? 2 'Aplysia Limacina Myoglobin. Crystallographic Analysis at 1.6 Angstroms Resolution' J.Mol.Biol. 205 529 ? 1989 JMOBAK UK 0022-2836 0070 ? ? ? 3 'Crystal Structure of Ferric Aplysia Limacina Myoglobin at 2.0 Angstroms Resolution' J.Mol.Biol. 183 113 ? 1985 JMOBAK UK 0022-2836 0070 ? ? ? 4 'Reactivity of Ferric Aplysia and Sperm Whale Myoglobins Towards Imidazole. X-Ray and Binding Study' J.Mol.Biol. 158 305 ? 1982 JMOBAK UK 0022-2836 0070 ? ? ? 5 'The Structure of Aplysia Limacina Myoglobin at 3.6 Angstroms Resolution' 'Acta Crystallogr.,Sect.A (Supplement)' 34 62 ? 1978 ACACBN DK 0567-7394 108 ? ? ? 6 'The Crystal Structure of met-Myoglobin from Aplysia Limacina at 5 Angstroms Resolution' 'Acta Crystallogr.,Sect.B' 34 3658 ? 1978 ASBSDK DK 0108-7681 0622 ? ? ? 7 'Crystallization and Preliminary X-Ray Diffraction Studies on met-Myoglobin from Aplysia Limacina' J.Mol.Biol. 97 665 ? 1975 JMOBAK UK 0022-2836 0070 ? ? ? 8 'The Amino Acid Sequence of Myoglobin from the Mollusc Aplysia Limacina' 'Int.J.Pept.Protein Res.' 5 187 ? 1973 IJPPC3 DK 0367-8377 0215 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Mattevi, A.' 1 primary 'Gatti, G.' 2 primary 'Coda, A.' 3 primary 'Rizzi, M.' 4 primary 'Ascenzi, P.' 5 primary 'Brunori, M.' 6 primary 'Bolognesi, M.' 7 1 'Bolognesi, M.' 8 1 'Frigerio, F.' 9 1 'Lionetti, C.' 10 1 'Rizzi, M.' 11 1 'Ascenzi, P.' 12 1 'Brunori, M.' 13 2 'Bolognesi, M.' 14 2 'Onesti, S.' 15 2 'Gatti, G.' 16 2 'Coda, A.' 17 2 'Ascenzi, P.' 18 2 'Brunori, M.' 19 3 'Bolognesi, M.' 20 3 'Coda, A.' 21 3 'Gatti, G.' 22 3 'Ascenzi, P.' 23 3 'Brunori, M.' 24 4 'Bolognesi, M.' 25 4 'Cannillo, E.' 26 4 'Ascenzi, P.' 27 4 'Giacometti, G.M.' 28 4 'Merli, A.' 29 4 'Brunori, M.' 30 5 'Bolognesi, M.' 31 5 'Cannillo, E.' 32 5 'Oberti, R.' 33 5 'Rossi, G.' 34 5 'Ungaretti, L.' 35 6 'Ungaretti, L.' 36 6 'Bolognesi, M.' 37 6 'Cannillo, E.' 38 6 'Oberti, R.' 39 6 'Rossi, G.' 40 7 'Blundell, T.L.' 41 7 'Brunori, M.' 42 7 'Curti, B.' 43 7 'Bolognesi, M.' 44 7 'Coda, A.' 45 7 'Fumagalli, M.' 46 7 'Ungaretti, L.' 47 8 'Tentori, L.' 48 8 'Vivaldi, G.' 49 8 'Carta, S.' 50 8 'Marinucci, M.' 51 8 'Massa, A.' 52 8 'Antonini, E.' 53 8 'Brunori, M.' 54 # _cell.entry_id 5MBA _cell.length_a 52.980 _cell.length_b 70.700 _cell.length_c 32.500 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MBA _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man MYOGLOBIN 15349.438 1 ? ? ? ? 2 non-polymer syn 'AZIDE ION' 42.020 1 ? ? ? ? 3 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 1 ? ? ? ? 