HEADER STRUCTURAL PROTEIN 09-NOV-16 5MC7 TITLE CRYSTAL STRUCTURE OF TRUNCATED HUMAN COATOMER PROTEIN COMPLEX, SUBUNIT TITLE 2 Z1 (COPZ1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: COATOMER SUBUNIT ZETA-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-177; COMPND 5 SYNONYM: ZETA-1-COAT PROTEIN,ZETA-1 COP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: COPZ1, COPZ, CGI-120, HSPC181; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2 PLYSS KEYWDS CANCER, DORMANT CELLS, HUMAN COPI, COPZ1, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.LUNEV,M.R.GROVES REVDAT 4 17-JAN-24 5MC7 1 REMARK REVDAT 3 30-MAR-22 5MC7 1 REMARK REVDAT 2 18-JAN-17 5MC7 1 JRNL REVDAT 1 28-DEC-16 5MC7 0 JRNL AUTH S.LUNEV,M.F.SEMMELINK,J.L.XIAN,K.Y.MA,A.J.LEENDERS, JRNL AUTH 2 A.S.DOMLING,M.SHTUTMAN,M.R.GROVES JRNL TITL CRYSTAL STRUCTURE OF TRUNCATED HUMAN COATOMER PROTEIN JRNL TITL 2 COMPLEX SUBUNIT ZETA 1 (COP ZETA 1). JRNL REF ACTA CRYSTALLOGR F STRUCT V. 73 1 2017 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 28045387 JRNL DOI 10.1107/S2053230X16018896 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 31877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1619 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2310 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2224 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.48000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.234 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2256 ; 0.030 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2204 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3044 ; 2.569 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5066 ; 1.284 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 276 ; 6.150 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;34.673 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 422 ;15.804 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.910 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 354 ; 0.187 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2524 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 496 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1110 ; 0.923 ; 0.951 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1109 ; 0.913 ; 0.950 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1384 ; 1.376 ; 1.423 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1385 ; 1.377 ; 1.424 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1146 ; 1.573 ; 1.157 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1147 ; 1.573 ; 1.158 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1661 ; 2.366 ; 1.655 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9461 ; 3.529 ;18.765 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 9397 ; 3.511 ;18.608 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 12 150 B 12 150 8444 0.15 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0219 0.2729 13.5597 REMARK 3 T TENSOR REMARK 3 T11: 0.0278 T22: 0.0290 REMARK 3 T33: 0.0066 T12: -0.0049 REMARK 3 T13: -0.0027 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.4905 L22: 2.0257 REMARK 3 L33: 2.7389 L12: 0.2236 REMARK 3 L13: 0.3692 L23: 0.0608 REMARK 3 S TENSOR REMARK 3 S11: -0.0191 S12: 0.0251 S13: 0.0648 REMARK 3 S21: 0.0281 S22: 0.0111 S23: 0.0475 REMARK 3 S31: -0.0629 S32: 0.0582 S33: 0.0079 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 60 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4591 -25.0179 -4.3407 REMARK 3 T TENSOR REMARK 3 T11: 