HEADER HYDROLASE 09-NOV-16 5MBY TITLE CRYSTAL STRUCTURE OF ARG184GLN MUTANT OF HUMAN PROLIDASE WITH MN IONS TITLE 2 AND GLYPRO LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: XAA-PRO DIPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: X-PRO DIPEPTIDASE,IMIDODIPEPTIDASE,PEPTIDASE D,PROLINE COMPND 5 DIPEPTIDASE,PROLIDASE; COMPND 6 EC: 3.4.13.9; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PEPD, PRD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PROLIDASE, PEPTIDASE, HYDROLYSIS, PITA-BREAD, METALLOENZYME, KEYWDS 2 MUTATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.WILK,R.PIWOWARCZYK,U.MUELLER,H.DOBBEK,M.S.WEISS REVDAT 5 17-JAN-24 5MBY 1 LINK REVDAT 4 22-APR-20 5MBY 1 REMARK REVDAT 3 26-SEP-18 5MBY 1 JRNL REVDAT 2 15-AUG-18 5MBY 1 JRNL REVDAT 1 20-DEC-17 5MBY 0 JRNL AUTH P.WILK,M.UEHLEIN,R.PIWOWARCZYK,H.DOBBEK,U.MUELLER,M.S.WEISS JRNL TITL STRUCTURAL BASIS FOR PROLIDASE DEFICIENCY DISEASE JRNL TITL 2 MECHANISMS. JRNL REF FEBS J. V. 285 3422 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 30066404 JRNL DOI 10.1111/FEBS.14620 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 173801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.210 REMARK 3 FREE R VALUE TEST SET COUNT : 2100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0558 - 3.8201 1.00 11874 146 0.1337 0.1503 REMARK 3 2 3.8201 - 3.0323 1.00 11593 142 0.1232 0.1274 REMARK 3 3 3.0323 - 2.6490 1.00 11531 141 0.1336 0.1538 REMARK 3 4 2.6490 - 2.4068 1.00 11492 140 0.1349 0.1682 REMARK 3 5 2.4068 - 2.2343 1.00 11474 140 0.1354 0.1805 REMARK 3 6 2.2343 - 2.1026 1.00 11454 140 0.1406 0.1632 REMARK 3 7 2.1026 - 1.9973 1.00 11410 140 0.1514 0.1669 REMARK 3 8 1.9973 - 1.9103 1.00 11377 139 0.1682 0.1653 REMARK 3 9 1.9103 - 1.8368 1.00 11471 140 0.1909 0.2088 REMARK 3 10 1.8368 - 1.7734 1.00 11321 139 0.2203 0.2507 REMARK 3 11 1.7734 - 1.7180 1.00 11431 140 0.2423 0.2360 REMARK 3 12 1.7180 - 1.6689 1.00 11357 138 0.2534 0.2924 REMARK 3 13 1.6689 - 1.6249 1.00 11361 139 0.2653 0.2442 REMARK 3 14 1.6249 - 1.5853 1.00 11339 139 0.2973 0.3120 REMARK 3 15 1.5853 - 1.5492 0.98 11216 137 0.3385 0.3360 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7873 REMARK 3 ANGLE : 1.219 10658 REMARK 3 CHIRALITY : 0.049 1157 REMARK 3 PLANARITY : 0.007 1395 REMARK 3 DIHEDRAL : 13.611 2902 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3840 32.2910 62.0806 REMARK 3 T TENSOR REMARK 3 T11: 0.2287 T22: 0.2129 REMARK 3 T33: 0.2132 T12: 0.0080 REMARK 3 T13: 0.0552 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.4189 L22: 0.3113 REMARK 3 L33: 0.4442 L12: -0.1740 REMARK 3 L13: -0.0895 L23: -0.2569 REMARK 3 S TENSOR REMARK 3 S11: -0.0490 S12: 0.1560 S13: 0.1373 REMARK 3 S21: -0.2554 S22: -0.0064 S23: -0.1463 REMARK 3 S31: -0.0600 S32: 0.0201 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.5943 26.0042 77.4296 REMARK 3 T TENSOR REMARK 3 T11: 0.1682 T22: 0.1794 REMARK 3 T33: 0.2167 T12: 0.0034 REMARK 3 T13: -0.0119 T23: -0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.4657 L22: 0.5479 REMARK 3 L33: 0.2102 L12: 0.0092 REMARK 3 L13: 0.0102 L23: 0.0084 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: -0.0074 S13: -0.0511 REMARK 3 S21: 0.0408 S22: 0.0087 S23: -0.2079 REMARK 3 S31: 0.0039 S32: 0.0398 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.3164 17.6324 68.9864 REMARK 3 T TENSOR REMARK 3 T11: 0.1835 T22: 0.2196 REMARK 3 T33: 0.2708 T12: 0.0055 REMARK 3 T13: 0.0290 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.3945 L22: 0.6103 REMARK 3 L33: 0.5321 L12: -0.1931 REMARK 3 L13: 0.0843 L23: 0.1314 REMARK 3 S TENSOR REMARK 3 S11: 0.0394 S12: 0.0885 S13: -0.2185 REMARK 3 S21: -0.0276 S22: -0.0176 S23: -0.3418 REMARK 