HEADER HYDROLASE 09-NOV-16 5MC0 TITLE CRYSTAL STRUCTURE OF DELTYR231 MUTANT OF HUMAN PROLIDASE WITH MN IONS TITLE 2 AND GLYPRO LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: XAA-PRO DIPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: X-PRO DIPEPTIDASE,IMIDODIPEPTIDASE,PEPTIDASE D,PROLINE COMPND 5 DIPEPTIDASE,PROLIDASE; COMPND 6 EC: 3.4.13.9; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PEPD, PRD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PROLIDASE, PEPTIDASE, HYDROLYSIS, PITA-BREAD, METALLOENZYME, KEYWDS 2 MUTATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.WILK,U.MUELLER,H.DOBBEK,M.S.WEISS REVDAT 5 17-JAN-24 5MC0 1 LINK REVDAT 4 22-APR-20 5MC0 1 REMARK REVDAT 3 26-SEP-18 5MC0 1 JRNL REVDAT 2 15-AUG-18 5MC0 1 JRNL REVDAT 1 20-DEC-17 5MC0 0 JRNL AUTH P.WILK,M.UEHLEIN,R.PIWOWARCZYK,H.DOBBEK,U.MUELLER,M.S.WEISS JRNL TITL STRUCTURAL BASIS FOR PROLIDASE DEFICIENCY DISEASE JRNL TITL 2 MECHANISMS. JRNL REF FEBS J. V. 285 3422 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 30066404 JRNL DOI 10.1111/FEBS.14620 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 168912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.118 REMARK 3 R VALUE (WORKING SET) : 0.116 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2765 - 4.8390 1.00 5650 298 0.1607 0.1692 REMARK 3 2 4.8390 - 3.8416 1.00 5482 289 0.1038 0.1189 REMARK 3 3 3.8416 - 3.3562 1.00 5429 285 0.1053 0.1367 REMARK 3 4 3.3562 - 3.0495 1.00 5416 285 0.1083 0.1399 REMARK 3 5 3.0495 - 2.8309 1.00 5404 285 0.1084 0.1466 REMARK 3 6 2.8309 - 2.6641 1.00 5370 282 0.1028 0.1459 REMARK 3 7 2.6641 - 2.5307 1.00 5412 285 0.0988 0.1446 REMARK 3 8 2.5307 - 2.4205 1.00 5338 281 0.0948 0.1344 REMARK 3 9 2.4205 - 2.3273 1.00 5379 283 0.0894 0.1309 REMARK 3 10 2.3273 - 2.2470 1.00 5378 283 0.0892 0.1338 REMARK 3 11 2.2470 - 2.1768 1.00 5344 282 0.0904 0.1335 REMARK 3 12 2.1768 - 2.1145 1.00 5376 283 0.0943 0.1358 REMARK 3 13 2.1145 - 2.0589 1.00 5336 280 0.0946 0.1404 REMARK 3 14 2.0589 - 2.0086 1.00 5340 281 0.0990 0.1433 REMARK 3 15 2.0086 - 1.9630 1.00 5305 280 0.1005 0.1447 REMARK 3 16 1.9630 - 1.9212 1.00 5329 280 0.1055 0.1516 REMARK 3 17 1.9212 - 1.8828 1.00 5378 283 0.1084 0.1644 REMARK 3 18 1.8828 - 1.8473 1.00 5357 282 0.1162 0.1904 REMARK 3 19 1.8473 - 1.8143 1.00 5304 279 0.1205 0.1671 REMARK 3 20 1.8143 - 1.7835 1.00 5318 280 0.1271 0.1817 REMARK 3 21 1.7835 - 1.7547 1.00 5319 280 0.1356 0.2015 REMARK 3 22 1.7547 - 1.7277 1.00 5374 283 0.1433 0.2139 REMARK 3 23 1.7277 - 1.7023 1.00 5253 277 0.1485 0.2088 REMARK 3 24 1.7023 - 1.6783 1.00 5351 281 0.1493 0.2271 REMARK 3 25 1.6783 - 1.6557 1.00 5345 282 0.1569 0.2147 REMARK 3 26 