4 water nat water 18.015 126 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(ACE)SLSAAEADLAGKSWAPVFANKNANGLDFLVALFEKFPDSANFFADFKGKSVADIKASPKLRDVSSRIFTRLNEFV NNAANAGKMSAMLSQFAKEHVGFGVGSAQFENVRSMFPGFVASVAAPPAGADAAWTKLFGLIIDALKAAGA ; _entity_poly.pdbx_seq_one_letter_code_can ;XSLSAAEADLAGKSWAPVFANKNANGLDFLVALFEKFPDSANFFADFKGKSVADIKASPKLRDVSSRIFTRLNEFVNNAA NAGKMSAMLSQFAKEHVGFGVGSAQFENVRSMFPGFVASVAAPPAGADAAWTKLFGLIIDALKAAGA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 SER n 1 3 LEU n 1 4 SER n 1 5 ALA n 1 6 ALA n 1 7 GLU n 1 8 ALA n 1 9 ASP n 1 10 LEU n 1 11 ALA n 1 12 GLY n 1 13 LYS n 1 14 SER n 1 15 TRP n 1 16 ALA n 1 17 PRO n 1 18 VAL n 1 19 PHE n 1 20 ALA n 1 21 ASN n 1 22 LYS n 1 23 ASN n 1 24 ALA n 1 25 ASN n 1 26 GLY n 1 27 LEU n 1 28 ASP n 1 29 PHE n 1 30 LEU n 1 31 VAL n 1 32 ALA n 1 33 LEU n 1 34 PHE n 1 35 GLU n 1 36 LYS n 1 37 PHE n 1 38 PRO n 1 39 ASP n 1 40 SER n 1 41 ALA n 1 42 ASN n 1 43 PHE n 1 44 PHE n 1 45 ALA n 1 46 ASP n 1 47 PHE n 1 48 LYS n 1 49 GLY n 1 50 LYS n 1 51 SER n 1 52 VAL n 1 53 ALA n 1 54 ASP n 1 55 ILE n 1 56 LYS n 1 57 ALA n 1 58 SER n 1 59 PRO n 1 60 LYS n 1 61 LEU n 1 62 ARG n 1 63 ASP n 1 64 VAL n 1 65 SER n 1 66 SER n 1 67 ARG n 1 68 ILE n 1 69 PHE n 1 70 THR n 1 71 ARG n 1 72 LEU n 1 73 ASN n 1 74 GLU n 1 75 PHE n 1 76 VAL n 1 77 ASN n 1 78 ASN n 1 79 ALA n 1 80 ALA n 1 81 ASN n 1 82 ALA n 1 83 GLY n 1 84 LYS n 1 85 MET n 1 86 SER n 1 87 ALA n 1 88 MET n 1 89 LEU n 1 90 SER n 1 91 GLN n 1 92 PHE n 1 93 ALA n 1 94 LYS n 1 95 GLU n 1 96 HIS n 1 97 VAL n 1 98 GLY n 1 99 PHE n 1 100 GLY n 1 101 VAL n 1 102 GLY n 1 103 SER n 1 104 ALA n 1 105 GLN n 1 106 PHE n 1 107 GLU n 1 108 ASN n 1 109 VAL n 1 110 ARG n 1 111 SER n 1 112 MET n 1 113 PHE n 1 114 PRO n 1 115 GLY n 1 116 PHE n 1 117 VAL n 1 118 ALA n 1 119 SER n 1 120 VAL n 1 121 ALA n 1 122 ALA n 1 123 PRO n 1 124 PRO n 1 125 ALA n 1 126 GLY n 1 127 ALA n 1 128 ASP n 1 129 ALA n 1 130 ALA n 1 131 TRP n 1 132 THR n 1 133 LYS n 1 134 LEU n 1 135 PHE n 1 136 GLY n 1 137 LEU n 1 138 ILE n 1 139 ILE n 1 140 ASP n 1 141 ALA n 1 142 LEU n 1 143 LYS n 1 144 ALA n 1 145 ALA n 1 146 GLY n 1 147 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'slug sea hare' _entity_src_gen.gene_src_genus Aplysia _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Aplysia limacina' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6502 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GLB_APLLI _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P02210 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;SLSAAEADLAGKSWAPVFANKDANGDAFLVALFEKFPDSANFFADFKGKSVADIKASPKLRDVSSRIFTRLNEFVNNAAD AGKMSAMLSQFAKEHVGFGVGSAQFENVRSMFPGFVASVAAPPAGADAAWTKLFGLIIDALKAAGK ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5MBA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 146 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02210 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 145 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 145 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5MBA ASN A 23 ? UNP P02210 ASP 22 CONFLICT 22 1 1 5MBA LEU A 27 ? UNP P02210 ASP 26 CONFLICT 26 2 1 5MBA ASP A 28 ? UNP P02210 ALA 27 CONFLICT 27 3 1 5MBA ASN A 81 ? UNP P02210 ASP 80 CONFLICT 80 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 AZI non-polymer . 