3 S31: 0.0414 S32: 0.0165 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.3005 28.3120 78.5872 REMARK 3 T TENSOR REMARK 3 T11: 0.1591 T22: 0.2168 REMARK 3 T33: 0.3168 T12: 0.0121 REMARK 3 T13: -0.0149 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 0.3742 L22: 0.4563 REMARK 3 L33: 0.2365 L12: -0.1162 REMARK 3 L13: 0.1611 L23: -0.3244 REMARK 3 S TENSOR REMARK 3 S11: -0.0638 S12: -0.0712 S13: -0.0095 REMARK 3 S21: 0.0618 S22: 0.0661 S23: -0.2237 REMARK 3 S31: 0.0116 S32: 0.0559 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7996 35.5328 71.6116 REMARK 3 T TENSOR REMARK 3 T11: 0.1782 T22: 0.1852 REMARK 3 T33: 0.1606 T12: 0.0125 REMARK 3 T13: -0.0008 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.8283 L22: 0.9792 REMARK 3 L33: 0.0923 L12: -0.3398 REMARK 3 L13: -0.0290 L23: 0.0331 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: 0.0361 S13: 0.0500 REMARK 3 S21: -0.0620 S22: 0.0149 S23: -0.1753 REMARK 3 S31: -0.0130 S32: 0.0087 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6396 30.4788 72.2085 REMARK 3 T TENSOR REMARK 3 T11: 0.1733 T22: 0.2049 REMARK 3 T33: 0.1857 T12: 0.0128 REMARK 3 T13: -0.0245 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.1266 L22: 0.6958 REMARK 3 L33: 0.1096 L12: 0.0488 REMARK 3 L13: -0.0670 L23: -0.1508 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: 0.0385 S13: 0.0205 REMARK 3 S21: -0.0623 S22: -0.0056 S23: 0.1686 REMARK 3 S31: -0.0315 S32: -0.0264 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1929 42.2686 72.8507 REMARK 3 T TENSOR REMARK 3 T11: 0.1592 T22: 0.1765 REMARK 3 T33: 0.1767 T12: 0.0238 REMARK 3 T13: -0.0294 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.7038 L22: 1.1494 REMARK 3 L33: 0.2447 L12: -0.0543 REMARK 3 L13: -0.0872 L23: 0.0132 REMARK 3 S TENSOR REMARK 3 S11: 0.0208 S12: 0.0608 S13: 0.0471 REMARK 3 S21: -0.0608 S22: -0.0133 S23: 0.2223 REMARK 3 S31: -0.0443 S32: -0.0503 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 320 THROUGH 396 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3394 55.9690 78.3910 REMARK 3 T TENSOR REMARK 3 T11: 0.1724 T22: 0.1622 REMARK 3 T33: 0.2227 T12: 0.0131 REMARK 3 T13: -0.0151 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.1994 L22: 1.2192 REMARK 3 L33: 0.5044 L12: -0.2160 REMARK 3 L13: -0.4510 L23: 0.1773 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: -0.1139 S13: 0.3348 REMARK 3 S21: 0.0522 S22: 0.0449 S23: -0.1984 REMARK 3 S31: -0.0813 S32: 0.0538 S33: 0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 397 THROUGH 436 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0732 54.3090 81.8048 REMARK 3 T TENSOR REMARK 3 T11: 0.2039 T22: 0.1990 REMARK 3 T33: 0.2020 T12: 0.0233 REMARK 3 T13: -0.0039 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.1878 L22: 0.8804 REMARK 3 L33: 0.1205 L12: -0.2483 REMARK 3 L13: -0.1137 L23: 0.0822 REMARK 3 S TENSOR REMARK 3 S11: -0.0351 S12: -0.0535 S13: 0.1226 REMARK 3 S21: 0.0990 S22: 0.0342 S23: -0.0286 REMARK 3 S31: -0.0746 S32: 0.0258 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 437 THROUGH 464 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4821 50.7905 73.4748 REMARK 3 T TENSOR REMARK 3 T11: 0.1628 T22: 0.1718 REMARK 3 T33: 0.2259 T12: 0.0214 REMARK 3 T13: 0.0114 T23: 0.0355 REMARK 3 L TENSOR REMARK 3 L11: 0.2193 L22: 0.8743 REMARK 3 L33: 0.2748 L12: 0.3297 REMARK 3 L13: 0.1372 L23: -0.0749 REMARK 3 S TENSOR REMARK 3 S11: 0.0781 S12: 0.1276 S13: 0.2322 REMARK 3 S21: -0.0883 S22: -0.0136 S23: 0.2023 REMARK 3 S31: -0.0426 S32: -0.1224 S33: 0.0222 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 465 THROUGH 490 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9966 44.2006 60.1180 REMARK 3 T TENSOR