1.6557 - 1.6342 1.00 5307 279 0.1707 0.2248 REMARK 3 27 1.6342 - 1.6137 1.00 5349 281 0.1812 0.2416 REMARK 3 28 1.6137 - 1.5943 1.00 5239 275 0.2093 0.2599 REMARK 3 29 1.5943 - 1.5758 1.00 5381 284 0.2520 0.2921 REMARK 3 30 1.5758 - 1.5580 0.92 4903 258 0.2967 0.3494 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 8012 REMARK 3 ANGLE : 1.213 10866 REMARK 3 CHIRALITY : 0.053 1174 REMARK 3 PLANARITY : 0.006 1425 REMARK 3 DIHEDRAL : 13.796 3018 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND SEGID REMARK 3 SELECTION : CHAIN B AND SEGID REMARK 3 ATOM PAIRS NUMBER : 16 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MC0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR SI REMARK 200 -11 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 168926 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.558 REMARK 200 RESOLUTION RANGE LOW (A) : 48.153 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.360 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.97900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 5M4J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM NABORATE, 640MM NACITRATE, PH REMARK 280 7.4, VAPOR DIFFUSION, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.96350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 105.96350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.97150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.05650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.97150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.05650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 105.96350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.97150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.05650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 105.96350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.97150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.05650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 484 REMARK 465 PHE A 485 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C GLY B 503 N PRO B 504 1.35 REMARK 500 C GLY A 503 N PRO A 504 1.35 REMARK 500 O HOH B 1024 O HOH B 1186 2.16 REMARK 500 OE1 GLN A 28 O HOH A 603 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 -126.29 48.89 REMARK 500 TYR A 57 -127.82 49.02 REMARK 500 CYS A 244 75.67 -119.39 REMARK 500 TYR A 255 150.72 -48.78 REMARK 500 ASN B 13 -124.70 49.33 REMARK 500 TYR B 57 -127.45 48.85 REMARK 500 CYS B 244 76.18 -118.29 REMARK 500 TYR B 255 150.01 -49.31 REMARK 500 THR B 457 -169.94 -100.