HEADER RNA BINDING PROTEIN 11-NOV-16 5MDI TITLE CRYSTAL STRUCTURE OF TDP-43 N-TERMINAL DOMAIN AT 2.1 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAR DNA-BINDING PROTEIN 43; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TARDBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA BINDING PROTEINS, DYNAMIC POLYMERIZATION, ALS, PROTEIN KEYWDS 2 AGGREGATION, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.AFROZ,E.-M.HOCK,P.ERNST,C.FOGLIENI,M.JAMBEAU,L.GILHESPY, AUTHOR 2 F.LAFERRIERE,Z.MANIECKA,A.PLUECKTHUN,P.MITTL,P.PAGANETTI, AUTHOR 3 F.H.T.ALLAIN,M.POLYMENIDOU REVDAT 2 12-JUL-17 5MDI 1 REVDAT 1 05-JUL-17 5MDI 0 JRNL AUTH T.AFROZ,E.M.HOCK,P.ERNST,C.FOGLIENI,M.JAMBEAU, JRNL AUTH 2 L.A.B.GILHESPY,F.LAFERRIERE,Z.MANIECKA,A.PLUCKTHUN,P.MITTL, JRNL AUTH 3 P.PAGANETTI,F.H.T.ALLAIN,M.POLYMENIDOU JRNL TITL FUNCTIONAL AND DYNAMIC POLYMERIZATION OF THE ALS-LINKED JRNL TITL 2 PROTEIN TDP-43 ANTAGONIZES ITS PATHOLOGIC AGGREGATION. JRNL REF NAT COMMUN V. 8 45 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28663553 JRNL DOI 10.1038/S41467-017-00062-0 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 12500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 658 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 939 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1232 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : -0.38000 REMARK 3 B33 (A**2) : 1.23000 REMARK 3 B12 (A**2) : -0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.809 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1261 ; 0.031 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1147 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1727 ; 2.722 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2656 ; 1.246 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 155 ; 7.259 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 60 ;35.226 ;24.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 187 ;15.359 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.387 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 193 ; 0.175 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1405 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 241 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 627 ; 2.611 ; 2.951 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 625 ; 2.579 ; 2.940 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 779 ; 3.773 ; 4.381 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 780 ; 3.772 ; 4.385 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 634 ; 3.294 ; 3.261 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 635 ; 3.296 ; 3.267 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 949 ; 4.647 ; 4.779 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1433 ; 7.952 ;36.711 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1420 ; 7.893 ;36.276 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 79 REMARK 3 ORIGIN FOR THE GROUP (A): -5.3330 -34.4255 5.5794 REMARK 3 T TENSOR REMARK 3 T11: 0.0616 T22: 0.0137 REMARK 3 T33: 0.0732 T12: 0.0136 REMARK 3 T13: 0.0460 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 6.9618 L22: 5.0475 REMARK 3 L33: 2.6683 L12: -1.7705 REMARK 3 L13: -1.1465 L23: 0.8541 REMARK 3 S TENSOR REMARK 3 S11: 0.0735 S12: -0.1363 S13: 0.2655 REMARK 3 S21: -0.0674 S22: -0.0189 S23: -0.0431 REMARK 3 S31: -0.2975 S32: -0.1392 S33: -0.0546 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 79 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8187 -33.0568 -6.6646 REMARK 3 T TENSOR REMARK 3 T11: 0.0762 T22: 0.0539 REMARK 3 T33: 0.1331 T12: -0.0127 REMARK 3 T13: 0.0897 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 5.8147 L22: 5.6227 REMARK 3 L33: 5.6621 L12: 0.0761 REMARK 3 L13: -2.4064 L23: -1.0564 REMARK 3 S TENSOR REMARK 3 S11: 0.1382 S12: 0.2500 S13: 0.1765 REMARK 3 S21: 0.0942 S22: -0.0493 S23: 0.0439 REMARK 3 S31: 0.0862 S32: 0.1542 