REMARK 3 T11: 0.2784 T22: 0.2891 REMARK 3 T33: 0.2201 T12: 0.0502 REMARK 3 T13: -0.0923 T23: 0.0371 REMARK 3 L TENSOR REMARK 3 L11: 0.2089 L22: 0.2300 REMARK 3 L33: 0.0971 L12: -0.1341 REMARK 3 L13: -0.0710 L23: 0.0802 REMARK 3 S TENSOR REMARK 3 S11: 0.1275 S12: 0.4154 S13: 0.0777 REMARK 3 S21: -0.4120 S22: -0.1133 S23: 0.2837 REMARK 3 S31: -0.0002 S32: -0.0611 S33: 0.1674 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1832 15.0148 96.9572 REMARK 3 T TENSOR REMARK 3 T11: 0.2720 T22: 0.2199 REMARK 3 T33: 0.2288 T12: 0.0145 REMARK 3 T13: 0.0958 T23: 0.0438 REMARK 3 L TENSOR REMARK 3 L11: 0.4492 L22: 0.3701 REMARK 3 L33: 0.4368 L12: 0.3317 REMARK 3 L13: -0.0384 L23: 0.1847 REMARK 3 S TENSOR REMARK 3 S11: 0.0232 S12: -0.0994 S13: -0.1469 REMARK 3 S21: 0.2855 S22: 0.0814 S23: 0.3661 REMARK 3 S31: -0.0525 S32: -0.2190 S33: -0.3560 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6777 22.4279 95.8215 REMARK 3 T TENSOR REMARK 3 T11: 0.2492 T22: 0.1974 REMARK 3 T33: 0.1379 T12: 0.0044 REMARK 3 T13: -0.0057 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.1651 L22: 0.6187 REMARK 3 L33: 0.2689 L12: -0.1425 REMARK 3 L13: -0.0391 L23: -0.1791 REMARK 3 S TENSOR REMARK 3 S11: -0.0375 S12: 0.0195 S13: 0.0438 REMARK 3 S21: 0.1966 S22: 0.0248 S23: -0.0174 REMARK 3 S31: -0.0639 S32: 0.0455 S33: 0.0000 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5364 30.6261 100.7407 REMARK 3 T TENSOR REMARK 3 T11: 0.3593 T22: 0.2464 REMARK 3 T33: 0.1992 T12: 0.0318 REMARK 3 T13: 0.0502 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.7693 L22: 0.3878 REMARK 3 L33: 0.5689 L12: -0.1622 REMARK 3 L13: 0.1950 L23: 0.0845 REMARK 3 S TENSOR REMARK 3 S11: -0.0584 S12: -0.0388 S13: 0.1274 REMARK 3 S21: 0.3557 S22: 0.0550 S23: 0.1171 REMARK 3 S31: -0.1931 S32: -0.1448 S33: -0.0403 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 125 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4936 21.4958 106.0246 REMARK 3 T TENSOR REMARK 3 T11: 0.4255 T22: 0.2489 REMARK 3 T33: 0.1423 T12: 0.0189 REMARK 3 T13: -0.0251 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.3016 L22: 0.3070 REMARK 3 L33: 0.5761 L12: 0.2295 REMARK 3 L13: 0.1905 L23: -0.1005 REMARK 3 S TENSOR REMARK 3 S11: -0.0251 S12: -0.1239 S13: 0.0141 REMARK 3 S21: 0.3777 S22: 0.0854 S23: -0.1102 REMARK 3 S31: -0.1140 S32: 0.0804 S33: 0.0015 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 160 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3977 12.1009 92.9660 REMARK 3 T TENSOR REMARK 3 T11: 0.2239 T22: 0.1641 REMARK 3 T33: 0.1648 T12: 0.0166 REMARK 3 T13: 0.0133 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.2226 L22: 0.8251 REMARK 3 L33: 0.7334 L12: -0.2160 REMARK 3 L13: -0.2713 L23: -0.2468 REMARK 3 S TENSOR REMARK 3 S11: -0.0360 S12: -0.0670 S13: -0.0709 REMARK 3 S21: 0.2423 S22: 0.0230 S23: 0.0995 REMARK 3 S31: 0.0302 S32: -0.1254 S33: -0.0004 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 213 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0852 8.0655 69.0401 REMARK 3 T TENSOR REMARK 3 T11: 0.1662 T22: 0.1922 REMARK 3 T33: 0.1710 T12: 0.0026 REMARK 3 T13: -0.0271 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.3613 L22: 0.9976 REMARK 3 L33: 0.2098 L12: -0.2129 REMARK 3 L13: -0.0950 L23: 0.1784 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: 0.0752 S13: -0.0984 REMARK 3 S21: -0.0811 S22: -0.0185 S23: 0.1011 REMARK 3 S31: 0.0034 S32: -0.0495 S33: -0.0000 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 320 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6932 -8.0166 82.5128 REMARK 3 T TENSOR REMARK 3 T11: 0.2107 T22: 0.1767 REMARK 3 T33: 0.2325 T12: 0.0048 REMARK 3 T13: -0.0176 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.5466 