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1210 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B1234 DISTANCE = 5.88 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLY A 503 REMARK 610 GLY B 503 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 275 OD1 REMARK 620 2 ASP A 275 OD2 62.5 REMARK 620 3 ASP A 286 OD1 81.7 144.0 REMARK 620 4 GLU A 451 OE1 101.6 108.1 74.3 REMARK 620 5 OH A 501 O 149.8 87.4 128.0 83.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 499 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 286 OD2 REMARK 620 2 HIS A 369 NE2 96.3 REMARK 620 3 GLU A 411 OE2 157.4 81.5 REMARK 620 4 GLU A 451 OE2 80.4 112.1 79.6 REMARK 620 5 OH A 501 O 100.9 157.5 87.9 85.1 REMARK 620 6 GLY A 503 O 96.1 88.2 106.4 159.6 75.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 511 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 317 O REMARK 620 2 HOH A 700 O 163.8 REMARK 620 3 HOH A 708 O 87.3 101.7 REMARK 620 4 HOH A1036 O 87.7 77.4 101.8 REMARK 620 5 HOH A1144 O 98.4 72.1 173.8 76.1 REMARK 620 6 ALA B 39 O 64.6 121.2 24.6 91.0 159.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 515 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 210 O REMARK 620 2 VAL B 213 O 114.1 REMARK 620 3 HOH B 611 O 106.6 117.4 REMARK 620 4 HOH B1057 O 135.1 66.3 51.4 REMARK 620 5 HOH B1100 O 130.8 98.4 87.9 90.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 275 OD1 REMARK 620 2 ASP B 275 OD2 63.9 REMARK 620 3 ASP B 286 OD1 81.9 145.8 REMARK 620 4 GLU B 451 OE1 101.3 109.5 73.7 REMARK 620 5 OH B 501 O 154.7 91.0 122.8 83.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 499 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 286 OD2 REMARK 620 2 HIS B 369 NE2 96.1 REMARK 620 3 GLU B 411 OE2 159.6 80.5 REMARK 620 4 GLU B 451 OE2 83.4 113.0 79.5 REMARK 620 5 OH B 501 O 97.9 157.8 92.0 85.7 REMARK 620 6 GLY B 503 O 92.0 87.1 107.8 159.8 75.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PRO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OH B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PRO B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 515 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5M4J RELATED DB: PDB REMARK 900 WILD-TYPE HUMAN PROLIDASE REMARK 900 RELATED ID: 5MBY RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MBZ RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC1 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC2 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC3 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC4 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC5 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE DBREF 5MC0 A 6 485 UNP P12955 PEPD_HUMAN 6 486 DBREF 5MC0 B 6 485 UNP P12955 PEPD_HUMAN 6 486 SEQADV 5MC0 A UNP P12955 TYR 231 DELETION SEQADV 