HEADER HYDROLASE 09-NOV-16 5MC1 TITLE CRYSTAL STRUCTURE OF ASP276ASN MUTANT OF HUMAN PROLIDASE WITH MN IONS TITLE 2 AND GLYPRO LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: XAA-PRO DIPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: X-PRO DIPEPTIDASE,IMIDODIPEPTIDASE,PEPTIDASE D,PROLINE COMPND 5 DIPEPTIDASE,PROLIDASE; COMPND 6 EC: 3.4.13.9; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PEPD, PRD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PROLIDASE, PEPTIDASE, HYDROLYSIS, PITA-BREAD, METALLOENZYME, KEYWDS 2 MUTATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.WILK,U.MUELLER,H.DOBBEK,M.S.WEISS REVDAT 5 17-JAN-24 5MC1 1 LINK REVDAT 4 22-APR-20 5MC1 1 REMARK REVDAT 3 26-SEP-18 5MC1 1 JRNL REVDAT 2 15-AUG-18 5MC1 1 JRNL REVDAT 1 20-DEC-17 5MC1 0 JRNL AUTH P.WILK,M.UEHLEIN,R.PIWOWARCZYK,H.DOBBEK,U.MUELLER,M.S.WEISS JRNL TITL STRUCTURAL BASIS FOR PROLIDASE DEFICIENCY DISEASE JRNL TITL 2 MECHANISMS. JRNL REF FEBS J. V. 285 3422 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 30066404 JRNL DOI 10.1111/FEBS.14620 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 219697 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 10986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9255 - 4.4364 1.00 7294 385 0.1289 0.1393 REMARK 3 2 4.4364 - 3.5216 1.00 7113 374 0.0932 0.1200 REMARK 3 3 3.5216 - 3.0766 1.00 7068 372 0.1066 0.1442 REMARK 3 4 3.0766 - 2.7953 1.00 7036 371 0.1135 0.1338 REMARK 3 5 2.7953 - 2.5950 1.00 7020 369 0.1102 0.1384 REMARK 3 6 2.5950 - 2.4420 1.00 7001 369 0.1063 0.1435 REMARK 3 7 2.4420 - 2.3197 1.00 6965 366 0.1048 0.1299 REMARK 3 8 2.3197 - 2.2187 1.00 7000 368 0.1040 0.1328 REMARK 3 9 2.2187 - 2.1333 1.00 6972 367 0.1072 0.1452 REMARK 3 10 2.1333 - 2.0597 1.00 6948 366 0.1091 0.1346 REMARK 3 11 2.0597 - 1.9953 1.00 6987 368 0.1109 0.1397 REMARK 3 12 1.9953 - 1.9382 1.00 6969 367 0.1178 0.1449 REMARK 3 13 1.9382 - 1.8872 1.00 6962 366 0.1229 0.1552 REMARK 3 14 1.8872 - 1.8412 1.00 6948 366 0.1281 0.1745 REMARK 3 15 1.8412 - 1.7993 1.00 6957 366 0.1373 0.1817 REMARK 3 16 1.7993 - 1.7610 1.00 6921 364 0.1430 0.1781 REMARK 3 17 1.7610 - 1.7258 1.00 6903 363 0.1455 0.1656 REMARK 3 18 1.7258 - 1.6932 1.00 6953 366 0.1577 0.2034 REMARK 3 19 1.6932 - 1.6630 1.00 6961 367 0.1647 0.1952 REMARK 3 20 1.6630 - 1.6348 1.00 6947 365 0.1737 0.2013 REMARK 3 21 1.6348 - 1.6084 1.00 6929 365 0.1869 0.2166 REMARK 3 22 1.6084 - 1.5837 1.00 6917 364 0.1936 0.2277 REMARK 3 23 1.5837 - 1.5604 1.00 6942 366 0.2050 0.2323 REMARK 3 24 1.5604 - 1.5384 1.00 6943 365 0.2135 0.2296 REMARK 3 25 1.5384 - 1.5176 1.00 6828 359 0.2198 0.2460 REMARK 3 26 1.5176 - 1.4979 1.00 6975 367 0.2374 0.2650 REMARK 3 27 1.4979 - 1.4792 1.00 6905 364 0.2599 0.2629 REMARK 3 28 1.4792 - 1.4614 1.00 6929 365 0.2726 0.2995 REMARK 3 29 1.4614 - 1.4444 1.00 6907 363 0.2863 0.3080 REMARK 3 30 1.4444 - 1.4281 0.95 6511 343 0.3395 0.3328 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 8107 REMARK 3 ANGLE : 1.215 11014 REMARK 3 CHIRALITY : 0.071 1192 REMARK 3 PLANARITY : 0.006 1444 REMARK 3 DIHEDRAL : 12.963 3062 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0770 15.1981 96.5645 REMARK 3 T TENSOR REMARK 3 T11: 0.1428 T22: 0.1289 REMARK 3 T33: 0.2732 T12: 0.0061 REMARK 3 T13: 0.0848 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 1.8597 L22: 2.1140 REMARK 3 L33: 4.0307 L12: -0.7523 REMARK 3 L13: 1.6130 L23: -1.6531 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.1334 