L22: 0.7940 REMARK 3 L33: 0.9745 L12: -0.1792 REMARK 3 L13: -0.4086 L23: 0.2487 REMARK 3 S TENSOR REMARK 3 S11: -0.0374 S12: -0.0639 S13: -0.2218 REMARK 3 S21: 0.2250 S22: 0.0484 S23: 0.0085 REMARK 3 S31: 0.1667 S32: 0.0681 S33: -0.0000 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 408 THROUGH 443 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1558 -8.7920 68.0877 REMARK 3 T TENSOR REMARK 3 T11: 0.1584 T22: 0.2127 REMARK 3 T33: 0.2663 T12: 0.0112 REMARK 3 T13: -0.0217 T23: -0.0456 REMARK 3 L TENSOR REMARK 3 L11: 0.3421 L22: 0.6288 REMARK 3 L33: 0.3824 L12: 0.0399 REMARK 3 L13: 0.1099 L23: -0.3047 REMARK 3 S TENSOR REMARK 3 S11: 0.0757 S12: 0.0473 S13: -0.1598 REMARK 3 S21: -0.0235 S22: -0.0242 S23: -0.1452 REMARK 3 S31: 0.0550 S32: 0.1305 S33: 0.0015 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 444 THROUGH 489 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4758 2.1999 70.7763 REMARK 3 T TENSOR REMARK 3 T11: 0.1562 T22: 0.2158 REMARK 3 T33: 0.2378 T12: -0.0099 REMARK 3 T13: -0.0271 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 0.5117 L22: 0.7533 REMARK 3 L33: 0.4918 L12: -0.2785 REMARK 3 L13: 0.0646 L23: -0.0160 REMARK 3 S TENSOR REMARK 3 S11: 0.0146 S12: 0.1335 S13: -0.1408 REMARK 3 S21: -0.0260 S22: -0.0735 S23: 0.2191 REMARK 3 S31: -0.0004 S32: -0.1049 S33: -0.0333 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MBY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002236. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR SI REMARK 200 -11 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 173821 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.549 REMARK 200 RESOLUTION RANGE LOW (A) : 48.033 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.740 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.58 REMARK 200 R MERGE FOR SHELL (I) : 1.37500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.290 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 5M4J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM NACACODYLATE, 690-760MM REMARK 280 NACITRATE, PH 6.9, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.68650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 108.68650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.78400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.54550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.78400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.54550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.68650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.78400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.54550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.68650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.78400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.54550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 687 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 484 REMARK 465 LYS B 484 REMARK 465 SER B 490 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OXT GLY B 503 O HOH B 601 2.04 REMARK 500 O HOH A 655 O HOH B 1066 2.07 REMARK 500 O HOH A 1142 O HOH A 1177 2.07 REMARK 500 O HOH A 1059 O HOH B 736 2.10 REMARK 500 O HOH A 679 O HOH A 1083 2.12 REMARK 500 O HOH B 1160 O HOH B 1192 2.14 REMARK 500 O HOH B 730 O HOH B 1039 2.14 REMARK 500 O HOH B 618 O HOH B 1063 2.15 REMARK 500 O HOH A 1102 O HOH B 1066 2.16 REMARK 500 O HOH A 1051 O HOH B 1053 2.16 REMARK 500 O HOH A 678 O HOH A 1117 2.16 REMARK 500 O HOH A 873 O HOH A 1146 2.17 REMARK 500 O HOH B 1044 O HOH B 1063 2.18 REMARK 500 O HOH A 1087 O HOH A 1116 2.18 REMARK 500 O HOH B 884 O HOH B 1084 2.19 REMARK 500 O LEU B 435 O HOH B 602 2.19 REMARK 500 OD2 ASP B 423 O HOH B 603 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 33 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 -123.42 49.38 REMARK 500 TYR A 57 -131.13 48.04 REMARK 500 CYS A 245 77.77 -117.06 REMARK 500 PRO A 365 41.13 -86.48 REMARK 500 GLU A 412 57.60 -140.82 REMARK 500 CYS A 482 -78.20 -67.85 REMARK 500 ASN B 13 -127.24 53.45 REMARK 500 TYR B 57 -129.08 48.92 REMARK 500 CYS B 245 74.71 -119.46 REMARK 500 TYR B 256 150.81 -46.26 REMARK 500 ALA B 261 69.32 -150.05 REMARK 500 PRO B 262 56.14 -90.03 REMARK 500 PRO B 365 39.90 -87.