'AZIDE ION' ? 'N3 -1' 42.020 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 5MBA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_percent_sol 37.94 _exptl_crystal.description ? # _refine.entry_id 5MBA _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.9 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1390000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1086 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 126 _refine_hist.number_atoms_total 1258 _refine_hist.d_res_high 1.9 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? t_angle_deg 2.35 ? ? ? 'X-RAY DIFFRACTION' ? t_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? ? ? 'X-RAY DIFFRACTION' ? t_gen_planes ? ? ? ? 'X-RAY DIFFRACTION' ? t_it ? ? ? ? 'X-RAY DIFFRACTION' ? t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 5MBA _struct.title 'BINDING MODE OF AZIDE TO FERRIC APLYSIA LIMACINA MYOGLOBIN. CRYSTALLOGRAPHIC ANALYSIS AT 1.9 ANGSTROMS RESOLUTION' _struct.pdbx_descriptor 'MYOGLOBIN (MET) COMPLEX WITH AZIDE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5MBA _struct_keywords.pdbx_keywords 'OXYGEN STORAGE' _struct_keywords.text 'OXYGEN STORAGE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 A ALA A 5 ? ALA A 20 ? ALA A 4 ALA A 19 1 'BENT ALPHA-HELIX, RESIDUE 16' 16 HELX_P HELX_P2 B LYS A 22 ? LYS A 36 ? LYS A 21 LYS A 35 1 ? 15 HELX_P HELX_P3 C PRO A 38 ? PHE A 43 ? PRO A 37 PHE A 42 5 ? 6 HELX_P HELX_P4 D VAL A 52 ? LYS A 56 ? VAL A 51 LYS A 55 1 ? 5 HELX_P HELX_P5 E LYS A 60 ? ASN A 77 ? LYS A 59 ASN A 76 1 ? 18 HELX_P HELX_P6 F ALA A 82 ? GLY A 98 ? ALA A 81 GLY A 97 1 ? 17 HELX_P HELX_P7 G SER A 103 ? SER A 119 ? SER A 102 SER A 118 1 'BENT ALPHA-HELIX, RESIDUE 113' 17 HELX_P HELX_P8 H ALA A 127 ? ALA A 144 ? ALA A 126 ALA A 143 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ACE 1 C ? ? ? 1_555 A SER 2 N ? ? A ACE 0 A SER 1 1_555 ? ? ? ? ? ? ? 1.312 ? metalc1 metalc ? ? A HIS 96 NE2 ? ? ? 1_555 C HEM . FE ? ? A HIS 95 A HEM 148 1_555 ? ? ? ? ? ? ? 2.036 ? metalc2 metalc ? ? C HEM . FE ? ? ? 1_555 B AZI . N2 ? ? A HEM 148 A AZI 149 1_555 ? ? ? ? ? ? ? 2.921 ? metalc3 metalc ? ? C HEM . FE ? ? ? 1_555 B AZI . N3 ? ? A HEM 148 A AZI 149 1_555 ? ? ? ? ? ? ? 2.084 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE AZI A 149' AC2 Software ? ? ? ? 16 'BINDING SITE FOR RESIDUE HEM A 148' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 PHE A 44 ? PHE A 43 . ? 1_555 ? 2 AC1 4 ARG A 67 ? ARG A 66 . ? 1_555 ? 3 AC1 4 ILE A 68 ? ILE A 67 . ? 1_555 ? 4 AC1 4 HEM C . ? HEM A 148 . ? 1_555 ? 5 AC2 16 PHE A 29 ? PHE A 28 . ? 1_555 ? 6 AC2 16 SER A 40 ? SER A 39 . ? 1_555 ? 7 AC2 16 PHE A 43 ? PHE A 42 . ? 1_555 ? 8 AC2 16 PHE A 44 ? PHE A 43 . ? 1_555 ? 9 AC2 16 ARG A 67 ? ARG A 66 . ? 1_555 ? 10 AC2 16 ILE A 68 ? ILE A 67 . ? 1_555 ? 11 AC2 16 ARG A 71 ? ARG A 70 . ? 1_555 ? 