S13: -0.1243 REMARK 3 S21: 0.2706 S22: 0.0966 S23: 0.2612 REMARK 3 S31: -0.0186 S32: -0.2403 S33: -0.0445 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1012 16.3295 86.7794 REMARK 3 T TENSOR REMARK 3 T11: 0.0990 T22: 0.1215 REMARK 3 T33: 0.2334 T12: 0.0023 REMARK 3 T13: 0.0060 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 0.3142 L22: 0.7851 REMARK 3 L33: 0.2717 L12: -0.1242 REMARK 3 L13: -0.0342 L23: 0.0317 REMARK 3 S TENSOR REMARK 3 S11: -0.0156 S12: -0.0129 S13: -0.0434 REMARK 3 S21: 0.1443 S22: 0.0185 S23: 0.0456 REMARK 3 S31: -0.0001 S32: -0.0286 S33: -0.0044 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 320 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6066 -7.7338 82.0806 REMARK 3 T TENSOR REMARK 3 T11: 0.1147 T22: 0.1172 REMARK 3 T33: 0.2827 T12: 0.0002 REMARK 3 T13: -0.0137 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 0.7711 L22: 1.4955 REMARK 3 L33: 1.6388 L12: -0.6425 REMARK 3 L13: -0.7898 L23: 1.0436 REMARK 3 S TENSOR REMARK 3 S11: -0.0726 S12: -0.0227 S13: -0.1856 REMARK 3 S21: 0.1734 S22: 0.0727 S23: 0.0020 REMARK 3 S31: 0.2075 S32: 0.0943 S33: -0.0158 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 408 THROUGH 443 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4626 -8.6789 67.6294 REMARK 3 T TENSOR REMARK 3 T11: 0.0999 T22: 0.1776 REMARK 3 T33: 0.3567 T12: 0.0055 REMARK 3 T13: 0.0006 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.9481 L22: 0.5953 REMARK 3 L33: 0.7156 L12: -0.2129 REMARK 3 L13: 0.7072 L23: -0.2376 REMARK 3 S TENSOR REMARK 3 S11: 0.1280 S12: 0.2454 S13: -0.1819 REMARK 3 S21: -0.0874 S22: -0.0798 S23: -0.1569 REMARK 3 S31: 0.0422 S32: 0.2326 S33: -0.0276 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 444 THROUGH 489 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1836 2.6728 70.1146 REMARK 3 T TENSOR REMARK 3 T11: 0.0993 T22: 0.1551 REMARK 3 T33: 0.3290 T12: -0.0075 REMARK 3 T13: -0.0166 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.2097 L22: 0.8719 REMARK 3 L33: 1.1676 L12: -0.2881 REMARK 3 L13: 0.0847 L23: 0.3220 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: 0.1682 S13: -0.0589 REMARK 3 S21: -0.0626 S22: -0.0695 S23: 0.1853 REMARK 3 S31: -0.0506 S32: -0.2091 S33: 0.0838 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5070 32.8587 61.9983 REMARK 3 T TENSOR REMARK 3 T11: 0.1145 T22: 0.1181 REMARK 3 T33: 0.3029 T12: 0.0113 REMARK 3 T13: 0.0628 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 3.4472 L22: 1.0716 REMARK 3 L33: 1.0716 L12: 1.2614 REMARK 3 L13: 0.6614 L23: 0.1683 REMARK 3 S TENSOR REMARK 3 S11: -0.0564 S12: 0.2355 S13: 0.1195 REMARK 3 S21: -0.2221 S22: 0.0514 S23: -0.1996 REMARK 3 S31: -0.0919 S32: 0.1019 S33: 0.0542 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2745 28.9765 73.7712 REMARK 3 T TENSOR REMARK 3 T11: 0.0771 T22: 0.1250 REMARK 3 T33: 0.2552 T12: 0.0019 REMARK 3 T13: 0.0008 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.5832 L22: 0.9244 REMARK 3 L33: 0.2305 L12: -0.0974 REMARK 3 L13: -0.0292 L23: 0.0575 REMARK 3 S TENSOR REMARK 3 S11: -0.0020 S12: 0.0240 S13: 0.0019 REMARK 3 S21: -0.0314 S22: 0.0225 S23: -0.1564 REMARK 3 S31: 0.0019 S32: 0.0120 S33: -0.0058 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 278 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1474 45.8178 68.3975 REMARK 3 T TENSOR REMARK 3 T11: 0.0912 T22: 0.1504 REMARK 3 T33: 0.3017 T12: 0.0236 REMARK 3 T13: -0.0249 