5MC0 B UNP P12955 TYR 231 DELETION SEQRES 1 A 480 GLY PRO SER PHE TRP LEU GLY ASN GLU THR LEU LYS VAL SEQRES 2 A 480 PRO LEU ALA LEU PHE ALA LEU ASN ARG GLN ARG LEU CYS SEQRES 3 A 480 GLU ARG LEU ARG LYS ASN PRO ALA VAL GLN ALA GLY SER SEQRES 4 A 480 ILE VAL VAL LEU GLN GLY GLY GLU GLU THR GLN ARG TYR SEQRES 5 A 480 CYS THR ASP THR GLY VAL LEU PHE ARG GLN GLU SER PHE SEQRES 6 A 480 PHE HIS TRP ALA PHE GLY VAL THR GLU PRO GLY CYS TYR SEQRES 7 A 480 GLY VAL ILE ASP VAL ASP THR GLY LYS SER THR LEU PHE SEQRES 8 A 480 VAL PRO ARG LEU PRO ALA SER HIS ALA THR TRP MET GLY SEQRES 9 A 480 LYS ILE HIS SER LYS GLU HIS PHE LYS GLU LYS TYR ALA SEQRES 10 A 480 VAL ASP ASP VAL GLN TYR VAL ASP GLU ILE ALA SER VAL SEQRES 11 A 480 LEU THR SER GLN LYS PRO SER VAL LEU LEU THR LEU ARG SEQRES 12 A 480 GLY VAL ASN THR ASP SER GLY SER VAL CYS ARG GLU ALA SEQRES 13 A 480 SER PHE ASP GLY ILE SER LYS PHE GLU VAL ASN ASN THR SEQRES 14 A 480 ILE LEU HIS PRO GLU ILE VAL GLU CYS ARG VAL PHE LYS SEQRES 15 A 480 THR ASP MET GLU LEU GLU VAL LEU ARG TYR THR ASN LYS SEQRES 16 A 480 ILE SER SER GLU ALA HIS ARG GLU VAL MET LYS ALA VAL SEQRES 17 A 480 LYS VAL GLY MET LYS GLU TYR GLU LEU GLU SER LEU PHE SEQRES 18 A 480 GLU HIS TYR CYS SER ARG GLY GLY MET ARG HIS SER SER SEQRES 19 A 480 TYR THR CYS ILE CYS GLY SER GLY GLU ASN SER ALA VAL SEQRES 20 A 480 LEU HIS TYR GLY HIS ALA GLY ALA PRO ASN ASP ARG THR SEQRES 21 A 480 ILE GLN ASN GLY ASP MET CYS LEU PHE ASP MET GLY GLY SEQRES 22 A 480 GLU TYR TYR CYS PHE ALA SER ASP ILE THR CYS SER PHE SEQRES 23 A 480 PRO ALA ASN GLY LYS PHE THR ALA ASP GLN LYS ALA VAL SEQRES 24 A 480 TYR GLU ALA VAL LEU ARG SER SER ARG ALA VAL MET GLY SEQRES 25 A 480 ALA MET LYS PRO GLY VAL TRP TRP PRO ASP MET HIS ARG SEQRES 26 A 480 LEU ALA ASP ARG ILE HIS LEU GLU GLU LEU ALA HIS MET SEQRES 27 A 480 GLY ILE LEU SER GLY SER VAL ASP ALA MET VAL GLN ALA SEQRES 28 A 480 HIS LEU GLY ALA VAL PHE MET PRO HIS GLY LEU GLY HIS SEQRES 29 A 480 PHE LEU GLY ILE ASP VAL HIS ASP VAL GLY GLY TYR PRO SEQRES 30 A 480 GLU GLY VAL GLU ARG ILE ASP GLU PRO GLY LEU ARG SER SEQRES 31 A 480 LEU ARG THR ALA ARG HIS LEU GLN PRO GLY MET VAL LEU SEQRES 32 A 480 THR VAL GLU PRO GLY ILE TYR PHE ILE ASP HIS LEU LEU SEQRES 33 A 480 ASP GLU ALA LEU ALA ASP PRO ALA ARG ALA SER PHE LEU SEQRES 34 A 480 ASN ARG GLU VAL LEU GLN ARG PHE ARG GLY PHE GLY GLY SEQRES 35 A 480 VAL ARG ILE GLU GLU ASP VAL VAL VAL THR ASP SER GLY SEQRES 36 A 480 ILE GLU LEU LEU THR CYS VAL PRO ARG THR VAL GLU GLU SEQRES 37 A 480 ILE GLU ALA CYS MET ALA GLY CYS ASP LYS ALA PHE SEQRES 1 B 480 GLY PRO SER PHE TRP LEU GLY ASN GLU THR LEU LYS VAL SEQRES 2 B 480 PRO LEU ALA LEU PHE ALA LEU ASN ARG GLN ARG