12 AC2 16 PHE A 92 ? PHE A 91 . ? 1_555 ? 13 AC2 16 HIS A 96 ? HIS A 95 . ? 1_555 ? 14 AC2 16 PHE A 99 ? PHE A 98 . ? 1_555 ? 15 AC2 16 VAL A 101 ? VAL A 100 . ? 1_555 ? 16 AC2 16 GLN A 105 ? GLN A 104 . ? 1_555 ? 17 AC2 16 PHE A 106 ? PHE A 105 . ? 1_555 ? 18 AC2 16 AZI B . ? AZI A 149 . ? 1_555 ? 19 AC2 16 HOH D . ? HOH A 239 . ? 1_555 ? 20 AC2 16 HOH D . ? HOH A 253 . ? 1_555 ? # _database_PDB_matrix.entry_id 5MBA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5MBA _atom_sites.fract_transf_matrix[1][1] 0.018875 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014144 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030769 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 SER 2 1 1 SER SER A . n A 1 3 LEU 3 2 2 LEU LEU A . n A 1 4 SER 4 3 3 SER SER A . n A 1 5 ALA 5 4 4 ALA ALA A . n A 1 6 ALA 6 5 5 ALA ALA A . n A 1 7 GLU 7 6 6 GLU GLU A . n A 1 8 ALA 8 7 7 ALA ALA A . n A 1 9 ASP 9 8 8 ASP ASP A . n A 1 10 LEU 10 9 9 LEU LEU A . n A 1 11 ALA 11 10 10 ALA ALA A . n A 1 12 GLY 12 11 11 GLY GLY A . n A 1 13 LYS 13 12 12 LYS LYS A . n A 1 14 SER 14 13 13 SER SER A . n A 1 15 TRP 15 14 14 TRP TRP A . n A 1 16 ALA 16 15 15 ALA ALA A . n A 1 17 PRO 17 16 16 PRO PRO A . n A 1 18 VAL 18 17 17 VAL VAL A . n A 1 19 PHE 19 18 18 PHE PHE A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 ASN 21 20 20 ASN ASN A . n A 1 22 LYS 22 21 21 LYS LYS A . n A 1 23 ASN 23 22 22 ASN ASN A . n A 1 24 ALA 24 23 23 ALA ALA A . n A 1 25 ASN 25 24 24 ASN ASN A . n A 1 26 GLY 26 25 25 GLY GLY A . n A 1 27 LEU 27 26 26 LEU LEU A . n A 1 28 ASP 28 27 27 ASP ASP A . n A 1 29 PHE 29 28 28 PHE PHE A . n A 1 30 LEU 30 29 29 LEU LEU A . n A 1 31 VAL 31 30 30 VAL VAL A . n A 1 32 ALA 32 31 31 ALA ALA A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 PHE 34 33 33 PHE PHE A . n A 1 35 GLU 35 34 34 GLU GLU A . n A 1 36 LYS 36 35 35 LYS LYS A . n A 1 37 PHE 37 36 36 PHE PHE A . n A 1 38 PRO 38 37 37 PRO PRO A . n A 1 39 ASP 39 38 38 ASP ASP A . n A 1 40 SER 40 39 39 SER SER A . n A 1 41 ALA 41 40 40 ALA ALA A . n A 1 42 ASN 42 41 41 ASN ASN A . n A 1 43 PHE 43 42 42 PHE PHE A . n A 1 44 PHE 44 43 43 PHE PHE A . n A 1 45 ALA 45 44 44 ALA ALA A . n A 1 46 ASP 46 45 45 ASP ASP A . n A 1 47 PHE 47 46 46 PHE PHE A . n A 1 48 LYS 48 47 47 LYS LYS A . n A 1 49 GLY 49 48 48 GLY GLY A . n A 1 50 LYS 50 49 49 LYS LYS A . n A 1 51 SER 51 50 50 SER SER A . n A 1 52 VAL 52 51 51 VAL VAL A . n A 1 53 ALA 53 52 52 ALA ALA A . n A 1 54 ASP 54 53 53 ASP ASP A . n A 1 55 ILE 55 54 54 ILE ILE A . n A 1 56 LYS 56 55 55 LYS LYS A . n A 1 57 ALA 57 56 56 ALA ALA A . n A 1 58 SER 58 57 57 SER SER A . n A 1 59 PRO 59 58 58 PRO PRO A . n A 1 60 LYS 60 59 59 LYS LYS A . n A 1 61 LEU 61 60 60 LEU LEU A . n A 1 62 ARG 62 61 61 ARG ARG A . n A 1 63 ASP 63 62 62 ASP ASP A . n A 1 64 VAL 64 63 63 VAL VAL A . n A 1 65 SER 65 64 64 SER SER A . n A 1 66 SER 66 65 65 SER SER A . n A 