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 0.7363 L22: 0.7617 REMARK 3 L33: 0.4456 L12: -0.1295 REMARK 3 L13: -0.3325 L23: 0.0792 REMARK 3 S TENSOR REMARK 3 S11: 0.0355 S12: 0.1339 S13: 0.1251 REMARK 3 S21: -0.1075 S22: -0.0133 S23: 0.1681 REMARK 3 S31: -0.0760 S32: -0.0797 S33: 0.0033 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 320 THROUGH 436 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8787 55.5247 79.2577 REMARK 3 T TENSOR REMARK 3 T11: 0.1166 T22: 0.1333 REMARK 3 T33: 0.3322 T12: 0.0157 REMARK 3 T13: -0.0102 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.4665 L22: 1.3309 REMARK 3 L33: 0.4876 L12: -0.7575 REMARK 3 L13: -0.5623 L23: 0.3711 REMARK 3 S TENSOR REMARK 3 S11: -0.0283 S12: -0.1031 S13: 0.3085 REMARK 3 S21: 0.0932 S22: 0.0632 S23: -0.0861 REMARK 3 S31: -0.0715 S32: 0.0249 S33: -0.0246 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 437 THROUGH 464 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2363 51.0769 73.3208 REMARK 3 T TENSOR REMARK 3 T11: 0.0872 T22: 0.1028 REMARK 3 T33: 0.3190 T12: -0.0051 REMARK 3 T13: -0.0123 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 3.9695 L22: 1.3246 REMARK 3 L33: 2.5808 L12: -0.5686 REMARK 3 L13: -2.0809 L23: -0.2001 REMARK 3 S TENSOR REMARK 3 S11: 0.1241 S12: -0.0667 S13: 0.2536 REMARK 3 S21: 0.0067 S22: -0.0464 S23: 0.1905 REMARK 3 S31: -0.1776 S32: -0.0304 S33: -0.0640 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 465 THROUGH 490 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5411 44.2751 59.4791 REMARK 3 T TENSOR REMARK 3 T11: 0.2001 T22: 0.2584 REMARK 3 T33: 0.3100 T12: 0.0308 REMARK 3 T13: -0.0562 T23: 0.0416 REMARK 3 L TENSOR REMARK 3 L11: 4.6421 L22: 0.3440 REMARK 3 L33: 1.8646 L12: -1.0826 REMARK 3 L13: 0.3698 L23: 0.3159 REMARK 3 S TENSOR REMARK 3 S11: 0.0528 S12: 0.7910 S13: -0.0636 REMARK 3 S21: -0.4384 S22: -0.1249 S23: 0.1754 REMARK 3 S31: -0.0798 S32: -0.1619 S33: 0.0206 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 2 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3089 4.3425 78.4639 REMARK 3 T TENSOR REMARK 3 T11: 0.1438 T22: 0.2952 REMARK 3 T33: 0.2587 T12: -0.0291 REMARK 3 T13: -0.0056 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 2.5477 L22: 6.2551 REMARK 3 L33: 4.6606 L12: 0.6112 REMARK 3 L13: 0.3704 L23: -5.2158 REMARK 3 S TENSOR REMARK 3 S11: 0.2548 S12: 0.7576 S13: -0.2232 REMARK 3 S21: 0.0564 S22: -0.3090 S23: -0.0985 REMARK 3 S31: -0.2832 S32: 0.6815 S33: 0.0463 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 2 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1601 43.1360 78.3058 REMARK 3 T TENSOR REMARK 3 T11: 0.1090 T22: 0.2800 REMARK 3 T33: 0.3229 T12: 0.0368 REMARK 3 T13: -0.0011 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 3.4375 L22: 4.6558 REMARK 3 L33: 2.3576 L12: 3.9986 REMARK 3 L13: -2.0217 L23: -2.2804 REMARK 3 S TENSOR REMARK 3 S11: 0.1211 S12: 0.3992 S13: -0.0795 REMARK 3 S21: -0.4051 S22: -0.3526 S23: 0.1187 REMARK 3 S31: -0.2667 S32: -1.2464 S33: 0.2233 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR SI REMARK 200 -11 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 219713 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.428 REMARK 200 RESOLUTION RANGE LOW (A) : 47.899 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.340 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.16 REMARK 200 R MERGE FOR SHELL (I) : 1.13900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 