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 276 OD1 REMARK 620 2 ASP A 276 OD2 58.6 REMARK 620 3 ASP A 287 OD1 92.2 150.7 REMARK 620 4 GLU A 452 OE1 96.8 96.5 87.8 REMARK 620 5 OH A 501 O 152.1 95.2 113.3 95.5 REMARK 620 6 GLY A 503 N 87.2 93.7 82.5 169.7 85.1 REMARK 620 7 GLY A 503 N 86.5 84.7 92.6 176.7 81.4 10.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 499 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 287 OD2 REMARK 620 2 HIS A 370 NE2 88.7 REMARK 620 3 GLU A 412 OE2 157.6 86.5 REMARK 620 4 GLU A 452 OE2 85.7 133.6 81.9 REMARK 620 5 OH A 501 O 103.8 131.7 95.7 94.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 276 OD1 REMARK 620 2 ASP B 276 OD2 57.3 REMARK 620 3 ASP B 287 OD1 90.6 147.9 REMARK 620 4 GLU B 452 OE1 97.2 96.6 86.9 REMARK 620 5 OH B 501 O 152.3 96.1 115.7 92.9 REMARK 620 6 GLY B 503 N 87.5 89.8 88.4 173.4 85.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 499 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 287 OD2 REMARK 620 2 HIS B 370 NE2 87.5 REMARK 620 3 GLU B 412 OE2 155.8 87.2 REMARK 620 4 GLU B 452 OE2 83.7 131.0 82.1 REMARK 620 5 OH B 501 O 105.8 136.6 94.1 91.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PRO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OH B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PRO B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5M4J RELATED DB: PDB REMARK 900 WILD-TYPE HUMAN PROLIDASE REMARK 900 RELATED ID: 5MBZ RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC0 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC1 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC2 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC3 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC4 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC5 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE DBREF 5MBY A 6 490 UNP P12955 PEPD_HUMAN 6 490 DBREF 5MBY B 6 490 UNP P12955 PEPD_HUMAN 6 490 SEQADV 5MBY GLN A 184 UNP P12955 ARG 184 ENGINEERED MUTATION SEQADV 5MBY GLN B 184 UNP P12955 ARG 184 ENGINEERED MUTATION SEQRES 1 A 485 GLY PRO SER PHE TRP LEU GLY ASN GLU THR LEU LYS VAL SEQRES 2 A 485 PRO LEU ALA LEU PHE ALA LEU ASN ARG GLN ARG LEU CYS SEQRES 3 A 485 GLU ARG LEU ARG LYS ASN PRO ALA VAL GLN ALA GLY SER SEQRES 4 A 485 ILE VAL VAL LEU GLN GLY GLY GLU GLU THR GLN ARG TYR SEQRES 5 A 485 CYS THR ASP THR GLY VAL LEU PHE ARG GLN GLU SER PHE SEQRES 6 A 485 PHE HIS TRP ALA PHE GLY VAL THR GLU PRO GLY CYS TYR SEQRES 7 A 485 GLY VAL ILE ASP VAL ASP THR GLY LYS SER THR LEU PHE SEQRES 8 A 485 VAL PRO ARG LEU PRO ALA SER HIS ALA THR TRP MET GLY SEQRES 9 A 485 LYS ILE HIS SER LYS GLU HIS PHE LYS GLU LYS TYR ALA SEQRES 10 A 485 VAL ASP ASP VAL GLN TYR VAL ASP GLU ILE ALA SER VAL SEQRES 11 A 485 LEU THR SER GLN LYS PRO SER VAL LEU LEU THR LEU ARG SEQRES 12 A 485 GLY VAL ASN THR ASP SER GLY SER VAL CYS ARG GLU ALA SEQRES 13 A 485 SER PHE ASP GLY ILE SER LYS PHE GLU VAL ASN ASN THR SEQRES 14 A 485 ILE LEU HIS PRO GLU ILE VAL GLU CYS GLN VAL PHE LYS SEQRES 15 A 485 THR ASP MET GLU LEU GLU VAL LEU ARG TYR THR ASN LYS SEQRES 16 A 485 ILE SER SER GLU ALA HIS ARG GLU VAL MET LYS ALA VAL SEQRES 17 