1 67 ARG 67 66 66 ARG ARG A . n A 1 68 ILE 68 67 67 ILE ILE A . n A 1 69 PHE 69 68 68 PHE PHE A . n A 1 70 THR 70 69 69 THR THR A . n A 1 71 ARG 71 70 70 ARG ARG A . n A 1 72 LEU 72 71 71 LEU LEU A . n A 1 73 ASN 73 72 72 ASN ASN A . n A 1 74 GLU 74 73 73 GLU GLU A . n A 1 75 PHE 75 74 74 PHE PHE A . n A 1 76 VAL 76 75 75 VAL VAL A . n A 1 77 ASN 77 76 76 ASN ASN A . n A 1 78 ASN 78 77 77 ASN ASN A . n A 1 79 ALA 79 78 78 ALA ALA A . n A 1 80 ALA 80 79 79 ALA ALA A . n A 1 81 ASN 81 80 80 ASN ASN A . n A 1 82 ALA 82 81 81 ALA ALA A . n A 1 83 GLY 83 82 82 GLY GLY A . n A 1 84 LYS 84 83 83 LYS LYS A . n A 1 85 MET 85 84 84 MET MET A . n A 1 86 SER 86 85 85 SER SER A . n A 1 87 ALA 87 86 86 ALA ALA A . n A 1 88 MET 88 87 87 MET MET A . n A 1 89 LEU 89 88 88 LEU LEU A . n A 1 90 SER 90 89 89 SER SER A . n A 1 91 GLN 91 90 90 GLN GLN A . n A 1 92 PHE 92 91 91 PHE PHE A . n A 1 93 ALA 93 92 92 ALA ALA A . n A 1 94 LYS 94 93 93 LYS LYS A . n A 1 95 GLU 95 94 94 GLU GLU A . n A 1 96 HIS 96 95 95 HIS HIS A . n A 1 97 VAL 97 96 96 VAL VAL A . n A 1 98 GLY 98 97 97 GLY GLY A . n A 1 99 PHE 99 98 98 PHE PHE A . n A 1 100 GLY 100 99 99 GLY GLY A . n A 1 101 VAL 101 100 100 VAL VAL A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 SER 103 102 102 SER SER A . n A 1 104 ALA 104 103 103 ALA ALA A . n A 1 105 GLN 105 104 104 GLN GLN A . n A 1 106 PHE 106 105 105 PHE PHE A . n A 1 107 GLU 107 106 106 GLU GLU A . n A 1 108 ASN 108 107 107 ASN ASN A . n A 1 109 VAL 109 108 108 VAL VAL A . n A 1 110 ARG 110 109 109 ARG ARG A . n A 1 111 SER 111 110 110 SER SER A . n A 1 112 MET 112 111 111 MET MET A . n A 1 113 PHE 113 112 112 PHE PHE A . n A 1 114 PRO 114 113 113 PRO PRO A . n A 1 115 GLY 115 114 114 GLY GLY A . n A 1 116 PHE 116 115 115 PHE PHE A . n A 1 117 VAL 117 116 116 VAL VAL A . n A 1 118 ALA 118 117 117 ALA ALA A . n A 1 119 SER 119 118 118 SER SER A . n A 1 120 VAL 120 119 119 VAL VAL A . n A 1 121 ALA 121 120 120 ALA ALA A . n A 1 122 ALA 122 121 121 ALA ALA A . n A 1 123 PRO 123 122 122 PRO PRO A . n A 1 124 PRO 124 123 123 PRO PRO A . n A 1 125 ALA 125 124 124 ALA ALA A . n A 1 126 GLY 126 125 125 GLY GLY A . n A 1 127 ALA 127 126 126 ALA ALA A . n A 1 128 ASP 128 127 127 ASP ASP A . n A 1 129 ALA 129 128 128 ALA ALA A . n A 1 130 ALA 130 129 129 ALA ALA A . n A 1 131 TRP 131 130 130 TRP TRP A . n A 1 132 THR 132 131 131 THR THR A . n A 1 133 LYS 133 132 132 LYS LYS A . n A 1 134 LEU 134 133 133 LEU LEU A . n A 1 135 PHE 135 134 134 PHE PHE A . n A 1 136 GLY 136 135 135 GLY GLY A . n A 1 137 LEU 137 136 136 LEU LEU A . n A 1 138 ILE 138 137 137 ILE ILE A . n A 1 139 ILE 139 138 138 ILE ILE A . n A 1 140 ASP 140 139 139 ASP ASP A . n A 1 141 ALA 141 140 140 ALA ALA A . n A 1 142 LEU 142 141 141 LEU LEU A . n A 1 143 LYS 143 142 142 LYS LYS A . n A 1 144 ALA 144 143 143 ALA ALA A . n A 1 145 ALA 145 144 144 ALA ALA A . n A 1 146 GLY 146 