5M4J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM NABORATE, 760MM NACITRATE, PH REMARK 280 7.4, VAPOR DIFFUSION, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.14950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 108.14950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.70950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.42400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.70950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.42400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.14950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.70950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.42400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.14950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.70950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.42400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 699 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 490 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C GLY A 503 N PRO A 504 1.35 REMARK 500 C GLY B 503 N PRO B 504 1.36 REMARK 500 O HOH B 1020 O HOH B 1116 2.08 REMARK 500 O LEU A 435 O HOH A 601 2.10 REMARK 500 O HOH A 621 O HOH A 870 2.10 REMARK 500 O HOH A 1164 O HOH A 1204 2.11 REMARK 500 O HOH A 1034 O HOH A 1050 2.11 REMARK 500 OD2 ASP A 423 O HOH A 602 2.11 REMARK 500 OE1 GLN A 55 O HOH A 603 2.14 REMARK 500 O2 GOL A 506 O HOH A 601 2.16 REMARK 500 OE1 GLN A 268 O HOH A 604 2.19 REMARK 500 O HOH B 1071 O HOH B 1113 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 -126.16 51.52 REMARK 500 TYR A 57 -127.89 49.91 REMARK 500 CYS A 245 75.99 -120.00 REMARK 500 PRO A 262 57.23 -90.68 REMARK 500 PRO A 365 38.29 -89.32 REMARK 500 GLU A 412 59.73 -140.59 REMARK 500 PHE A 486 82.21 57.06 REMARK 500 ASN B 13 -126.07 49.92 REMARK 500 TYR B 57 -127.73 48.15 REMARK 500 CYS B 245 76.16 -118.59 REMARK 500 ALA B 261 68.54 -151.05 REMARK 500 PRO B 262 57.17 -90.19 REMARK 500 PRO B 365 37.72 -87.13 REMARK 500 LYS B 484 -1.81 70.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1233 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A1234 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A1235 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH B1255 DISTANCE = 6.03 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLY A 503 REMARK 610 GLY B 503 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 508 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 227 OE1 REMARK 620 2 HOH A 749 O 76.0 REMARK 620 3 HOH A 857 O 155.0 83.8 REMARK 620 4 HOH A1073 O 86.4 82.7 76.6 REMARK 620 5 HOH A1101 O 93.7 89.4 100.6 171.9 REMARK 620 6 HOH A1114 O 88.9 145.4 100.0 65.2 122.9 REMARK 620 7 HOH A1114 O 109.2 172.5 89.8 92.1 95.5 32.4 REMARK 620 8 HOH B1122 O 153.2 119.4 51.3 115.9 66.4 87.6 58.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 500 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 276 OD1 REMARK 620 2 GLU A 412 OE1 120.3 REMARK 620 3 GLU A 452 OE1 88.1 88.3 REMARK 620 4 GLY A 503 O 123.8 92.8 140.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 499 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 287 OD2 REMARK 620 2 HIS A 370 NE2 96.2 REMARK 620 3 GLU A 412 OE2 161.0 80.7 REMARK 620 4 GLU A 452 OE2 84.2 116.1 80.4 REMARK 620 5 GLY A 503 O 97.8 81.4 100.2 162.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 500 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 276 OD1 REMARK 620 2 GLU B 412 OE1 118.9 REMARK 620 3 GLU B 452 OE1 88.4 90.0 REMARK 620 4 GLU B 452 OE2 130.4 76.9 42.8 REMARK 620 5 GLY B 503 O 120.1 94.1 143.8 103.