HEADER HYDROLASE 08-NOV-16 5MBM TITLE CATHEPSIN B IN COMPLEX WITH DARPIN 8H6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 78-333; COMPND 5 SYNONYM: APP SECRETASE,APPS,CATHEPSIN B1; COMPND 6 EC: 3.4.22.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DARPIN 8H6; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTSB, CPSB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEASE, DARPIN, COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.TURK,L.KRAMER,M.RENKO,B.TURK REVDAT 2 20-FEB-19 5MBM 1 REMARK LINK REVDAT 1 20-DEC-17 5MBM 0 JRNL AUTH D.TURK,L.KRAMER JRNL TITL CATHEPSIN B IN COMPLEX WITH DARPIN 8H6 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MAIN 2016 REMARK 3 AUTHORS : TURK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NONE REMARK 3 FREE R VALUE TEST SET SELECTION : ALL REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 25128 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 953 REMARK 3 BIN R VALUE (WORKING SET) : 0.4422 REMARK 3 BIN FREE R VALUE : 0.4645 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 100.0 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 953 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6356 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.47400 REMARK 3 B22 (A**2) : 3.10000 REMARK 3 B33 (A**2) : -5.57400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FREE KICK REFINEMENT TARGET WAS USED IN REMARK 3 COMBINATION WITH NCS AND SECONDARY STRUCTURE HYDROGEN BONDS REMARK 3 RESTRAINTS REMARK 4 REMARK 4 5MBM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002001. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918007 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 2016 REMARK 200 DATA SCALING SOFTWARE : XDS 2016 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25129 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.760 REMARK 200 RESOLUTION RANGE LOW (A) : 46.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.17000 REMARK 200 R SYM (I) : 0.18000 REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 1.01000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: CATHEPSIN B AND ANKIRIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0,1 M NA-CITRATE 15% PEG6000, PH 4.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 50.72500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 100.76000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.72500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 100.76000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B -1 REMARK 465 MET C 1 REMARK 465 ARG C 2 REMARK 465 GLY C 3 REMARK 465 SER C 4 REMARK 465 HIS C 5 REMARK 465 HIS C 6 REMARK 465 HIS C 7 REMARK 465 HIS C 8 REMARK 465 MET D 1 REMARK 465 ARG D 2 REMARK 465 GLY D 3 REMARK 465 SER D 4 REMARK 465 HIS D 5 REMARK 465 HIS D 6 REMARK 