LEU CYS SEQRES 3 B 480 GLU ARG LEU ARG LYS ASN PRO ALA VAL GLN ALA GLY SER SEQRES 4 B 480 ILE VAL VAL LEU GLN GLY GLY GLU GLU THR GLN ARG TYR SEQRES 5 B 480 CYS THR ASP THR GLY VAL LEU PHE ARG GLN GLU SER PHE SEQRES 6 B 480 PHE HIS TRP ALA PHE GLY VAL THR GLU PRO GLY CYS TYR SEQRES 7 B 480 GLY VAL ILE ASP VAL ASP THR GLY LYS SER THR LEU PHE SEQRES 8 B 480 VAL PRO ARG LEU PRO ALA SER HIS ALA THR TRP MET GLY SEQRES 9 B 480 LYS ILE HIS SER LYS GLU HIS PHE LYS GLU LYS TYR ALA SEQRES 10 B 480 VAL ASP ASP VAL GLN TYR VAL ASP GLU ILE ALA SER VAL SEQRES 11 B 480 LEU THR SER GLN LYS PRO SER VAL LEU LEU THR LEU ARG SEQRES 12 B 480 GLY VAL ASN THR ASP SER GLY SER VAL CYS ARG GLU ALA SEQRES 13 B 480 SER PHE ASP GLY ILE SER LYS PHE GLU VAL ASN ASN THR SEQRES 14 B 480 ILE LEU HIS PRO GLU ILE VAL GLU CYS ARG VAL PHE LYS SEQRES 15 B 480 THR ASP MET GLU LEU GLU VAL LEU ARG TYR THR ASN LYS SEQRES 16 B 480 ILE SER SER GLU ALA HIS ARG GLU VAL MET LYS ALA VAL SEQRES 17 B 480 LYS VAL GLY MET LYS GLU TYR GLU LEU GLU SER LEU PHE SEQRES 18 B 480 GLU HIS TYR CYS SER ARG GLY GLY MET ARG HIS SER SER SEQRES 19 B 480 TYR THR CYS ILE CYS GLY SER GLY GLU ASN SER ALA VAL SEQRES 20 B 480 LEU HIS TYR GLY HIS ALA GLY ALA PRO ASN ASP ARG THR SEQRES 21 B 480 ILE GLN ASN GLY ASP MET CYS LEU PHE ASP MET GLY GLY SEQRES 22 B 480 GLU TYR TYR CYS PHE ALA SER ASP ILE THR CYS SER PHE SEQRES 23 B 480 PRO ALA ASN GLY LYS PHE THR ALA ASP GLN LYS ALA VAL SEQRES 24 B 480 TYR GLU ALA VAL LEU ARG SER SER ARG ALA VAL MET GLY SEQRES 25 B 480 ALA MET LYS PRO GLY VAL TRP TRP PRO ASP MET HIS ARG SEQRES 26 B 480 LEU ALA ASP ARG ILE HIS LEU GLU GLU LEU ALA HIS MET SEQRES 27 B 480 GLY ILE LEU SER GLY SER VAL ASP ALA MET VAL GLN ALA SEQRES 28 B 480 HIS LEU GLY ALA VAL PHE MET PRO HIS GLY LEU GLY HIS SEQRES 29 B 480 PHE LEU GLY ILE ASP VAL HIS ASP VAL GLY GLY TYR PRO SEQRES 30 B 480 GLU GLY VAL GLU ARG ILE ASP GLU PRO GLY LEU ARG SER SEQRES 31 B 480 LEU ARG THR ALA ARG HIS LEU GLN PRO GLY MET VAL LEU SEQRES 32 B 480 THR VAL GLU PRO GLY ILE TYR PHE ILE ASP HIS LEU LEU SEQRES 33 B 480 ASP GLU ALA LEU ALA ASP PRO ALA ARG ALA SER PHE LEU SEQRES 34 B 480 ASN ARG GLU VAL LEU GLN ARG PHE ARG GLY PHE GLY GLY SEQRES 35 B 480 VAL ARG ILE GLU GLU ASP VAL VAL VAL THR ASP SER GLY SEQRES 36 B 480 ILE GLU LEU LEU THR CYS VAL PRO ARG THR VAL GLU GLU SEQRES 37 B 480 ILE GLU ALA CYS MET ALA GLY CYS ASP LYS ALA PHE HET MN A 499 1 HET MN A 500 1 HET OH A 501 1 HET GLY A 503 4 HET PRO A 504 8 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HET GOL A 509 6 HET GOL A 510 6 HET NA A 511 1 HET MN B 499 1 HET MN B 500 1 HET OH B 501 1 HET GLY B 503 4 HET PRO B 504 8 HET CL B 506 1 HET GOL B 507 6 