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 499 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 287 OD2 REMARK 620 2 HIS B 370 NE2 95.6 REMARK 620 3 GLU B 412 OE2 160.6 80.6 REMARK 620 4 GLU B 452 OE2 83.3 116.3 81.5 REMARK 620 5 GLY B 503 O 98.6 79.1 99.3 164.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PRO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PRO B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 511 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5M4J RELATED DB: PDB REMARK 900 WILD-TYPE HUMAN PROLIDASE REMARK 900 RELATED ID: 5MBY RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MBZ RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC0 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC2 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC3 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC4 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE REMARK 900 RELATED ID: 5MC5 RELATED DB: PDB REMARK 900 MUTATIONS OF HUMAN PROLIDASE DBREF 5MC1 A 6 490 UNP P12955 PEPD_HUMAN 6 490 DBREF 5MC1 B 6 490 UNP P12955 PEPD_HUMAN 6 490 SEQADV 5MC1 ASN A 276 UNP P12955 ASP 276 ENGINEERED MUTATION SEQADV 5MC1 ASN B 276 UNP P12955 ASP 276 ENGINEERED MUTATION SEQRES 1 A 485 GLY PRO SER PHE TRP LEU GLY ASN GLU THR LEU LYS VAL SEQRES 2 A 485 PRO LEU ALA LEU PHE ALA LEU ASN ARG GLN ARG LEU CYS SEQRES 3 A 485 GLU ARG LEU ARG LYS ASN PRO ALA VAL GLN ALA GLY SER SEQRES 4 A 485 ILE VAL VAL LEU GLN GLY GLY GLU GLU THR GLN ARG TYR SEQRES 5 A 485 CYS THR ASP THR GLY VAL LEU PHE ARG GLN GLU SER PHE SEQRES 6 A 485 PHE HIS TRP ALA PHE GLY VAL THR GLU PRO GLY CYS TYR SEQRES 7 A 485 GLY VAL ILE ASP VAL ASP THR GLY LYS SER THR LEU PHE SEQRES 8 A 485 VAL PRO ARG LEU PRO ALA SER HIS ALA THR TRP MET GLY SEQRES 9 A 485 LYS ILE HIS SER LYS GLU HIS PHE LYS GLU LYS TYR ALA SEQRES 10 A 485 VAL ASP ASP VAL GLN TYR VAL ASP GLU ILE ALA SER VAL SEQRES 11 A 485 LEU THR SER GLN LYS PRO SER VAL LEU LEU THR LEU ARG SEQRES 12 A 485 GLY VAL ASN THR ASP SER GLY SER VAL CYS ARG GLU ALA SEQRES 13 A 485 SER PHE ASP GLY ILE SER LYS PHE GLU VAL ASN ASN THR SEQRES 14 A 485 ILE LEU HIS PRO GLU ILE VAL GLU CYS ARG VAL PHE LYS SEQRES 15 A 485 THR ASP MET GLU LEU GLU VAL LEU ARG TYR THR ASN LYS SEQRES 16 A 485 ILE SER SER GLU ALA HIS ARG GLU VAL MET LYS ALA VAL SEQRES 17 A 485 LYS VAL GLY MET LYS GLU TYR GLU LEU GLU SER LEU PHE SEQRES 18 A 485 GLU HIS TYR CYS TYR SER ARG GLY GLY MET ARG HIS SER SEQRES 19 A 485 SER TYR THR CYS ILE CYS GLY SER GLY GLU ASN SER ALA SEQRES 20 A 485 VAL LEU HIS TYR GLY HIS ALA GLY ALA PRO ASN ASP ARG SEQRES 21 A 485 THR ILE GLN ASN GLY ASP MET CYS LEU PHE ASN MET GLY SEQRES 22 A 485 GLY GLU TYR TYR CYS PHE ALA SER ASP ILE THR CYS SER SEQRES 23 A 485 PHE PRO ALA ASN GLY LYS PHE THR ALA ASP GLN LYS ALA SEQRES 24 A 485 VAL TYR GLU ALA VAL LEU ARG SER SER ARG ALA VAL MET SEQRES 25 A 485 GLY ALA MET LYS PRO GLY VAL TRP TRP PRO ASP MET HIS SEQRES 26 A 485 ARG LEU ALA ASP ARG ILE HIS LEU GLU GLU LEU ALA HIS SEQRES 27 A 485 MET GLY ILE LEU SER GLY SER VAL ASP ALA MET VAL GLN SEQRES 28 A 485 ALA HIS LEU GLY ALA VAL PHE MET PRO HIS GLY LEU GLY SEQRES 29 A 485 HIS PHE LEU GLY ILE ASP VAL HIS ASP VAL GLY GLY TYR SEQRES 30 A 485 PRO GLU GLY VAL GLU ARG ILE ASP GLU PRO GLY LEU ARG SEQRES 31 A 485 SER LEU ARG THR ALA ARG HIS LEU GLN PRO GLY