465 HIS D 7 REMARK 465 HIS D 8 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 LEU A -1 REMARK 475 LYS D 169 REMARK 475 ASN D 171 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 141 CD CE NZ REMARK 480 LYS A 158 CD CE NZ REMARK 480 LEU B 1 CG CD1 CD2 REMARK 480 ARG B 85 NE CZ NH1 NH2 REMARK 480 LYS B 127 CD CE NZ REMARK 480 LYS B 141 CE NZ REMARK 480 LYS B 158 CD CE NZ REMARK 480 ARG D 143 CG CD NE CZ NH1 NH2 REMARK 480 GLN D 144 CG CD OE1 NE2 REMARK 480 GLU D 158 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 25 O GLU B 122 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD2 TYR C 68 NH1 ARG D 31 4558 1.52 REMARK 500 CG TYR C 68 NH1 ARG D 31 4558 2.15 REMARK 500 CD2 HIS B 111 NZ LYS B 141 1554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 148 CA TYR A 148 C 0.157 REMARK 500 GLU A 171 CD GLU A 171 OE2 -0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA B 56 C - N - CA ANGL. DEV. = -17.5 DEGREES REMARK 500 PRO B 76 C - N - CA ANGL. DEV. = -9.3 DEGREES REMARK 500 LYS B 86 CA - C - N ANGL. DEV. = 12.3 DEGREES REMARK 500 PRO B 117 C - N - CA ANGL. DEV. = 10.8 DEGREES REMARK 500 THR B 253 N - CA - C ANGL. DEV. = -16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 11 67.55 -114.05 REMARK 500 SER A 25 41.82 82.59 REMARK 500 SCH A 29 -73.29 -48.67 REMARK 500 CYS A 63 -73.16 -70.50 REMARK 500 ASP A 69 57.49 -117.84 REMARK 500 ARG A 101 74.63 -118.48 REMARK 500 GLU A 122 -170.81 40.88 REMARK 500 CYS A 132 -157.05 -87.97 REMARK 500 PRO A 134 119.44 -34.38 REMARK 500 LEU A 182 5.08 87.74 REMARK 500 TYR A 188 155.03 -49.54 REMARK 500 GLN A 189 126.39 -171.49 REMARK 500 VAL A 191 -55.45 -145.48 REMARK 500 MET A 196 -2.83 -143.23 REMARK 500 LEU A 204 24.19 -142.96 REMARK 500 ASN A 210 18.76 58.16 REMARK 500 ASN A 222 154.27 81.19 REMARK 500 ILE A 242 -9.43 -58.50 REMARK 500 THR B 16 -6.34 -57.79 REMARK 500 GLU B 19 136.88 -34.13 REMARK 500 SER B 25 55.30 -102.59 REMARK 500 SER B 28 34.89 -98.52 REMARK 500 SCH B 29 -83.94 -34.01 REMARK 500 ILE B 44 -71.18 -56.16 REMARK 500 ALA B 48 -7.14 63.40 REMARK 500 CYS B 67 -151.79 -83.73 REMARK 500 LEU B 93 -147.18 -15.73 REMARK 500 PRO B 102 175.83 -53.40 REMARK 500 VAL B 112 -165.77 -116.29 REMARK 500 PRO B 117 164.60 -35.02 REMARK 500 THR B 120 84.21 -154.08 REMARK 500 GLU B 122 -76.57 -92.27 REMARK 500 LYS B 130 49.32 -67.95 REMARK 500 TYR B 151 159.56 177.07 REMARK 500 SER B 154 48.33 -106.63 REMARK 500 PHE B 174 -173.71 165.63 REMARK 500 ASP B 179 7.30 -65.68 REMARK 500 LEU B 181 -18.35 -39.32 REMARK 500 LYS B 184 -30.51 -156.94 REMARK 500 GLN B 189 87.94 -158.45 REMARK 500 VAL B 191 -32.48 -137.16 REMARK 500 MET B 196 50.05 -104.48 REMARK 500 TRP B 206 -176.46 -170.64 REMARK 500 ASN B 222 163.27 73.93 REMARK 500 TRP B 225 142.82 -39.14 REMARK 500 ARG B 252 -75.47 -59.17 