A 485 LYS VAL GLY MET LYS GLU TYR GLU LEU GLU SER LEU PHE SEQRES 18 A 485 GLU HIS TYR CYS TYR SER ARG GLY GLY MET ARG HIS SER SEQRES 19 A 485 SER TYR THR CYS ILE CYS GLY SER GLY GLU ASN SER ALA SEQRES 20 A 485 VAL LEU HIS TYR GLY HIS ALA GLY ALA PRO ASN ASP ARG SEQRES 21 A 485 THR ILE GLN ASN GLY ASP MET CYS LEU PHE ASP MET GLY SEQRES 22 A 485 GLY GLU TYR TYR CYS PHE ALA SER ASP ILE THR CYS SER SEQRES 23 A 485 PHE PRO ALA ASN GLY LYS PHE THR ALA ASP GLN LYS ALA SEQRES 24 A 485 VAL TYR GLU ALA VAL LEU ARG SER SER ARG ALA VAL MET SEQRES 25 A 485 GLY ALA MET LYS PRO GLY VAL TRP TRP PRO ASP MET HIS SEQRES 26 A 485 ARG LEU ALA ASP ARG ILE HIS LEU GLU GLU LEU ALA HIS SEQRES 27 A 485 MET GLY ILE LEU SER GLY SER VAL ASP ALA MET VAL GLN SEQRES 28 A 485 ALA HIS LEU GLY ALA VAL PHE MET PRO HIS GLY LEU GLY SEQRES 29 A 485 HIS PHE LEU GLY ILE ASP VAL HIS ASP VAL GLY GLY TYR SEQRES 30 A 485 PRO GLU GLY VAL GLU ARG ILE ASP GLU PRO GLY LEU ARG SEQRES 31 A 485 SER LEU ARG THR ALA ARG HIS LEU GLN PRO GLY MET VAL SEQRES 32 A 485 LEU THR VAL GLU PRO GLY ILE TYR PHE ILE ASP HIS LEU SEQRES 33 A 485 LEU ASP GLU ALA LEU ALA ASP PRO ALA ARG ALA SER PHE SEQRES 34 A 485 LEU ASN ARG GLU VAL LEU GLN ARG PHE ARG GLY PHE GLY SEQRES 35 A 485 GLY VAL ARG ILE GLU GLU ASP VAL VAL VAL THR ASP SER SEQRES 36 A 485 GLY ILE GLU LEU LEU THR CYS VAL PRO ARG THR VAL GLU SEQRES 37 A 485 GLU ILE GLU ALA CYS MET ALA GLY CYS ASP LYS ALA PHE SEQRES 38 A 485 THR PRO PHE SER SEQRES 1 B 485 GLY PRO SER PHE TRP LEU GLY ASN GLU THR LEU LYS VAL SEQRES 2 B 485 PRO LEU ALA LEU PHE ALA LEU ASN ARG GLN ARG LEU CYS SEQRES 3 B 485 GLU ARG LEU ARG LYS ASN PRO ALA VAL GLN ALA GLY SER SEQRES 4 B 485 ILE VAL VAL LEU GLN GLY GLY GLU GLU THR GLN ARG TYR SEQRES 5 B 485 CYS THR ASP THR GLY VAL LEU PHE ARG GLN GLU SER PHE SEQRES 6 B 485 PHE HIS TRP ALA PHE GLY VAL THR GLU PRO GLY CYS TYR SEQRES 7 B 485 GLY VAL ILE ASP VAL ASP THR GLY LYS SER THR LEU PHE SEQRES 8 B 485 VAL PRO ARG LEU PRO ALA SER HIS ALA THR TRP MET GLY SEQRES 9 B 485 LYS ILE HIS SER LYS GLU HIS PHE LYS GLU LYS TYR ALA SEQRES 10 B 485 VAL ASP ASP VAL GLN TYR VAL ASP GLU ILE ALA SER VAL SEQRES 11 B 485 LEU THR SER GLN LYS PRO SER VAL LEU LEU THR LEU ARG SEQRES 12 B 485 GLY VAL ASN THR ASP SER GLY SER VAL CYS ARG GLU ALA SEQRES 13 B 485 SER PHE ASP GLY ILE SER LYS PHE GLU VAL ASN ASN THR SEQRES 14 B 485 ILE LEU HIS PRO GLU ILE VAL GLU CYS GLN VAL PHE LYS SEQRES 15 B 485 THR ASP MET GLU LEU GLU VAL LEU ARG TYR THR ASN LYS SEQRES 16 B 485 ILE SER SER GLU ALA HIS ARG GLU VAL MET LYS ALA VAL SEQRES 17 B 485 LYS VAL GLY MET LYS GLU TYR GLU LEU GLU SER LEU PHE SEQRES 18 B 485 GLU HIS TYR CYS TYR SER ARG GLY GLY MET ARG HIS SER SEQRES 19 B 485 SER TYR THR CYS ILE CYS GLY SER GLY GLU ASN SER ALA SEQRES 20 B 485 VAL LEU HIS TYR GLY HIS ALA GLY ALA PRO ASN ASP ARG SEQRES 21 B 485 THR ILE GLN ASN GLY ASP MET CYS LEU PHE ASP MET GLY SEQRES 22 B 485 GLY GLU TYR TYR CYS PHE ALA SER ASP ILE THR CYS SER SEQRES 23 B 485 PHE PRO ALA ASN GLY LYS PHE THR ALA ASP GLN LYS ALA SEQRES 24 B 485 VAL TYR GLU ALA VAL LEU ARG SER SER ARG ALA VAL MET SEQRES 25 B 485 GLY ALA MET LYS PRO GLY VAL TRP TRP PRO ASP MET HIS SEQRES 26 B 485 ARG LEU ALA ASP ARG ILE HIS LEU GLU GLU LEU ALA HIS SEQRES 27 B 485 MET GLY ILE LEU SER GLY SER VAL ASP ALA MET VAL GLN SEQRES 28 B 485 ALA HIS LEU GLY ALA VAL PHE MET PRO HIS GLY LEU GLY SEQRES 29 B 485 HIS PHE LEU GLY ILE ASP VAL HIS ASP VAL GLY GLY TYR SEQRES 30 B 485 PRO GLU GLY VAL GLU ARG ILE ASP GLU PRO GLY LEU ARG SEQRES 31 B 485 SER LEU ARG THR ALA ARG HIS LEU GLN PRO GLY MET VAL SEQRES 32 B 485 LEU THR VAL GLU PRO GLY ILE TYR PHE ILE ASP HIS LEU SEQRES 33 B 485 LEU ASP GLU ALA LEU ALA ASP PRO ALA ARG ALA SER PHE