HET GOL B 508 6 HET GOL B 509 6 HET GOL B 510 6 HET GOL B 511 6 HET GOL B 512 6 HET GOL B 513 6 HET GOL B 514 6 HET NA B 515 1 HETNAM MN MANGANESE (II) ION HETNAM OH HYDROXIDE ION HETNAM GLY GLYCINE HETNAM PRO PROLINE HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN 4(MN 2+) FORMUL 5 OH 2(H O 1-) FORMUL 6 GLY 2(C2 H5 N O2) FORMUL 7 PRO 2(C5 H9 N O2) FORMUL 8 GOL 13(C3 H8 O3) FORMUL 13 NA 2(NA 1+) FORMUL 19 CL CL 1- FORMUL 29 HOH *1244(H2 O) HELIX 1 AA1 LEU A 20 ASN A 37 1 18 HELIX 2 AA2 GLU A 68 GLY A 76 1 9 HELIX 3 AA3 SER A 103 MET A 108 1 6 HELIX 4 AA4 SER A 113 ALA A 122 1 10 HELIX 5 AA5 GLU A 131 LYS A 140 1 10 HELIX 6 AA6 GLY A 165 PHE A 169 5 5 HELIX 7 AA7 ILE A 175 PHE A 186 1 12 HELIX 8 AA8 THR A 188 VAL A 213 1 26 HELIX 9 AA9 LYS A 218 GLY A 233 1 16 HELIX 10 AB1 GLU A 248 VAL A 252 5 5 HELIX 11 AB2 THR A 298 MET A 319 1 22 HELIX 12 AB3 TRP A 324 MET A 343 1 20 HELIX 13 AB4 SER A 349 ALA A 356 1 8 HELIX 14 AB5 LEU A 358 MET A 363 1 6 HELIX 15 AB6 GLY A 392 LEU A 396 5 5 HELIX 16 AB7 ILE A 417 ASP A 427 1 11 HELIX 17 AB8 ASP A 427 SER A 432 1 6 HELIX 18 AB9 ASN A 435 GLN A 440 1 6 HELIX 19 AC1 ARG A 441 ARG A 443 5 3 HELIX 20 AC2 THR A 470 ALA A 479 1 10 HELIX 21 AC3 LEU B 20 LYS B 36 1 17 HELIX 22 AC4 GLU B 68 GLY B 76 1 9 HELIX 23 AC5 SER B 103 MET B 108 1 6 HELIX 24 AC6 SER B 113 ALA B 122 1 10 HELIX 25 AC7 GLU B 131 LYS B 140 1 10 HELIX 26 AC8 GLY B 165 PHE B 169 5 5 HELIX 27 AC9 ILE B 175 PHE B 186 1 12 HELIX 28 AD1 THR B 188 VAL B 213 1 26 HELIX 29 AD2 LYS B 218 GLY B 233 1 16 HELIX 30 AD3 GLU B 248 VAL B 252 5 5 HELIX 31 AD4 THR B 298 MET B 319 1 22 HELIX 32 AD5 TRP B 324 MET B 343 1 20 HELIX 33 AD6 SER B 349 ALA B 356 1 8 HELIX 34 AD7 LEU B 358 MET B 363 1 6 HELIX 35 AD8 GLY B 392 LEU B 396 5 5 HELIX 36 AD9 ILE B 417 ASP B 427 1 11 HELIX 37 AE1 ARG B 430 LEU B 434 5 5 HELIX 38 AE2 ASN B 435 GLN B 440 1 6 HELIX 39 AE3 ARG B 441 ARG B 443 5 3 HELIX 40 AE4 THR B 470 ALA B 479 1 10 SHEET 1 AA1 2 SER A 8 PHE A 9 0 SHEET 2 AA1 2 VAL A 18 PRO A 19 -1 O VAL A 18 N PHE A 9 SHEET 1 AA2 6 ASP A 125 TYR A 128 0 SHEET 2 AA2 6 SER A 93 VAL A 97 1 N LEU A 95 O ASP A 125 SHEET 3 AA2 6 TYR A 83 ASP A 87 -1 N TYR A 83 O PHE A 96 SHEET 4 AA2 6 ILE A 45 GLN A 49 -1 N LEU A 48 O GLY A 84 SHEET 5 AA2 6 LEU A 144 LEU A 145 1 O LEU A 145 N ILE A 45 SHEET 6 AA2 6 VAL A 171 ASN A 172 1 O ASN A 172 N LEU A 144 SHEET 1 AA3 2 HIS A 237 SER A 238 0 SHEET 2 AA3 2 GLY A 278 GLU A 279 -1 O GLU A 279 N HIS A 237 SHEET 1 AA4 3 ILE A 243 SER A 246 0 SHEET 2 AA4 3 MET A 271 MET A 276 -1 O ASP A 275 N ILE A 243 SHEET 3 AA4 3 ILE A 287 PRO A 292 -1 O CYS A 289 N PHE A 274 SHEET 1 AA5 3 VAL A 407 VAL A 410 0 SHEET 2 AA5 3 GLU A 452 