REMARK 500 THR B 253 -82.84 157.43 REMARK 500 GLN C 26 66.02 -108.38 REMARK 500 ASP C 27 -54.02 -25.30 REMARK 500 VAL C 40 88.16 51.20 REMARK 500 REMARK 500 THIS ENTRY HAS 79 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 223 DISTANCE = 7.33 ANGSTROMS DBREF 5MBM A -1 254 UNP P07858 CATB_HUMAN 78 333 DBREF 5MBM B -1 254 UNP P07858 CATB_HUMAN 78 333 DBREF 5MBM C 1 171 PDB 5MBM 5MBM 1 171 DBREF 5MBM D 1 171 PDB 5MBM 5MBM 1 171 SEQRES 1 A 256 LEU LYS LEU PRO ALA SER PHE ASP ALA ARG GLU GLN TRP SEQRES 2 A 256 PRO GLN CYS PRO THR ILE LYS GLU ILE ARG ASP GLN GLY SEQRES 3 A 256 SER CYS GLY SER SCH TRP ALA PHE GLY ALA VAL GLU ALA SEQRES 4 A 256 ILE SER ASP ARG ILE CYS ILE HIS THR ASN ALA HIS VAL SEQRES 5 A 256 SER VAL GLU VAL SER ALA GLU ASP LEU LEU THR CYS CYS SEQRES 6 A 256 GLY SER MET CYS GLY ASP GLY CYS ASN GLY GLY TYR PRO SEQRES 7 A 256 ALA GLU ALA TRP ASN PHE TRP THR ARG LYS GLY LEU VAL SEQRES 8 A 256 SER GLY GLY LEU TYR GLU SER HIS VAL GLY CYS ARG PRO SEQRES 9 A 256 TYR SER ILE PRO PRO CYS GLU HIS HIS VAL ASN GLY SER SEQRES 10 A 256 ARG PRO PRO CYS THR GLY GLU GLY ASP THR PRO LYS CYS SEQRES 11 A 256 SER LYS ILE CYS GLU PRO GLY TYR SER PRO THR TYR LYS SEQRES 12 A 256 GLN ASP LYS HIS TYR GLY TYR ASN SER TYR SER VAL SER SEQRES 13 A 256 ASN SER GLU LYS ASP ILE MET ALA GLU ILE TYR LYS ASN SEQRES 14 A 256 GLY PRO VAL GLU GLY ALA PHE SER VAL TYR SER ASP PHE SEQRES 15 A 256 LEU LEU TYR LYS SER GLY VAL TYR GLN HIS VAL THR GLY SEQRES 16 A 256 GLU MET MET GLY GLY HIS ALA ILE ARG ILE LEU GLY TRP SEQRES 17 A 256 GLY VAL GLU ASN GLY THR PRO TYR TRP LEU VAL ALA ASN SEQRES 18 A 256 SER TRP ASN THR ASP TRP GLY ASP ASN GLY PHE PHE LYS SEQRES 19 A 256 ILE LEU ARG GLY GLN ASP HIS CYS GLY ILE GLU SER GLU SEQRES 20 A 256 VAL VAL ALA GLY ILE PRO ARG THR ASP SEQRES 1 B 256 LEU LYS LEU PRO ALA SER PHE ASP ALA ARG GLU GLN TRP SEQRES 2 B 256 PRO GLN CYS PRO THR ILE LYS GLU ILE ARG ASP GLN GLY SEQRES 3 B 256 SER CYS GLY SER SCH TRP ALA PHE GLY ALA VAL GLU ALA SEQRES 4 B 256 ILE SER ASP ARG ILE CYS ILE HIS THR ASN ALA HIS VAL SEQRES 5 B 256 SER VAL GLU VAL SER ALA GLU ASP LEU LEU THR CYS CYS SEQRES 6 B 256 GLY SER MET CYS GLY ASP GLY CYS ASN GLY GLY TYR PRO SEQRES 7 B 256 ALA GLU ALA TRP ASN PHE TRP THR ARG LYS GLY LEU VAL SEQRES 8 B 256 SER GLY GLY LEU TYR GLU SER HIS VAL GLY CYS ARG PRO SEQRES 9 B 256 TYR SER ILE PRO PRO CYS GLU HIS HIS VAL ASN GLY SER SEQRES 10 B 256 ARG PRO PRO CYS THR GLY GLU GLY ASP THR PRO LYS CYS SEQRES 11 B 256 SER LYS ILE CYS GLU PRO GLY TYR SER PRO THR TYR LYS SEQRES 12 B 256 GLN ASP LYS HIS TYR GLY TYR ASN SER TYR SER VAL SER SEQRES 13 B 256 ASN SER GLU LYS ASP ILE MET ALA GLU ILE TYR LYS ASN SEQRES 14 B 256 GLY PRO VAL GLU GLY ALA PHE SER VAL TYR SER ASP PHE SEQRES 15 B 256 LEU LEU TYR LYS SER GLY VAL TYR GLN HIS VAL THR GLY SEQRES 16 B 256 