SEQRES 34 B 485 LEU ASN ARG GLU VAL LEU GLN ARG PHE ARG GLY PHE GLY SEQRES 35 B 485 GLY VAL ARG ILE GLU GLU ASP VAL VAL VAL THR ASP SER SEQRES 36 B 485 GLY ILE GLU LEU LEU THR CYS VAL PRO ARG THR VAL GLU SEQRES 37 B 485 GLU ILE GLU ALA CYS MET ALA GLY CYS ASP LYS ALA PHE SEQRES 38 B 485 THR PRO PHE SER HET MN A 499 1 HET MN A 500 1 HET OH A 501 1 HET GLY A 503 10 HET PRO A 504 8 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HET MN B 499 1 HET MN B 500 1 HET OH B 501 1 HET GLY B 503 5 HET PRO B 504 8 HET GOL B 505 6 HET GOL B 506 6 HETNAM MN MANGANESE (II) ION HETNAM OH HYDROXIDE ION HETNAM GLY GLYCINE HETNAM PRO PROLINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN 4(MN 2+) FORMUL 5 OH 2(H O 1-) FORMUL 6 GLY 2(C2 H5 N O2) FORMUL 7 PRO 2(C5 H9 N O2) FORMUL 8 GOL 6(C3 H8 O3) FORMUL 19 HOH *1219(H2 O) HELIX 1 AA1 LEU A 20 LYS A 36 1 17 HELIX 2 AA2 GLU A 68 GLY A 76 1 9 HELIX 3 AA3 SER A 103 MET A 108 1 6 HELIX 4 AA4 SER A 113 ALA A 122 1 10 HELIX 5 AA5 GLU A 131 LYS A 140 1 10 HELIX 6 AA6 GLY A 165 PHE A 169 5 5 HELIX 7 AA7 ILE A 175 PHE A 186 1 12 HELIX 8 AA8 THR A 188 VAL A 213 1 26 HELIX 9 AA9 LYS A 218 GLY A 235 1 18 HELIX 10 AB1 GLU A 249 VAL A 253 5 5 HELIX 11 AB2 THR A 299 MET A 320 1 22 HELIX 12 AB3 TRP A 325 MET A 344 1 20 HELIX 13 AB4 SER A 350 ALA A 357 1 8 HELIX 14 AB5 LEU A 359 MET A 364 1 6 HELIX 15 AB6 GLY A 393 LEU A 397 5 5 HELIX 16 AB7 ILE A 418 ALA A 427 1 10 HELIX 17 AB8 ARG A 431 LEU A 435 5 5 HELIX 18 AB9 ASN A 436 GLN A 441 1 6 HELIX 19 AC1 ARG A 442 ARG A 444 5 3 HELIX 20 AC2 THR A 471 ALA A 480 1 10 HELIX 21 AC3 LEU B 20 ASN B 37 1 18 HELIX 22 AC4 GLU B 68 GLY B 76 1 9 HELIX 23 AC5 SER B 103 MET B 108 1 6 HELIX 24 AC6 SER B 113 ALA B 122 1 10 HELIX 25 AC7 GLU B 131 LYS B 140 1 10 HELIX 26 AC8 GLY B 165 PHE B 169 5 5 HELIX 27 AC9 ILE B 175 PHE B 186 1 12 HELIX 28 AD1 THR B 188 VAL B 213 1 26 HELIX 29 AD2 LYS B 218 GLY B 235 1 18 HELIX 30 AD3 GLU B 249 VAL B 253 5 5 HELIX 31 AD4 THR B 299 MET B 320 1 22 HELIX 32 AD5 TRP B 325 MET B 344 1 20 HELIX 33 AD6 SER B 350 ALA B 357 1 8 HELIX 34 AD7 LEU B 359 MET B 364 1 6 HELIX 35 AD8 GLY B 393 LEU B 397 5 5 HELIX 36 AD9 ILE B 418 ASP B 428 1 11 HELIX 37 AE1 ASP B 428 SER B 433 1 6 HELIX 38 AE2 ASN B 436 GLN B 441 1 6 HELIX 39 AE3 ARG B 442 ARG B 444 5 3 HELIX 40 AE4 THR B 471 GLY B 481 1 11 SHEET 1 AA1 2 SER A 8 PHE A 9 0 SHEET 2 AA1 2 VAL A 18 PRO A 19 -1 O VAL A 18 N PHE A 9 SHEET 1 AA2 6 ASP A 125 TYR A 128 0 SHEET 2 AA2 6 SER A 93 VAL A 97 1 N VAL A 97 O GLN A 127 SHEET 3 AA2 6 TYR A 83 ASP A 87 -1 N TYR A 83 O PHE A 96 SHEET 4 AA2 6 ILE A 45 GLN A 49 -1 N LEU A 48 O GLY A 84 SHEET 5 AA2 6 LEU A 144 LEU A 145 1 O LEU A 145 N ILE A 45 SHEET 6 AA2 6 VAL A 171 ASN A 172 1 O ASN A 172 N LEU A 144 SHEET 1 AA3 2 GLY A 149 VAL A 150 0 SHEET 2 AA3 2 VAL A 157 CYS A 158 -1 O CYS A 158 N GLY A 149 SHEET 1 AA4 2 HIS A 238 SER A 239 0 SHEET 2 AA4 2 GLY A 279 GLU A 280 -1 O GLU A 280 N HIS A 238 SHEET 1 AA5 3 ILE A 244 SER A 247 0 SHEET 2 AA5 3 MET A 272 MET A 277 -1 O LEU A 274 N GLY A 246 SHEET 3 AA5 3 ILE A 288 PRO A 293 -1 O PHE A 292 N CYS A 273 SHEET 1 AA6 3 VAL A 408 VAL A 411 0 SHEET 2 AA6 3 GLU A 453 VAL A 457 -1 O VAL A 455 N LEU A 409 SHEET 3 AA6 3 ILE A 462 LEU A 464 -1 O GLU A 463 N VAL A 456 SHEET 1 AA7 2 GLY A 414 TYR A 416 0 SHEET 2 AA7 2 GLY A 448 ARG A 450 -1 O VAL A 449 N ILE A 415 SHEET 1 AA8 2 SER B 8 PHE B 9 0 SHEET 2 AA8 2 VAL B 18 PRO B 19 -1 O VAL B 18 N PHE B 9 SHEET 1 AA9 6 ASP B 125 TYR B 128 0 SHEET 2 AA9 6 SER B 93 VAL B 97 1 N VAL B 97 O GLN B 127 SHEET 3 AA9 6 TYR B 83 ASP B 87 -1 N TYR B 83 O PHE B 96 SHEET 4 AA9 6 ILE B 45 GLN B 49 -1 N VAL B 46 O ILE B 86 SHEET 5 AA9 6 LEU B 144 LEU B 145 1 O LEU B 145 N ILE B 45 SHEET 6 