MET VAL SEQRES 32 A 485 LEU THR VAL GLU PRO GLY ILE TYR PHE ILE ASP HIS LEU SEQRES 33 A 485 LEU ASP GLU ALA LEU ALA ASP PRO ALA ARG ALA SER PHE SEQRES 34 A 485 LEU ASN ARG GLU VAL LEU GLN ARG PHE ARG GLY PHE GLY SEQRES 35 A 485 GLY VAL ARG ILE GLU GLU ASP VAL VAL VAL THR ASP SER SEQRES 36 A 485 GLY ILE GLU LEU LEU THR CYS VAL PRO ARG THR VAL GLU SEQRES 37 A 485 GLU ILE GLU ALA CYS MET ALA GLY CYS ASP LYS ALA PHE SEQRES 38 A 485 THR PRO PHE SER SEQRES 1 B 485 GLY PRO SER PHE TRP LEU GLY ASN GLU THR LEU LYS VAL SEQRES 2 B 485 PRO LEU ALA LEU PHE ALA LEU ASN ARG GLN ARG LEU CYS SEQRES 3 B 485 GLU ARG LEU ARG LYS ASN PRO ALA VAL GLN ALA GLY SER SEQRES 4 B 485 ILE VAL VAL LEU GLN GLY GLY GLU GLU THR GLN ARG TYR SEQRES 5 B 485 CYS THR ASP THR GLY VAL LEU PHE ARG GLN GLU SER PHE SEQRES 6 B 485 PHE HIS TRP ALA PHE GLY VAL THR GLU PRO GLY CYS TYR SEQRES 7 B 485 GLY VAL ILE ASP VAL ASP THR GLY LYS SER THR LEU PHE SEQRES 8 B 485 VAL PRO ARG LEU PRO ALA SER HIS ALA THR TRP MET GLY SEQRES 9 B 485 LYS ILE HIS SER LYS GLU HIS PHE LYS GLU LYS TYR ALA SEQRES 10 B 485 VAL ASP ASP VAL GLN TYR VAL ASP GLU ILE ALA SER VAL SEQRES 11 B 485 LEU THR SER GLN LYS PRO SER VAL LEU LEU THR LEU ARG SEQRES 12 B 485 GLY VAL ASN THR ASP SER GLY SER VAL CYS ARG GLU ALA SEQRES 13 B 485 SER PHE ASP GLY ILE SER LYS PHE GLU VAL ASN ASN THR SEQRES 14 B 485 ILE LEU HIS PRO GLU ILE VAL GLU CYS ARG VAL PHE LYS SEQRES 15 B 485 THR ASP MET GLU LEU GLU VAL LEU ARG TYR THR ASN LYS SEQRES 16 B 485 ILE SER SER GLU ALA HIS ARG GLU VAL MET LYS ALA VAL SEQRES 17 B 485 LYS VAL GLY MET LYS GLU TYR GLU LEU GLU SER LEU PHE SEQRES 18 B 485 GLU HIS TYR CYS TYR SER ARG GLY GLY MET ARG HIS SER SEQRES 19 B 485 SER TYR THR CYS ILE CYS GLY SER GLY GLU ASN SER ALA SEQRES 20 B 485 VAL LEU HIS TYR GLY HIS ALA GLY ALA PRO ASN ASP ARG SEQRES 21 B 485 THR ILE GLN ASN GLY ASP MET CYS LEU PHE ASN MET GLY SEQRES 22 B 485 GLY GLU TYR TYR CYS PHE ALA SER ASP ILE THR CYS SER SEQRES 23 B 485 PHE PRO ALA ASN GLY LYS PHE THR ALA ASP GLN LYS ALA SEQRES 24 B 485 VAL TYR GLU ALA VAL LEU ARG SER SER ARG ALA VAL MET SEQRES 25 B 485 GLY ALA MET LYS PRO GLY VAL TRP TRP PRO ASP MET HIS SEQRES 26 B 485 ARG LEU ALA ASP ARG ILE HIS LEU GLU GLU LEU ALA HIS SEQRES 27 B 485 MET GLY ILE LEU SER GLY SER VAL ASP ALA MET VAL GLN SEQRES 28 B 485 ALA HIS LEU GLY ALA VAL PHE MET PRO HIS GLY LEU GLY SEQRES 29 B 485 HIS PHE LEU GLY ILE ASP VAL HIS ASP VAL GLY GLY TYR SEQRES 30 B 485 PRO GLU GLY VAL GLU ARG ILE ASP GLU PRO GLY LEU ARG SEQRES 31 B 485 SER LEU ARG THR ALA ARG HIS LEU GLN PRO GLY MET VAL SEQRES 32 B 485 LEU THR VAL GLU PRO GLY ILE TYR PHE ILE ASP HIS LEU SEQRES 33 B 485 LEU ASP GLU ALA LEU ALA ASP PRO ALA ARG ALA SER PHE SEQRES 34 B 485 LEU ASN ARG GLU VAL LEU GLN ARG PHE ARG GLY PHE GLY SEQRES 35 B 485 GLY VAL ARG ILE GLU GLU ASP VAL VAL VAL THR ASP SER SEQRES 36 B 485 GLY ILE GLU LEU LEU THR CYS VAL PRO ARG THR VAL GLU SEQRES 37 B 485 GLU ILE GLU ALA CYS MET ALA GLY CYS ASP LYS ALA PHE SEQRES 38 B 485 THR PRO PHE SER HET MN A 499 1 HET NA A 500 1 HET GLY A 503 4 HET PRO A 504 8 HET GOL A 505 6 HET GOL A 506 12 HET GOL A 507 6 HET NA A 508 1 HET MN B 499 1 HET NA B 500 1 HET GLY B 503 4 HET PRO B 504 8 HET GOL B 505 6 HET GOL B 506 12 HET GOL B 507 6 HET GOL B 508 6 HET GOL B 509 6 HET GOL B 510 6 HET GOL B 511 6 HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION HETNAM GLY GLYCINE HETNAM PRO PROLINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN 2(MN 2+) FORMUL 4 NA 3(NA 1+) FORMUL 5 GLY 2(C2 H5 N O2) FORMUL 6 PRO 2(C5 H9 N O2) FORMUL 7 GOL 10(C3 H8 O3) FORMUL 22 HOH *1290(H2 O) HELIX 1 AA1 LEU A 20 ASN A 37 1 18 HELIX 2 AA2 GLU A 68 GLY A 76 1 9 HELIX 3 AA3 SER A 103 MET A 108 1 6 HELIX 4 AA4 SER A 113 ALA A 122 1 10 HELIX 5 AA5 GLU A 131 LYS A 140 1 10 HELIX 6 AA6 GLY A 165 PHE A 169 5 5 HELIX 7 AA7 ILE A 175 PHE A 186 1 12 HELIX 8 AA8 THR A 188 VAL A 213 1 26 HELIX 9 AA9 LYS A 218 GLY A 235 1 18 HELIX 10 AB1 GLU A 249 VAL A 253 5 5 HELIX 11 AB2 THR A 299 MET A 320 1 22 HELIX 12 AB3 TRP A 325 MET A 344 1 20 HELIX 13 AB4 SER A 350 ALA A 357 1 8 HELIX 14 AB5 LEU A 359 MET A 364 1 6 HELIX 15 AB6 GLY A 393 LEU A 397 5 5 HELIX 16 AB7 ILE A 418 ASP A 428 1 11 HELIX 17 AB8 ASP A 428 SER A 433 1 6 HELIX 18 AB9 ASN A 436 GLN A 441 1 6 HELIX 19 AC1 ARG A 442 ARG A 444 5 3 HELIX 20 AC2 THR A 471 GLY A 481 1 11 HELIX 21 AC3 LEU B 20 ASN B 37 1 18 HELIX 22 AC4 GLU B 68 GLY B 76 1 9 HELIX 23 AC5 SER B 103 MET B 108 1 6 HELIX 24 AC6 SER B 113 ALA B 122 1 10 HELIX 25 AC7 GLU B 131 LYS B 140 1 10 HELIX 26 AC8 GLY B 165 PHE B 169 5 5 HELIX 27 AC9 ILE B 175 PHE B 186 1 12 HELIX 28 AD1 THR B 188 VAL B 213 1 26 HELIX 29 AD2 LYS B 218 GLY B 235 1 18 HELIX 30 AD3 GLU B 249 VAL B 253 5 5 HELIX 31 AD4 THR B 299 MET B 320 1 22 HELIX 32 AD5 TRP B 325 MET B 344 1 20 HELIX 33 AD6 SER B 350 ALA B 357 1 8 HELIX 34 AD7 LEU B 359 MET B 364 1 6 HELIX 35 AD8 GLY B 393 LEU B 397 5 5 HELIX 36 AD9 ILE B 418 ALA B 427 1 10 HELIX 37 AE1 ASP B 428 SER B 433 1 6 HELIX 38 AE2 ASN B 436 GLN B 441 1 6 HELIX 39 AE3 ARG B 442 ARG B 444 5 3 HELIX 40 AE4 THR B 471 ALA B 480 1 10 SHEET 1 AA1 2 SER A 8 PHE A 9 0 SHEET 2 AA1 2 VAL A 18 PRO A 19 -1 O VAL A 18 N PHE A 9 SHEET 1 AA2 6 ASP A 125 TYR A 128 0 SHEET 2 AA2 6 SER A 93 VAL A 97 1 N LEU A 95 O GLN A 127 SHEET 3 AA2 6 TYR A 83 ASP A 87 -1 N TYR A 83 O PHE A 96 SHEET 4 AA2 6 ILE A 45 GLN A 49 -1 N VAL A 46 O ILE A 86 SHEET 5 AA2 6 LEU A 144 LEU A 145 1 O LEU A 145 N ILE A 45 SHEET 6 AA2 6 VAL A 171 ASN A 172 1 O ASN A 172 N LEU A 144 SHEET 1 AA3 2 THR A 54 GLN A 55 0 SHEET 2 AA3 2 GLY A 62 VAL A 63 -1 O VAL A 63 N THR A 54 SHEET 1 AA4 2 HIS A 238 SER A 239 0 SHEET 2 AA4 2 GLY A 279 GLU A 280 -1 O GLU A 280 N HIS A 238 SHEET 1 AA5 3 ILE A 244 SER A 247 0 SHEET 2 AA5 3 MET A 272 MET A 277 -1 O ASN A 276 N ILE A 244 SHEET 3 AA5 3 ILE A 288 PRO A 293 -1 O PHE A 292 N CYS A 273 SHEET 1 AA6 3 VAL A 408 VAL A 411 0 SHEET 2 AA6 3 GLU A 453 VAL A 457 -1 O VAL A 455 N LEU A 409 SHEET 3 AA6 3 ILE A 462 LEU A 464 -1 O GLU A 463 N VAL A 456 SHEET 1 AA7 2 GLY A 414 TYR A 416 0 SHEET 2 AA7 2 GLY A 448 ARG A 450 -1 O VAL A 449 N ILE A 415 SHEET 1 AA8 2 SER B 8 PHE B 9 0 SHEET 2 AA8 2 VAL B 18 PRO B 19 -1 O VAL B 18 N PHE B 9 SHEET 1 AA9 6 ASP B 125 TYR B 128 0 SHEET 2 AA9 6 SER B 93 VAL B 97 1 N LEU B 95 O ASP B 125 SHEET 3 AA9 6 TYR B 83 ASP B 87 -1 N TYR B 83 O PHE B 96 SHEET 4 AA9 6 SER B 44 GLN B 49 -1 N LEU B 48 O GLY B 84 SHEET 5 AA9 6 VAL B 143 LEU B 145 1 O LEU B 145 N ILE B 45 SHEET 6 AA9 6 VAL B 171 ASN B 172 1 O ASN B 172 N LEU B 144 SHEET 1 AB1 2 HIS B 238 SER B 239 0 SHEET 2 AB1 2 GLY B 279 GLU B 280 -1 O GLU B 280 N HIS B 238 SHEET 1 AB2 3 ILE B 244 SER B 247 0 SHEET 2 AB2 3 MET B 272 MET B 277 -1 O LEU B 274 N GLY B 246 SHEET 3 AB2 3 ILE B 288 PRO B 293 -1 O CYS B 290 N PHE B 275 SHEET 1 AB3 3 VAL B 408 VAL B 411 0 SHEET 2 AB3 3 GLU B 453 VAL B 457 -1 O VAL B 455 N LEU B 409 SHEET 3 AB3 3 ILE B 462 LEU B 464 -1 O