GLU MET MET GLY GLY HIS ALA ILE ARG ILE LEU GLY TRP SEQRES 17 B 256 GLY VAL GLU ASN GLY THR PRO TYR TRP LEU VAL ALA ASN SEQRES 18 B 256 SER TRP ASN THR ASP TRP GLY ASP ASN GLY PHE PHE LYS SEQRES 19 B 256 ILE LEU ARG GLY GLN ASP HIS CYS GLY ILE GLU SER GLU SEQRES 20 B 256 VAL VAL ALA GLY ILE PRO ARG THR ASP SEQRES 1 C 171 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASP SEQRES 2 C 171 LEU GLY LYS LYS LEU LEU ASP ALA ALA SER ALA GLY GLN SEQRES 3 C 171 ASP ASP GLU VAL ARG ILE LEU ILE ALA ASN GLY ALA ASP SEQRES 4 C 171 VAL ASN ALA SER ASP THR TYR GLY ARG THR PRO LEU HIS SEQRES 5 C 171 ALA ALA ALA TRP GLY HIS LEU GLU ILE VAL ASP VAL LEU SEQRES 6 C 171 LEU ALA TYR GLY ALA ASP VAL ASN ALA SER ASP LYS TRP SEQRES 7 C 171 GLY TYR THR PRO LEU HIS LEU ALA ALA ASN GLU GLY HIS SEQRES 8 C 171 LEU GLU ILE VAL GLU VAL LEU LEU ALA ASN GLY ALA ASP SEQRES 9 C 171 VAL ASN ALA SER SER GLN ARG GLY GLN THR PRO LEU HIS SEQRES 10 C 171 VAL ALA ALA THR TRP GLY HIS LEU GLU ILE VAL ASP VAL SEQRES 11 C 171 LEU LEU ALA ASN GLY ALA ASP VAL ASN ALA ASN ASP ARG SEQRES 12 C 171 GLN GLY LYS THR PRO PHE ASP LEU ALA ILE ASP ASN GLY SEQRES 13 C 171 ASN GLU ASP ILE ALA GLU VAL LEU GLN LYS ALA ALA LYS SEQRES 14 C 171 LEU ASN SEQRES 1 D 171 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASP SEQRES 2 D 171 LEU GLY LYS LYS LEU LEU ASP ALA ALA SER ALA GLY GLN SEQRES 3 D 171 ASP ASP GLU VAL ARG ILE LEU ILE ALA ASN GLY ALA ASP SEQRES 4 D 171 VAL ASN ALA SER ASP THR TYR GLY ARG THR PRO LEU HIS SEQRES 5 D 171 ALA ALA ALA TRP GLY HIS LEU GLU ILE VAL ASP VAL LEU SEQRES 6 D 171 LEU ALA TYR GLY ALA ASP VAL ASN ALA SER ASP LYS TRP SEQRES 7 D 171 GLY TYR THR PRO LEU HIS LEU ALA ALA ASN GLU GLY HIS SEQRES 8 D 171 LEU GLU ILE VAL GLU VAL LEU LEU ALA ASN GLY ALA ASP SEQRES 9 D 171 VAL ASN ALA SER SER GLN ARG GLY GLN THR PRO LEU HIS SEQRES 10 D 171 VAL ALA ALA THR TRP GLY HIS LEU GLU ILE VAL ASP VAL SEQRES 11 D 171 LEU LEU ALA ASN GLY ALA ASP VAL ASN ALA ASN ASP ARG SEQRES 12 D 171 GLN GLY LYS THR PRO PHE ASP LEU ALA ILE ASP ASN GLY SEQRES 13 D 171 ASN GLU ASP ILE ALA GLU VAL LEU GLN LYS ALA ALA LYS SEQRES 14 D 171 LEU ASN MODRES 5MBM SCH A 29 CYS MODIFIED RESIDUE MODRES 5MBM SCH B 29 CYS MODIFIED RESIDUE HET SCH A 29 8 HET SCH B 29 8 HETNAM SCH S-METHYL-THIO-CYSTEINE FORMUL 1 SCH 2(C4 H9 N O2 S2) FORMUL 5 HOH *143(H2 O) HELIX 1 AA1 ASP A 6 TRP A 11 1 6 HELIX 2 AA2 CYS A 14 GLU A 19 1 6 HELIX 3 AA3 SER A 28 THR A 46 1 19 HELIX 4 AA4 SER A 55 CYS A 63 1 9 HELIX 5 AA5 GLY A 64 GLY A 68 5 5 HELIX 6 AA6 ASP A 69 GLY A 73 5 5 HELIX 7 AA7 TYR A 75 GLY A 87 1 13 HELIX 8 AA8 THR A 139 LYS A 144 1 6 HELIX 9 AA9 SER A 156 GLY A 168 1 13 HELIX 10 AB1 ASP A 238 ILE A 242 5 5 HELIX 11 AB2 ALA B 7 TRP B 11 1 5 HELIX 12 AB3 CYS B 14 GLU B 19 1 6 HELIX 13 AB4 SER B 28 THR B 46 1 19 HELIX 14 AB5 SER B 55 