145 145 GLY GLY A . n A 1 147 ALA 147 146 146 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AZI 1 149 149 AZI AZI A . C 3 HEM 1 148 148 HEM HEM A . D 4 HOH 1 150 150 HOH HOH A . D 4 HOH 2 151 151 HOH HOH A . D 4 HOH 3 152 152 HOH HOH A . D 4 HOH 4 153 153 HOH HOH A . D 4 HOH 5 154 154 HOH HOH A . D 4 HOH 6 155 155 HOH HOH A . D 4 HOH 7 156 156 HOH HOH A . D 4 HOH 8 157 157 HOH HOH A . D 4 HOH 9 158 158 HOH HOH A . D 4 HOH 10 159 159 HOH HOH A . D 4 HOH 11 160 160 HOH HOH A . D 4 HOH 12 161 161 HOH HOH A . D 4 HOH 13 162 162 HOH HOH A . D 4 HOH 14 163 163 HOH HOH A . D 4 HOH 15 164 164 HOH HOH A . D 4 HOH 16 165 165 HOH HOH A . D 4 HOH 17 166 166 HOH HOH A . D 4 HOH 18 167 167 HOH HOH A . D 4 HOH 19 168 168 HOH HOH A . D 4 HOH 20 169 169 HOH HOH A . D 4 HOH 21 170 170 HOH HOH A . D 4 HOH 22 171 171 HOH HOH A . D 4 HOH 23 172 172 HOH HOH A . D 4 HOH 24 173 173 HOH HOH A . D 4 HOH 25 174 174 HOH HOH A . D 4 HOH 26 175 175 HOH HOH A . D 4 HOH 27 176 176 HOH HOH A . D 4 HOH 28 177 177 HOH HOH A . D 4 HOH 29 178 178 HOH HOH A . D 4 HOH 30 179 179 HOH HOH A . D 4 HOH 31 180 180 HOH HOH A . D 4 HOH 32 181 181 HOH HOH A . D 4 HOH 33 182 182 HOH HOH A . D 4 HOH 34 183 183 HOH HOH A . D 4 HOH 35 184 184 HOH HOH A . D 4 HOH 36 185 185 HOH HOH A . D 4 HOH 37 186 186 HOH HOH A . D 4 HOH 38 187 187 HOH HOH A . D 4 HOH 39 188 188 HOH HOH A . D 4 HOH 40 189 189 HOH HOH A . D 4 HOH 41 190 190 HOH HOH A . D 4 HOH 42 191 191 HOH HOH A . D 4 HOH 43 192 192 HOH HOH A . D 4 HOH 44 193 193 HOH HOH A . D 4 HOH 45 194 194 HOH HOH A . D 4 HOH 46 195 195 HOH HOH A . D 4 HOH 47 196 196 HOH HOH A . D 4 HOH 48 197 197 HOH HOH A . D 4 HOH 49 198 198 HOH HOH A . D 4 HOH 50 199 199 HOH HOH A . D 4 HOH 51 200 200 HOH HOH A . D 4 HOH 52 201 201 HOH HOH A . D 4 HOH 53 202 202 HOH HOH A . D 4 HOH 54 203 203 HOH HOH A . D 4 HOH 55 204 204 HOH HOH A . D 4 HOH 56 205 205 HOH HOH A . D 4 HOH 57 206 206 HOH HOH A . D 4 HOH 58 207 207 HOH HOH A . D 4 HOH 59 208 208 HOH HOH A . D 4 HOH 60 209 209 HOH HOH A . D 4 HOH 61 210 210 HOH HOH A . D 4 HOH 62 211 211 HOH HOH A . D 4 HOH 63 212 212 HOH HOH A . D 4 HOH 64 213 213 HOH HOH A . D 4 HOH 65 214 214 HOH HOH A . D 4 HOH 66 215 215 HOH HOH A . D 4 HOH 67 216 216 HOH HOH A . D 4 HOH 68 217 217 HOH HOH A . D 4 HOH 69 218 218 HOH HOH A . D 4 HOH 70 219 219 HOH HOH A . D 4 HOH 71 220 220 HOH HOH A . D 4 HOH 72 221 221 HOH HOH A . D 4 HOH 73 222 222 HOH HOH A . D 4 HOH 74 223 223 HOH HOH A . D 4 HOH 75 224 224 HOH HOH A . D 4 HOH 76 225 225 HOH HOH A . D 4 HOH 77 226 226 HOH HOH A . D 4 HOH 78 227 227 HOH HOH A . D 4 HOH 79 228 228 HOH HOH A . D 4 HOH 80 229 229 HOH HOH A . D 4 HOH 81 230 230 HOH HOH A . D 4 HOH 82 231 231 HOH HOH A . D 4 HOH 83 232 232 HOH HOH A . D 4 HOH 84 233 233 HOH HOH A . D 4 HOH 85 234 234 HOH HOH A . D 4 HOH 86 235 235 HOH HOH A . D 4 HOH 87 236 236 HOH HOH A . D 4 HOH 88 237 237 HOH HOH A . D 4 HOH 89 