GLU B 463 N VAL B 456 SHEET 1 AB4 2 GLY B 414 TYR B 416 0 SHEET 2 AB4 2 GLY B 448 ARG B 450 -1 O VAL B 449 N ILE B 415 SSBOND 1 CYS A 482 CYS A 482 1555 3555 2.03 LINK OE1 GLU A 227 NA NA A 508 1555 1555 2.63 LINK OD1 ASN A 276 NA NA A 500 1555 1555 2.65 LINK OD2 ASP A 287 MN MN A 499 1555 1555 2.17 LINK NE2 HIS A 370 MN MN A 499 1555 1555 2.35 LINK OE2 GLU A 412 MN MN A 499 1555 1555 2.29 LINK OE1 GLU A 412 NA NA A 500 1555 1555 2.55 LINK OE2 GLU A 452 MN MN A 499 1555 1555 2.43 LINK OE1 GLU A 452 NA NA A 500 1555 1555 2.78 LINK MN MN A 499 O GLY A 503 1555 1555 2.55 LINK NA NA A 500 O GLY A 503 1555 1555 3.10 LINK NA NA A 508 O HOH A 749 1555 1555 2.53 LINK NA NA A 508 O HOH A 857 1555 1555 3.09 LINK NA NA A 508 O HOH A1073 1555 1555 2.37 LINK NA NA A 508 O HOH A1101 1555 1555 2.32 LINK NA NA A 508 O AHOH A1114 1555 1555 3.15 LINK NA NA A 508 O BHOH A1114 1555 1555 2.25 LINK NA NA A 508 O HOH B1122 1555 1555 2.38 LINK OD1 ASN B 276 NA NA B 500 1555 1555 2.73 LINK OD2 ASP B 287 MN MN B 499 1555 1555 2.17 LINK NE2 HIS B 370 MN MN B 499 1555 1555 2.39 LINK OE2 GLU B 412 MN MN B 499 1555 1555 2.23 LINK OE1 GLU B 412 NA NA B 500 1555 1555 2.50 LINK OE2 GLU B 452 MN MN B 499 1555 1555 2.41 LINK OE1 GLU B 452 NA NA B 500 1555 1555 2.71 LINK OE2 GLU B 452 NA NA B 500 1555 1555 3.20 LINK MN MN B 499 O GLY B 503 1555 1555 2.61 LINK NA NA B 500 O GLY B 503 1555 1555 3.13 SITE 1 AC1 6 ASP A 287 HIS A 370 GLU A 412 GLU A 452 SITE 2 AC1 6 NA A 500 GLY A 503 SITE 1 AC2 7 ASN A 276 ASP A 287 GLU A 412 GLU A 452 SITE 2 AC2 7 MN A 499 GLY A 503 PRO A 504 SITE 1 AC3 8 ASN A 276 ASP A 287 HIS A 370 HIS A 377 SITE 2 AC3 8 MN A 499 NA A 500 PRO A 504 HOH A 668 SITE 1 AC4 12 LEU A 254 HIS A 255 HIS A 366 HIS A 377 SITE 2 AC4 12 ARG A 398 GLU A 412 ARG A 450 NA A 500 SITE 3 AC4 12 GLY A 503 HOH A 730 HOH A 789 TRP B 107 SITE 1 AC5 9 PHE A 9 TRP A 10 LEU A 11 LYS A 120 SITE 2 AC5 9 HOH A 607 HOH A 611 HOH A 633 HOH A 683 SITE 3 AC5 9 ASP B 264 SITE 1 AC6 5 ALA A 432 SER A 433 ARG A 437 HOH A 601 SITE 2 AC6 5 HOH A 949 SITE 1 AC7 7 TYR A 83 VAL A 129 ILE A 132 PHE A 163 SITE 2 AC7 7 ASP A 164 HOH A 932 HOH A1033 SITE 1 AC8 7 GLU A 227 HOH A 749 HOH A 857 HOH A1073 SITE 2 AC8 7 HOH A1101 HOH A1114 HOH B1122 SITE 1 AC9 6 ASP B 287 HIS B 370 GLU B 412 GLU B 452 SITE 2 AC9 6 NA B 500 GLY B 503 SITE 1 AD1 7 ASN B 276 ASP B 287 GLU B 412 GLU B 452 SITE 2 AD1 7 MN B 499 GLY B 503 PRO B 504 SITE 1 AD2 9 ASN B 276 ASP B 287 HIS B 370 HIS B 377 SITE 2 AD2 9 GLU B 412 MN B 499 NA B 500 PRO B 504 SITE 3 AD2 9 HOH B 626 SITE 1 AD3 10 HIS B 255 HIS B 366 HIS B 377 ARG B 398 SITE 2 AD3 10 GLU B 412 ARG B 450 NA B 500 GLY B 503 SITE 3 AD3 10 HOH B 796 HOH B 854 SITE 1 AD4 4 GLU B 387 ARG B 388 GOL B 508 HOH B 612 SITE 1 AD5 7 LYS B 114 GLU B 115 LYS B 118 ASP B 125 SITE 2 AD5 7 VAL B 126 GLN B 127 HOH B 792 SITE 1 AD6 8 ASP A 264 PHE B 9 TRP B 10 LYS B 120 SITE 2 AD6 8 HOH B 622 HOH B 633 HOH B 644 HOH B 735 SITE 1 AD7 6 THR B 152 ASP B 153 GLY B 155 ARG B 388 SITE 2 AD7 6 GOL B 505 HOH B 612 SITE 1 AD8 3 ARG B 29 ARG B 33 HOH B 765 SITE 1 AD9 5 ASP B 164 GLY B 165 ILE B 166 SER B 167 SITE 2 AD9 5 HOH B 650 SITE 1 AE1 7 SER B 134 THR B 137 SER B 138 GLY B 349 SITE 2 AE1 7 SER B 350 VAL B 351 ASP B 352 CRYST1 103.419 106.848 216.299 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009669 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009359 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004623 0.00000