S33: -0.0889 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32038 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.15800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : 4.95000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE PH 6.5, 1.4 M REMARK 280 SODIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.57650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.57650 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.57650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 LEU A -8 REMARK 465 VAL A -7 REMARK 465 PRO A -6 REMARK 465 ARG A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 HIS A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 SER A 1 REMARK 465 ASP A 80 REMARK 465 MET B -21 REMARK 465 GLY B -20 REMARK 465 SER B -19 REMARK 465 SER B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 SER B -11 REMARK 465 SER B -10 REMARK 465 GLY B -9 REMARK 465 LEU B -8 REMARK 465 VAL B -7 REMARK 465 PRO B -6 REMARK 465 ARG B -5 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 HIS B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 ASP B 80 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 3 CG GLU A 3 CD 0.095 REMARK 500 GLU A 3 CD GLU A 3 OE1 0.102 REMARK 500 TYR B 43 CB TYR B 43 CG -0.107 REMARK 500 ARG B 52 CZ ARG B 52 NH2 -0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 6 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 23 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 44 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 55 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 44 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 55 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 66 0.27 -58.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 246 DISTANCE = 7.38 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 101 DBREF 5MDI A 2 80 UNP K7EJM5 K7EJM5_HUMAN 2 80 DBREF 5MDI B 2 80 UNP K7EJM5 K7EJM5_HUMAN 2 80 SEQADV 5MDI MET A -21 UNP K7EJM5 INITIATING METHIONINE SEQADV 5MDI GLY A -20 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI SER A -19 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI SER A -18 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI HIS A -17 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI HIS A -16 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI HIS A -15 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI HIS A -14 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI HIS A -13 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI HIS A -12 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI SER A -11 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI SER A -10 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI GLY A -9 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI LEU A -8 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI VAL A -7 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI PRO A -6 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI ARG A -5 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI GLY A -4 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI SER A -3 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI HIS A -2 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI MET A -1 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI ALA A 0 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI SER A 1 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI MET B -21 UNP K7EJM5 INITIATING METHIONINE SEQADV 5MDI GLY B -20 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI SER B -19 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI SER B -18 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI HIS B -17 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI HIS B -16 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI HIS B -15 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI HIS B -14 