GLY B 64 1 10 HELIX 15 AB6 TYR B 75 GLY B 87 1 13 HELIX 16 AB7 TYR B 140 LYS B 144 5 5 HELIX 17 AB8 SER B 156 ASN B 167 1 12 HELIX 18 AB9 ASP B 224 GLY B 229 1 6 HELIX 19 AC1 ASP B 238 ILE B 242 5 5 HELIX 20 AC2 HIS C 10 GLY C 25 1 16 HELIX 21 AC3 GLN C 26 GLY C 37 1 12 HELIX 22 AC4 ASP C 44 ARG C 48 5 5 HELIX 23 AC5 THR C 49 ALA C 55 1 7 HELIX 24 AC6 HIS C 58 TYR C 68 1 11 HELIX 25 AC7 THR C 81 GLY C 90 1 10 HELIX 26 AC8 HIS C 91 ASN C 101 1 11 HELIX 27 AC9 THR C 114 THR C 121 1 8 HELIX 28 AD1 HIS C 124 ASN C 134 1 11 HELIX 29 AD2 THR C 147 ASN C 155 1 9 HELIX 30 AD3 ASN C 157 ASN C 171 1 15 HELIX 31 AD4 HIS D 10 GLY D 25 1 16 HELIX 32 AD5 GLN D 26 ALA D 38 1 13 HELIX 33 AD6 THR D 49 TRP D 56 1 8 HELIX 34 AD7 HIS D 58 TYR D 68 1 11 HELIX 35 AD8 THR D 81 GLY D 90 1 10 HELIX 36 AD9 HIS D 91 ALA D 100 1 10 HELIX 37 AE1 THR D 114 GLY D 123 1 10 HELIX 38 AE2 HIS D 124 ALA D 133 1 10 HELIX 39 AE3 THR D 147 ASN D 155 1 9 HELIX 40 AE4 ASN D 157 ASN D 171 1 15 SHEET 1 AA1 6 GLY A 147 SER A 152 0 SHEET 2 AA1 6 VAL A 246 PRO A 251 -1 O ILE A 250 N TYR A 148 SHEET 3 AA1 6 VAL A 170 TYR A 177 -1 N GLU A 171 O VAL A 247 SHEET 4 AA1 6 MET A 195 GLU A 209 -1 O ILE A 201 N GLY A 172 SHEET 5 AA1 6 THR A 212 ALA A 218 -1 O THR A 212 N GLU A 209 SHEET 6 AA1 6 PHE A 230 LEU A 234 -1 O ILE A 233 N TRP A 215 SHEET 1 AA2 5 PHE B 5 ASP B 6 0 SHEET 2 AA2 5 ILE B 201 GLU B 209 -1 O TRP B 206 N PHE B 5 SHEET 3 AA2 5 THR B 212 ALA B 218 -1 O ALA B 218 N ARG B 202 SHEET 4 AA2 5 PHE B 230 ILE B 233 -1 O ILE B 233 N TRP B 215 SHEET 5 AA2 5 VAL B 187 TYR B 188 1 N TYR B 188 O LYS B 232 SHEET 1 AA3 4 PHE B 5 ASP B 6 0 SHEET 2 AA3 4 ILE B 201 GLU B 209 -1 O TRP B 206 N PHE B 5 SHEET 3 AA3 4 VAL B 170 GLY B 172 -1 N GLY B 172 O ILE B 201 SHEET 4 AA3 4 VAL B 246 VAL B 247 -1 O VAL B 247 N GLU B 171 SHEET 1 AA4 2 SER B 175 TYR B 177 0 SHEET 2 AA4 2 MET B 195 GLY B 198 -1 O MET B 196 N VAL B 176 SSBOND 1 CYS A 14 CYS A 43 1555 1555 2.06 SSBOND 2 CYS A 26 CYS A 71 1555 1555 2.00 SSBOND 3 CYS A 62 CYS A 128 1555 1555 2.07 SSBOND 4 CYS A 63 CYS A 67 1555 1555 2.00 SSBOND 5 CYS A 100 CYS A 132 1555 1555 2.05 SSBOND 6 CYS A 108 CYS A 119 1555 1555 2.02 SSBOND 7 CYS B 14 CYS B 43 1555 1555 2.04 SSBOND 8 CYS B 26 CYS B 71 1555 1555 2.03 SSBOND 9 CYS B 62 CYS B 128 1555 1555 2.07 SSBOND 10 CYS B 63 CYS B 67 1555 1555 2.05 SSBOND 11 CYS B 100 CYS B 132 1555 1555 2.05 SSBOND 12 CYS B 108 CYS B 119 1555 1555 2.01 LINK C SER A 28 N SCH A 29 1555 1555 1.33 LINK C SCH A 29 N TRP A 30 1555 1555 1.34 LINK C SER B 28 N SCH B 29 1555 1555 1.35 LINK C SCH B 29 N TRP B 30 1555 1555 1.36 CRYST1 101.450 201.520 46.860 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009857 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004962 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021340 0.00000