VAL A 456 -1 O VAL A 454 N LEU A 408 SHEET 3 AA5 3 ILE A 461 LEU A 463 -1 O GLU A 462 N VAL A 455 SHEET 1 AA6 2 GLY A 413 TYR A 415 0 SHEET 2 AA6 2 GLY A 447 ARG A 449 -1 O VAL A 448 N ILE A 414 SHEET 1 AA7 2 SER B 8 PHE B 9 0 SHEET 2 AA7 2 VAL B 18 PRO B 19 -1 O VAL B 18 N PHE B 9 SHEET 1 AA8 6 ASP B 125 TYR B 128 0 SHEET 2 AA8 6 SER B 93 VAL B 97 1 N VAL B 97 O GLN B 127 SHEET 3 AA8 6 TYR B 83 ASP B 87 -1 N TYR B 83 O PHE B 96 SHEET 4 AA8 6 ILE B 45 GLN B 49 -1 N VAL B 46 O ILE B 86 SHEET 5 AA8 6 LEU B 144 LEU B 145 1 O LEU B 145 N ILE B 45 SHEET 6 AA8 6 VAL B 171 ASN B 172 1 O ASN B 172 N LEU B 144 SHEET 1 AA9 2 THR B 54 GLN B 55 0 SHEET 2 AA9 2 GLY B 62 VAL B 63 -1 O VAL B 63 N THR B 54 SHEET 1 AB1 2 HIS B 237 SER B 238 0 SHEET 2 AB1 2 GLY B 278 GLU B 279 -1 O GLU B 279 N HIS B 237 SHEET 1 AB2 3 ILE B 243 SER B 246 0 SHEET 2 AB2 3 MET B 271 MET B 276 -1 O ASP B 275 N ILE B 243 SHEET 3 AB2 3 ILE B 287 PRO B 292 -1 O PHE B 291 N CYS B 272 SHEET 1 AB3 3 VAL B 407 VAL B 410 0 SHEET 2 AB3 3 GLU B 452 VAL B 456 -1 O VAL B 454 N LEU B 408 SHEET 3 AB3 3 ILE B 461 LEU B 463 -1 O GLU B 462 N VAL B 455 SHEET 1 AB4 2 GLY B 413 TYR B 415 0 SHEET 2 AB4 2 GLY B 447 ARG B 449 -1 O VAL B 448 N ILE B 414 SSBOND 1 CYS A 481 CYS A 481 1555 3555 2.03 SSBOND 2 CYS B 481 CYS B 481 1555 3555 2.01 LINK OD1 ASP A 275 MN MN A 500 1555 1555 2.12 LINK OD2 ASP A 275 MN MN A 500 1555 1555 2.14 LINK OD2 ASP A 286 MN MN A 499 1555 1555 2.29 LINK OD1 ASP A 286 MN MN A 500 1555 1555 2.22 LINK O GLY A 317 NA NA A 511 1555 1555 2.26 LINK NE2 HIS A 369 MN MN A 499 1555 1555 2.40 LINK OE2 GLU A 411 MN MN A 499 1555 1555 2.33 LINK OE2 GLU A 451 MN MN A 499 1555 1555 2.47 LINK OE1 GLU A 451 MN MN A 500 1555 1555 2.38 LINK MN MN A 499 O OH A 501 1555 1555 2.37 LINK MN MN A 499 O GLY A 503 1555 1555 2.52 LINK MN MN A 500 O OH A 501 1555 1555 1.80 LINK NA NA A 511 O HOH A 700 1555 1555 2.34 LINK NA NA A 511 O HOH A 708 1555 1555 2.37 LINK NA NA A 511 O HOH A1036 1555 1555 2.29 LINK NA NA A 511 O HOH A1144 1555 1555 3.10 LINK NA NA A 511 O ALA B 39 5555 1555 2.29 LINK O MET B 210 NA NA B 515 1555 1555 2.82 LINK O VAL B 213 NA NA B 515 1555 1555 2.80 LINK OD1 ASP B 275 MN MN B 500 1555 1555 2.10 LINK OD2 ASP B 275 MN MN B 500 1555 1555 2.09 LINK OD2 ASP B 286 MN MN B 499 1555 1555 2.29 LINK OD1 ASP B 286 MN MN B 500 1555 1555 2.24 LINK NE2 HIS B 369 MN MN B 499 1555 1555 2.38 LINK OE2 GLU B 411 MN MN B 499 1555 1555 2.32 LINK OE2 GLU B 451 MN MN B 499 1555 1555 2.40 LINK OE1 GLU B 451 MN MN B 500 1555 1555 2.42 LINK MN MN B 499 O OH B 501 1555 1555 2.31 LINK MN MN B 499 O GLY B 503 1555 1555 2.57 LINK MN MN B 500 O OH B 501 1555 1555 1.76 LINK NA NA B 515 