AA9 6 VAL B 171 ASN B 172 1 O ASN B 172 N LEU B 144 SHEET 1 AB1 2 THR B 54 GLN B 55 0 SHEET 2 AB1 2 GLY B 62 VAL B 63 -1 O VAL B 63 N THR B 54 SHEET 1 AB2 2 GLY B 149 VAL B 150 0 SHEET 2 AB2 2 VAL B 157 CYS B 158 -1 O CYS B 158 N GLY B 149 SHEET 1 AB3 2 HIS B 238 SER B 239 0 SHEET 2 AB3 2 GLY B 279 GLU B 280 -1 O GLU B 280 N HIS B 238 SHEET 1 AB4 3 ILE B 244 SER B 247 0 SHEET 2 AB4 3 MET B 272 MET B 277 -1 O LEU B 274 N GLY B 246 SHEET 3 AB4 3 ILE B 288 PRO B 293 -1 O PHE B 292 N CYS B 273 SHEET 1 AB5 3 VAL B 408 VAL B 411 0 SHEET 2 AB5 3 GLU B 453 VAL B 457 -1 O VAL B 455 N LEU B 409 SHEET 3 AB5 3 ILE B 462 LEU B 464 -1 O GLU B 463 N VAL B 456 SHEET 1 AB6 2 GLY B 414 TYR B 416 0 SHEET 2 AB6 2 GLY B 448 ARG B 450 -1 O VAL B 449 N ILE B 415 SSBOND 1 CYS A 58 CYS B 158 1555 1555 2.09 SSBOND 2 CYS A 158 CYS B 58 1555 1555 2.09 SSBOND 3 CYS A 482 CYS A 482 1555 3555 2.04 SSBOND 4 CYS B 482 CYS B 482 1555 3555 2.04 LINK OD1 ASP A 276 MN MN A 500 1555 1555 2.26 LINK OD2 ASP A 276 MN MN A 500 1555 1555 2.29 LINK OD2 ASP A 287 MN MN A 499 1555 1555 2.13 LINK OD1 ASP A 287 MN MN A 500 1555 1555 2.12 LINK NE2 HIS A 370 MN MN A 499 1555 1555 2.18 LINK OE2 GLU A 412 MN MN A 499 1555 1555 2.15 LINK OE2 GLU A 452 MN MN A 499 1555 1555 2.14 LINK OE1 GLU A 452 MN MN A 500 1555 1555 2.13 LINK MN MN A 499 O OH A 501 1555 1555 2.22 LINK MN MN A 500 O OH A 501 1555 1555 2.11 LINK MN MN A 500 N AGLY A 503 1555 1555 2.27 LINK MN MN A 500 N BGLY A 503 1555 1555 2.40 LINK OD1 ASP B 276 MN MN B 500 1555 1555 2.29 LINK OD2 ASP B 276 MN MN B 500 1555 1555 2.29 LINK OD2 ASP B 287 MN MN B 499 1555 1555 2.17 LINK OD1 ASP B 287 MN MN B 500 1555 1555 2.13 LINK NE2 HIS B 370 MN MN B 499 1555 1555 2.19 LINK OE2 GLU B 412 MN MN B 499 1555 1555 2.15 LINK OE2 GLU B 452 MN MN B 499 1555 1555 2.17 LINK OE1 GLU B 452 MN MN B 500 1555 1555 2.18 LINK MN MN B 499 O OH B 501 1555 1555 2.23 LINK MN MN B 500 O OH B 501 1555 1555 2.05 LINK MN MN B 500 N GLY B 503 1555 1555 2.34 SITE 1 AC1 6 ASP A 287 HIS A 370 GLU A 412 GLU A 452 SITE 2 AC1 6 MN A 500 OH A 501 SITE 1 AC2 6 ASP A 276 ASP A 287 GLU A 452 MN A 499 SITE 2 AC2 6 OH A 501 GLY A 503 SITE 1 AC3 8 ASP A 276 ASP A 287 GLU A 412 GLU A 452 SITE 2 AC3 8 MN A 499 MN A 500 GLY A 503 PRO A 504 SITE 1 AC4 11 TYR A 241 ILE A 244 HIS A 255 ASP A 276 SITE 2 AC4 11 ASP A 287 VAL A 376 HIS A 377 MN A 500 SITE 3 AC4 11 OH A 501 PRO A 504 HOH A 601 SITE 1 AC5 10 HIS A 255 HIS A 366 HIS A 377 ARG A 398 SITE 2 AC5 10 GLU A 412 ARG A 450 OH A 501 GLY A 503 SITE 3 AC5 10 HOH A 727 HOH A 819 SITE 1 AC6 4 TYR A 83 VAL A 129 ASP A 130 ASP A 164 SITE 1 AC7 6 GLN A 49 ARG A 159 GLU A 160 ALA A 161 SITE 2 AC7 6 HOH A 773 HOH A 781 SITE 1 AC8 8 PHE A 9 TRP A 10 LEU A 11 LYS A 120 SITE 2 AC8 8 HOH A 604 HOH A 610 HOH A 983 ASP B 264 SITE 1 AC9 4 THR A 152 GLU A 387 ARG A 388 HOH A 750 SITE 1 AD1 6 ASP B 287 HIS B 370 GLU B 412 GLU B 452 SITE 2 AD1 6 MN B 500 OH B 501 SITE 1 AD2 6 ASP B 276 ASP B 287 GLU B 452 MN B 499 SITE 2 AD2 6 OH B 501 GLY B 503 SITE 1 AD3 8 ASP B 276 ASP B 287 GLU B 412 GLU B 452 SITE 2 AD3 8 MN B 499 MN B 500 GLY B 503 PRO B 504 SITE 1 AD4 10 TYR B 241 ILE B 244 HIS B 255 ASP B 276 SITE 2 AD4 10 ASP B 287 HIS B 377 MN B 500 OH B 501 SITE 3 AD4 10 PRO B 504 HOH B 601 SITE 1 AD5 11 TRP A 107 HIS B 255 HIS B 366 HIS B 377 SITE 2 AD5 11 ARG B 398 GLU B 412 ARG B 450 OH B 501 SITE 3 AD5 11 GLY B 503 HOH B 741 HOH B 770 SITE 1 AD6 8 GLN B 49 ARG B 159 GLU B 160 ALA B 161 SITE 2 AD6 8 HOH B 605 HOH B 766 HOH B 860 HOH B 873 SITE 1 AD7 3 GLU B 387 ARG B 388 HOH B 713 CRYST1 103.568 107.091 217.373 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009655 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004600 0.00000