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI HIS B -13 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI HIS B -12 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI SER B -11 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI SER B -10 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI GLY B -9 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI LEU B -8 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI VAL B -7 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI PRO B -6 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI ARG B -5 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI GLY B -4 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI SER B -3 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI HIS B -2 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI MET B -1 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI ALA B 0 UNP K7EJM5 EXPRESSION TAG SEQADV 5MDI SER B 1 UNP K7EJM5 EXPRESSION TAG SEQRES 1 A 102 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 102 LEU VAL PRO ARG GLY SER HIS MET ALA SER SER GLU TYR SEQRES 3 A 102 ILE ARG VAL THR GLU ASP GLU ASN ASP GLU PRO ILE GLU SEQRES 4 A 102 ILE PRO SER GLU ASP ASP GLY THR VAL LEU LEU SER THR SEQRES 5 A 102 VAL THR ALA GLN PHE PRO GLY ALA CAF GLY LEU ARG TYR SEQRES 6 A 102 ARG ASN PRO VAL SER GLN CAF MET ARG GLY VAL ARG LEU SEQRES 7 A 102 VAL GLU GLY ILE LEU HIS ALA PRO ASP ALA GLY TRP GLY SEQRES 8 A 102 ASN LEU VAL TYR VAL VAL ASN TYR PRO LYS ASP SEQRES 1 B 102 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 102 LEU VAL PRO ARG GLY SER HIS MET ALA SER SER GLU TYR SEQRES 3 B 102 ILE ARG VAL THR GLU ASP GLU ASN ASP GLU PRO ILE GLU SEQRES 4 B 102 ILE PRO SER GLU ASP ASP GLY THR VAL LEU LEU SER THR SEQRES 5 B 102 VAL THR ALA GLN PHE PRO GLY ALA CAF GLY LEU ARG TYR SEQRES 6 B 102 ARG ASN PRO VAL SER GLN CAF MET ARG GLY VAL ARG LEU SEQRES 7 B 102 VAL GLU GLY ILE LEU HIS ALA PRO ASP ALA GLY TRP GLY SEQRES 8 B 102 ASN LEU VAL TYR VAL VAL ASN TYR PRO LYS ASP MODRES 5MDI CAF A 39 CYS MODIFIED RESIDUE MODRES 5MDI CAF A 50 CYS MODIFIED RESIDUE MODRES 5MDI CAF B 39 CYS MODIFIED RESIDUE MODRES 5MDI CAF B 50 CYS MODIFIED RESIDUE HET CAF A 39 20 HET CAF A 50 20 HET CAF B 39 20 HET CAF B 50 20 HET ACT B 101 7 HETNAM CAF S-DIMETHYLARSINOYL-CYSTEINE HETNAM ACT ACETATE ION HETSYN CAF CYSTEIN-S-YL CACODYLATE FORMUL 1 CAF 4(C5 H12 AS N O3 S) FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 HOH *108(H2 O) HELIX 1 AA1 LEU A 28 ALA A 33 1 6 HELIX 2 AA2 LEU B 28 ALA B 33 1 6 SHEET 1 AA1 5 ILE A 16 PRO A 19 0 SHEET 2 AA1 5 TYR A 4 THR A 8 -1 N VAL A 7 O ILE A 16 SHEET 3 AA1 5 VAL A 72 ASN A 76 1 O TYR A 73 N ARG A 6 SHEET 4 AA1 5 GLY A 40 ARG A 44 -1 N GLY A 40 O ASN A 76 SHEET 5 AA1 5 MET A 51 GLY A 53 -1 O ARG A 52 N TYR A 43 SHEET 1 AA2 3 VAL A 26 LEU A 27 0 SHEET 2 AA2 3 ILE A 60 HIS A 62 -1 O LEU A 61 N VAL A 26 SHEET 3 AA2 3 ARG A 55 VAL A 57 -1 N ARG A 55 O HIS A 62 SHEET 1 AA3 5 ILE B 16 PRO B 19 0 SHEET 2 AA3 5 TYR B 4 THR B 8 -1 N VAL B 7 O ILE B 16 SHEET 3 AA3 5 VAL B 72 ASN B 76 1 O TYR B 73 N ARG B 6 SHEET 4 AA3 5 GLY B 40 ARG B 44 -1 N ARG B 42 O VAL B 74 SHEET 5 AA3 5 MET B 51 GLY B 53 -1 O ARG B 52 N TYR B 43 SHEET 1 AA4 3 VAL B 26 LEU B 27 0 SHEET 2 AA4 3 ILE B 60 HIS B 62 -1 O LEU B 61 N VAL B 26 SHEET 3 AA4 3 ARG B 55 VAL B 57 -1 N ARG B 55 O HIS B 62 LINK C ALA A 38 N CAF A 39 1555 1555 1.36 LINK C CAF A 39 N GLY A 40 1555 1555 1.33 LINK C GLN A 49 N CAF A 50 1555 1555 1.32 LINK C CAF A 50 N MET A 51 1555 1555 1.36 LINK C ALA B 38 N CAF B 39 1555 1555 1.37 LINK C CAF B 39 N GLY B 40 1555 1555 1.30 LINK C GLN B 49 N CAF B 50 1555 1555 1.34 LINK C CAF B 50 N MET B 51 1555 1555 1.31 SITE 1 AC1 2 ALA B 66 GLY B 69 CRYST1 89.518 89.518 49.153 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011171 0.006450 0.000000 0.00000 SCALE2 0.000000 0.012899 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020345 0.00000