0.0667 T22: 0.0702 REMARK 3 T33: 0.0244 T12: 0.0080 REMARK 3 T13: 0.0055 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 3.6387 L22: 3.3418 REMARK 3 L33: 2.2423 L12: -0.4915 REMARK 3 L13: -0.0307 L23: -0.0017 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: 0.1246 S13: 0.1826 REMARK 3 S21: -0.1538 S22: -0.0597 S23: -0.0526 REMARK 3 S31: -0.0647 S32: -0.0202 S33: 0.0659 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 61 B 150 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5089 -32.6323 3.4194 REMARK 3 T TENSOR REMARK 3 T11: 0.0410 T22: 0.0550 REMARK 3 T33: 0.0315 T12: 0.0093 REMARK 3 T13: -0.0161 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.9760 L22: 2.7652 REMARK 3 L33: 2.2269 L12: 0.5035 REMARK 3 L13: -0.2492 L23: -0.4524 REMARK 3 S TENSOR REMARK 3 S11: -0.0305 S12: -0.0325 S13: -0.1139 REMARK 3 S21: 0.0430 S22: -0.0107 S23: 0.0256 REMARK 3 S31: 0.0982 S32: -0.0556 S33: 0.0412 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MC7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002262. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : LN2 COOLED DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR AND TWO HORIZONTAL REMARK 200 DEFLECTING AND ONE VERTICAL REMARK 200 DEFLECTING X-RAY MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33495 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 56.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.025 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2HF6 REMARK 200 REMARK 200 REMARK: THIN PLATES OF RECTANGULAR SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M DL-MALIC ACID 0.2 M NA MALONATE, REMARK 280 PH 6.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.68000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.70150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.68000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.70150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 4 REMARK 465 ALA A 5 REMARK 465 MET A 6 REMARK 465 GLU A 7 REMARK 465 PRO A 8 REMARK 465 SER A 9 REMARK 465 LEU A 10 REMARK 465 TYR A 11 REMARK 465 GLY B 4 REMARK 465 ALA B 5 REMARK 465 MET B 6 REMARK 465 GLU B 7 REMARK 465 PRO B 8 REMARK 465 SER B 9 REMARK 465 LEU B 10 REMARK 465 TYR B 11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 98 CG PHE A 98 CD1 -0.117 REMARK 500 GLU B 40 CD GLU B 40 OE2 -0.087 REMARK 500 TYR B 84 CG TYR B 84 CD1 0.088 REMARK 500 SER B 102 CB SER B 102 OG -0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 32 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 PHE A 44 CB - CG - CD2 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 106 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU A 123 CB - CG - CD1 ANGL. DEV. = 15.2 DEGREES REMARK 500 ASP A 126 CB - CG - OD1 ANGL. DEV. = 10.2 DEGREES REMARK 500 ASP A 126 CB - CG - OD2 ANGL. DEV. = -10.1 DEGREES REMARK 500 ASP A 138 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG A 149 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 LEU B 19 CB - CG - CD2 ANGL. DEV. = -11.9 DEGREES REMARK 500 ASP B 20 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 LEU B 26 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 LEU B 26 CB - CG - CD2 ANGL. DEV. = 16.3 DEGREES REMARK 500 ASP B 32 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG B 112 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 LEU B 114 CB - CG - CD1 ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG B 145 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG B 149 