238 238 HOH HOH A . D 4 HOH 90 239 239 HOH HOH A . D 4 HOH 91 240 240 HOH HOH A . D 4 HOH 92 241 241 HOH HOH A . D 4 HOH 93 242 242 HOH HOH A . D 4 HOH 94 243 243 HOH HOH A . D 4 HOH 95 244 244 HOH HOH A . D 4 HOH 96 245 245 HOH HOH A . D 4 HOH 97 246 246 HOH HOH A . D 4 HOH 98 247 247 HOH HOH A . D 4 HOH 99 248 248 HOH HOH A . D 4 HOH 100 249 249 HOH HOH A . D 4 HOH 101 250 250 HOH HOH A . D 4 HOH 102 251 251 HOH HOH A . D 4 HOH 103 252 252 HOH HOH A . D 4 HOH 104 253 253 HOH HOH A . D 4 HOH 105 254 254 HOH HOH A . D 4 HOH 106 255 255 HOH HOH A . D 4 HOH 107 256 256 HOH HOH A . D 4 HOH 108 257 257 HOH HOH A . D 4 HOH 109 258 258 HOH HOH A . D 4 HOH 110 259 259 HOH HOH A . D 4 HOH 111 260 260 HOH HOH A . D 4 HOH 112 261 261 HOH HOH A . D 4 HOH 113 262 262 HOH HOH A . D 4 HOH 114 263 263 HOH HOH A . D 4 HOH 115 264 264 HOH HOH A . D 4 HOH 116 265 265 HOH HOH A . D 4 HOH 117 266 266 HOH HOH A . D 4 HOH 118 267 267 HOH HOH A . D 4 HOH 119 268 268 HOH HOH A . D 4 HOH 120 269 269 HOH HOH A . D 4 HOH 121 270 270 HOH HOH A . D 4 HOH 122 271 271 HOH HOH A . D 4 HOH 123 272 272 HOH HOH A . D 4 HOH 124 273 273 HOH HOH A . D 4 HOH 125 274 274 HOH HOH A . D 4 HOH 126 275 275 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 96 ? A HIS 95 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 NA ? C HEM . ? A HEM 148 ? 1_555 87.9 ? 2 NE2 ? A HIS 96 ? A HIS 95 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 NB ? C HEM . ? A HEM 148 ? 1_555 96.0 ? 3 NA ? C HEM . ? A HEM 148 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 NB ? C HEM . ? A HEM 148 ? 1_555 95.8 ? 4 NE2 ? A HIS 96 ? A HIS 95 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 NC ? C HEM . ? A HEM 148 ? 1_555 93.3 ? 5 NA ? C HEM . ? A HEM 148 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 NC ? C HEM . ? A HEM 148 ? 1_555 177.4 ? 6 NB ? C HEM . ? A HEM 148 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 NC ? C HEM . ? A HEM 148 ? 1_555 86.4 ? 7 NE2 ? A HIS 96 ? A HIS 95 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 ND ? C HEM . ? A HEM 148 ? 1_555 91.3 ? 8 NA ? C HEM . ? A HEM 148 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 ND ? C HEM . ? A HEM 148 ? 1_555 84.6 ? 9 NB ? C HEM . ? A HEM 148 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 ND ? C HEM . ? A HEM 148 ? 1_555 172.7 ? 10 NC ? C HEM . ? A HEM 148 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 ND ? C HEM . ? A HEM 148 ? 1_555 93.0 ? 11 NE2 ? A HIS 96 ? A HIS 95 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 N2 ? B AZI . ? A AZI 149 ? 1_555 149.7 ? 12 NA ? C HEM . ? A HEM 148 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 N2 ? B AZI . ? A AZI 149 ? 1_555 65.7 ? 13 NB ? C HEM . ? A HEM 148 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 N2 ? B AZI . ? A AZI 149 ? 1_555 100.9 ? 14 NC ? C HEM . ? A HEM 148 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 N2 ? B AZI . ? A AZI 149 ? 