O HOH B 611 1555 1555 2.52 LINK NA NA B 515 O HOH B1057 1555 1555 3.04 LINK NA NA B 515 O HOH B1100 1555 1555 2.78 SITE 1 AC1 7 ASP A 286 HIS A 369 GLU A 411 GLU A 451 SITE 2 AC1 7 MN A 500 OH A 501 GLY A 503 SITE 1 AC2 7 ASP A 275 ASP A 286 THR A 288 GLU A 451 SITE 2 AC2 7 MN A 499 OH A 501 GLY A 503 SITE 1 AC3 8 ASP A 275 ASP A 286 GLU A 411 GLU A 451 SITE 2 AC3 8 MN A 499 MN A 500 GLY A 503 PRO A 504 SITE 1 AC4 10 TYR A 240 ASP A 275 ASP A 286 HIS A 369 SITE 2 AC4 10 HIS A 376 MN A 499 MN A 500 OH A 501 SITE 3 AC4 10 PRO A 504 HOH A 648 SITE 1 AC5 11 HIS A 254 HIS A 365 HIS A 376 ARG A 397 SITE 2 AC5 11 GLU A 411 ARG A 449 OH A 501 GLY A 503 SITE 3 AC5 11 HOH A 764 HOH A 824 TRP B 107 SITE 1 AC6 8 TRP A 10 LEU A 11 LYS A 120 HOH A 609 SITE 2 AC6 8 HOH A 619 HOH A 720 HOH A 828 ASP B 263 SITE 1 AC7 4 THR A 152 GLU A 386 ARG A 387 HOH A 921 SITE 1 AC8 4 GLY A 384 GLU A 386 ALA A 399 HOH A 655 SITE 1 AC9 7 ARG A 29 ARG A 33 LYS A 36 GLU A 182 SITE 2 AC9 7 PHE A 186 HOH A 607 HOH A1016 SITE 1 AD1 5 PRO A 141 LYS A 168 PHE A 169 HOH A 836 SITE 2 AD1 5 HOH A 851 SITE 1 AD2 6 GLY A 317 HOH A 700 HOH A 708 HOH A1036 SITE 2 AD2 6 HOH A1144 ALA B 39 SITE 1 AD3 7 ASP B 286 HIS B 369 GLU B 411 GLU B 451 SITE 2 AD3 7 MN B 500 OH B 501 GLY B 503 SITE 1 AD4 7 ASP B 275 ASP B 286 THR B 288 GLU B 451 SITE 2 AD4 7 MN B 499 OH B 501 GLY B 503 SITE 1 AD5 8 ASP B 275 ASP B 286 GLU B 411 GLU B 451 SITE 2 AD5 8 MN B 499 MN B 500 GLY B 503 PRO B 504 SITE 1 AD6 10 TYR B 240 ASP B 275 ASP B 286 HIS B 369 SITE 2 AD6 10 HIS B 376 MN B 499 MN B 500 OH B 501 SITE 3 AD6 10 PRO B 504 HOH B 778 SITE 1 AD7 10 HIS B 254 HIS B 365 HIS B 376 ARG B 397 SITE 2 AD7 10 GLU B 411 ARG B 449 OH B 501 GLY B 503 SITE 3 AD7 10 HOH B 743 HOH B 900 SITE 1 AD8 3 ARG B 436 GLN B 440 ARG B 443 SITE 1 AD9 8 ASP A 263 PHE B 9 TRP B 10 LEU B 11 SITE 2 AD9 8 HOH B 622 HOH B 645 HOH B 722 HOH B 785 SITE 1 AE1 5 GLU B 14 TYR B 197 LYS B 200 HOH B 637 SITE 2 AE1 5 HOH B 641 SITE 1 AE2 6 SER B 134 SER B 138 GLY B 348 SER B 349 SITE 2 AE2 6 VAL B 350 ASP B 351 SITE 1 AE3 4 GLU B 386 ARG B 387 HOH B 834 HOH B 848 SITE 1 AE4 6 PHE B 163 ASP B 164 GLY B 165 ILE B 166 SITE 2 AE4 6 SER B 167 HOH B 625 SITE 1 AE5 6 TYR B 83 VAL B 129 PHE B 163 ASP B 164 SITE 2 AE5 6 HOH B 617 HOH B 991 SITE 1 AE6 4 LYS B 168 HOH B 602 HOH B 609 HOH B 614 SITE 1 AE7 2 HIS A 228 HIS B 228 SITE 1 AE8 7 MET B 210 LYS B 211 VAL B 213 MET B 478 SITE 2 AE8 7 HOH B 611 HOH B1057 HOH B1100 CRYST1 103.943 108.113 211.927 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009621 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009250 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004719 0.00000