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 149 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 57 121.00 173.17 REMARK 500 SER A 72 -162.11 -111.74 REMARK 500 ASP A 74 15.68 -140.65 REMARK 500 ILE B 73 -102.55 56.57 REMARK 500 REMARK 500 REMARK: NULL DBREF 5MC7 A 7 150 UNP P61923 COPZ1_HUMAN 7 150 DBREF 5MC7 B 7 150 UNP P61923 COPZ1_HUMAN 7 150 SEQADV 5MC7 GLY A 4 UNP P61923 EXPRESSION TAG SEQADV 5MC7 ALA A 5 UNP P61923 EXPRESSION TAG SEQADV 5MC7 MET A 6 UNP P61923 EXPRESSION TAG SEQADV 5MC7 GLY B 4 UNP P61923 EXPRESSION TAG SEQADV 5MC7 ALA B 5 UNP P61923 EXPRESSION TAG SEQADV 5MC7 MET B 6 UNP P61923 EXPRESSION TAG SEQRES 1 A 147 GLY ALA MET GLU PRO SER LEU TYR THR VAL LYS ALA ILE SEQRES 2 A 147 LEU ILE LEU ASP ASN ASP GLY ASP ARG LEU PHE ALA LYS SEQRES 3 A 147 TYR TYR ASP ASP THR TYR PRO SER VAL LYS GLU GLN LYS SEQRES 4 A 147 ALA PHE GLU LYS ASN ILE PHE ASN LYS THR HIS ARG THR SEQRES 5 A 147 ASP SER GLU ILE ALA LEU LEU GLU GLY LEU THR VAL VAL SEQRES 6 A 147 TYR LYS SER SER ILE ASP LEU TYR PHE TYR VAL ILE GLY SEQRES 7 A 147 SER SER TYR GLU ASN GLU LEU MET LEU MET ALA VAL LEU SEQRES 8 A 147 ASN CYS LEU PHE ASP SER LEU SER GLN MET LEU ARG LYS SEQRES 9 A 147 ASN VAL GLU LYS ARG ALA LEU LEU GLU ASN MET GLU GLY SEQRES 10 A 147 LEU PHE LEU ALA VAL ASP GLU ILE VAL ASP GLY GLY VAL SEQRES 11 A 147 ILE LEU GLU SER ASP PRO GLN GLN VAL VAL HIS ARG VAL SEQRES 12 A 147 ALA LEU ARG GLY SEQRES 1 B 147 GLY ALA MET GLU PRO SER LEU TYR THR VAL LYS ALA ILE SEQRES 2 B 147 LEU ILE LEU ASP ASN ASP GLY ASP ARG LEU PHE ALA LYS SEQRES 3 B 147 TYR TYR ASP ASP THR TYR PRO SER VAL LYS GLU GLN LYS SEQRES 4 B 147 ALA PHE GLU LYS ASN ILE PHE ASN LYS THR HIS ARG THR SEQRES 5 B 147 ASP SER GLU ILE ALA LEU LEU GLU GLY LEU THR VAL VAL SEQRES 6 B 147 TYR LYS SER SER ILE ASP LEU TYR PHE TYR VAL ILE GLY SEQRES 7 B 147 SER SER TYR GLU ASN GLU LEU MET LEU MET ALA VAL LEU SEQRES 8 B 147 ASN CYS LEU PHE ASP SER LEU SER GLN MET LEU ARG LYS SEQRES 9 B 147 ASN VAL GLU LYS ARG ALA LEU LEU GLU ASN MET GLU GLY SEQRES 10 B 147 LEU PHE LEU ALA VAL ASP GLU ILE VAL ASP GLY GLY VAL SEQRES 11 B 147 ILE LEU GLU SER ASP PRO GLN GLN VAL VAL HIS ARG VAL SEQRES 12 B 147 ALA LEU ARG GLY FORMUL 3 HOH *116(H2 O) HELIX 1 AA1 SER A 37 LYS A 51 1 15 HELIX 2 AA2 ASN A 86 LEU A 105 1 20 HELIX 3 AA3 GLU A 110 GLU A 116 1 7 HELIX 4 AA4 ASN A 117 ILE A 128 1 12 HELIX 5 AA5 ASP A 138 GLY A 150 1 13 HELIX 6 AA6 SER B 37 HIS B 53 1 17 HELIX 7 AA7 ASN B 86 LEU B 105 1 20 HELIX 8 AA8 GLU B 110 GLU B 116 1 7 HELIX 9 AA9 ASN B 117 ILE B 128 1 12 HELIX 10 AB1 ASP B 138 GLY B 150 1 13 SHEET 1 AA1 5 ARG A 25 TYR A 30 0 SHEET 2 AA1 5 ALA A 15 ASP A 20 -1 N ILE A 18 O LEU A 26 SHEET 3 AA1 5 LEU A 75 SER A 82 -1 O TYR A 78 N LEU A 17 SHEET 4 AA1 5 LEU A 65 SER A 71 -1 N LYS A 70 O PHE A 77 SHEET 5 AA1 5 GLU A 58 LEU A 62 -1 N ALA A 60 O VAL A 67 SHEET 1 AA2 2 VAL A 129 ASP A 130 0 SHEET 2 AA2 2 VAL A 133 ILE A 134 -1 O VAL A 133 N ASP A 130 SHEET 1 AA3 5 ARG B 25 TYR B 30 0 SHEET 2 AA3 5 ALA B 15 ASP B 20 -1 N ILE B 18 O PHE B 27 SHEET 3 AA3 5 LEU B 75 SER B 82 -1 O TYR B 76 N LEU B 19 SHEET 4 AA3 5 LEU B 65 SER B 72 -1 N LYS B 70 O PHE B 77 SHEET 5 AA3 5 ILE B 59 LEU B 62 -1 N ALA B 60 O VAL B 67 SHEET 1 AA4 2 VAL B 129 ASP B 130 0 SHEET 2 AA4 2 VAL B 133 ILE B 134 -1 O VAL B 133 N ASP B 130 CRYST1 109.360 65.403 37.273 90.00 96.58 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009144 0.000000 0.001055 0.00000 SCALE2 0.000000 0.015290 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027007 0.00000