1_555 112.6 ? 15 ND ? C HEM . ? A HEM 148 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 N2 ? B AZI . ? A AZI 149 ? 1_555 72.7 ? 16 NE2 ? A HIS 96 ? A HIS 95 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 N3 ? B AZI . ? A AZI 149 ? 1_555 169.1 ? 17 NA ? C HEM . ? A HEM 148 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 N3 ? B AZI . ? A AZI 149 ? 1_555 85.3 ? 18 NB ? C HEM . ? A HEM 148 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 N3 ? B AZI . ? A AZI 149 ? 1_555 93.2 ? 19 NC ? C HEM . ? A HEM 148 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 N3 ? B AZI . ? A AZI 149 ? 1_555 93.2 ? 20 ND ? C HEM . ? A HEM 148 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 N3 ? B AZI . ? A AZI 149 ? 1_555 79.6 ? 21 N2 ? B AZI . ? A AZI 149 ? 1_555 FE ? C HEM . ? A HEM 148 ? 1_555 N3 ? B AZI . ? A AZI 149 ? 1_555 20.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1992-07-15 2 'Structure model' 1 1 2008-03-25 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # _software.name TNT _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 5MBA _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;AZIDE ION IS BOUND TO THE HEME IRON AT THE DISTAL SITE AND TRIGGERS A LARGE CONFORMATIONAL CHANGE IN THE SIDE CHAIN OF RESIDUE ARG 66. A HYDROGEN BOND OCCURS BETWEEN AZIDE ATOM N1 AND NE1 ARG 66. THIS CONFORMATIONAL CHANGE AT RESIDUE ARG 66 BECAME EVIDENT ONLY IN THE LATER STAGES OF REFINEMENT. THE SIDE CHAIN OF ARG 66 IS NOT FULLY OCCUPIED BEYOND THE CB ATOM. ; _pdbx_entry_details.sequence_details ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 185 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 271 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_433 _pdbx_validate_symm_contact.dist 1.07 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 8 ? ? CG A ASP 8 ? ? OD2 A ASP 8 ? ? 124.35 118.30 6.05 0.90 N 2 1 CB A PHE 33 ? ? CG A PHE 33 ? ? CD1 A PHE 33 ? ? 125.01 120.80 4.21 0.70 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 12 ? CD ? A LYS 13 CD 2 1 Y 0 A LYS 12 ? CE ? A LYS 13 CE 3 1 Y 0 A LYS 12 ? NZ ? A LYS 13 NZ 4 1 Y 0 A LYS 21 ? NZ ? A LYS 22 NZ 5 1 Y 0 A ASP 27 ? CG ? A ASP 28 CG 6 1 Y 0 A ASP 27 ? OD1 ? A ASP 28 OD1 7 1 Y 0 A ASP 27 ? OD2 ? A ASP 28 OD2 8 1 Y 0 A LYS 35 ? CD ? A LYS 36 CD 9 1 Y 0 A LYS 35 ? CE ? A LYS 36 CE 10 1 Y 0 A LYS 35 ? NZ ? A LYS 36 NZ 11 1 Y 0 A LYS 47 ? CG ? A LYS 48 CG 12 1 Y 0 A LYS 47 ? CD ? A LYS 48 CD 13 1 Y 0 A LYS 47 ? CE ? A LYS 48 CE 14 1 Y 0 A LYS 47 ? NZ ? A LYS 48 NZ 15 1 Y 0 A LYS 49 ? CE ? A LYS 50 CE 16 1 Y 0 A LYS 49 ? NZ ? A LYS 50 NZ 17 1 Y 0 A LYS 55 ? NZ ? A LYS 56 NZ 18 1 Y 0 A LYS 83 ? NZ ? A LYS 84 NZ 19 1 Y 0 A GLY 145 ? C ? A GLY 146 C 20 1 Y 0 A ALA 146 ? OXT ? A ALA 147 OXT # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'AZIDE ION' AZI 3 'PROTOPORPHYRIN IX CONTAINING FE' HEM 4 water HOH #