HEADER TRANSLATION 14-NOV-16 5ME6 TITLE CRYSTAL STRUCTURE OF EIF4E FROM C. MELO BOUND TO A CAP ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSCRIPTION INITIATION FACTOR 4E; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: EUKARYOTIC TRANSLATION INITIATION FACTOR 4E; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CUCUMIS MELO; SOURCE 3 ORGANISM_COMMON: MUSKMELON; SOURCE 4 ORGANISM_TAXID: 3656; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EIF4E, CAP ANALOG, C. MELO, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR J.QUEROL-AUDI,C.SILVA,M.MIRAS,M.ARANDA-REGULES,N.VERDAGUER REVDAT 1 23-AUG-17 5ME6 0 JRNL AUTH M.MIRAS,V.TRUNIGER,C.SILVA,N.VERDAGUER,M.A.ARANDA, JRNL AUTH 2 J.QUEROL-AUDI JRNL TITL STRUCTURE OF EIF4E IN COMPLEX WITH AN EIF4G PEPTIDE SUPPORTS JRNL TITL 2 A UNIVERSAL BIPARTITE BINDING MODE FOR PROTEIN TRANSLATION. JRNL REF PLANT PHYSIOL. V. 174 1476 2017 JRNL REFN ESSN 1532-2548 JRNL PMID 28522457 JRNL DOI 10.1104/PP.17.00193 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 16831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 869 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1179 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5653 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.19000 REMARK 3 B22 (A**2) : 2.16000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.453 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.365 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 43.013 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.867 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5900 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5282 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8018 ; 1.976 ; 1.911 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12164 ; 1.061 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 688 ; 7.722 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 296 ;37.211 ;24.324 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 922 ;16.941 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;20.825 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 797 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6706 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1501 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2776 ; 0.704 ; 1.706 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2775 ; 0.704 ; 1.706 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3456 ; 1.233 ; 2.556 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 1000 REMARK 3 ORIGIN FOR THE GROUP (A): -14.7656 2.8455 -16.8726 REMARK 3 T TENSOR REMARK 3 T11: 0.0617 T22: 0.1188 REMARK 3 T33: 0.4316 T12: 0.0021 REMARK 3 T13: -0.0675 T23: -0.0858 REMARK 3 L TENSOR REMARK 3 L11: 2.6680 L22: 2.1296 REMARK 3 L33: 3.7061 L12: -0.5406 REMARK 3 L13: -1.5814 L23: 1.3811 REMARK 3 S TENSOR REMARK 3 S11: 0.1101 S12: 0.3070 S13: -0.0666 REMARK 3 S21: -0.1716 S22: -0.1440 S23: 0.1765 REMARK 3 S31: 0.0634 S32: -0.5867 S33: 0.0339 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 53 B 235 REMARK 3 ORIGIN FOR THE GROUP (A): -41.7978 23.3508 -15.0363 REMARK 3 T TENSOR REMARK 3 T11: 0.0088 T22: 0.1132 REMARK 3 T33: 0.3544 T12: 0.0197 REMARK 3 T13: 0.0208 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 2.5125 L22: 4.2891 REMARK 3 L33: 1.9438 L12: 0.4662 REMARK 3 L13: 0.5094 L23: -0.3884 REMARK 3 S TENSOR REMARK 3 S11: -0.0149 S12: 0.2866 S13: -0.1188 REMARK 3 S21: -0.1214 S22: -0.0429 S23: -0.1427 REMARK 3 S31: 0.0513 S32: 0.2251 S33: 0.0578 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 54 C 235 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6102 40.8450 -20.4162 REMARK 3 T TENSOR REMARK 3 T11: 0.0708 T22: 0.1113 REMARK 3 T33: 0.4876 T12: 0.0486 REMARK 3 T13: -0.0018 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 2.0376 L22: 2.8124 REMARK 3 L33: 4.1499 L12: 0.2639 REMARK 3 L13: 0.0744 L23: 0.4582 REMARK 3 S TENSOR REMARK 3 S11: -0.0699 S12: -0.0714 S13: 0.0066 REMARK 3 S21: 0.1130 S22: 0.0714 S23: 0.2552 REMARK 3 S31: -0.1643 S32: -0.3982 S33: -0.0015 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 55 D 1000 REMARK 3 ORIGIN FOR THE GROUP (A): -20.0921 16.8163 -53.6708 REMARK 3 T TENSOR REMARK 3 T11: 0.8490 T22: 0.2611 REMARK 3 T33: 0.6540 T12: 0.0012 REMARK 3 T13: 0.0171 T23: -0.1164 REMARK 3 L TENSOR REMARK 3 L11: 2.6412 L22: 3.5058 REMARK 3 L33: 4.4910 L12: -1.1981 REMARK 3 L13: 0.7134 L23: -0.5545 REMARK 3 S TENSOR REMARK 3 S11: -0.2583 S12: -0.4535 S13: 0.3800 REMARK 3 S21: 0.9113 S22: 0.1247 S23: 0.0009 REMARK 3 S31: -0.4900 S32: -0.1443 S33: 0.1336 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5ME6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002183. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24722 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.564 REMARK 200 RESOLUTION RANGE LOW (A) : 81.475 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.24400 REMARK 200 FOR THE DATA SET : 4.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.88100 REMARK 200 R SYM FOR SHELL (I) : 0.88100 REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM POTASSIUM TARTRATE, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.84950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.41950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.43400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.41950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.84950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.43400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 50 REMARK 465 SER A 74 REMARK 465 ALA A 75 REMARK 465 LYS A 76 REMARK 465 SER A 77 REMARK 465 LYS A 78 REMARK 465 GLN A 79 REMARK 465 ALA A 80 REMARK 465 THR A 81 REMARK 465 TRP A 82 REMARK 465 GLY A 83 REMARK 465 SER B 50 REMARK 465 ASN B 51 REMARK 465 ALA B 52 REMARK 465 ALA B 75 REMARK 465 LYS B 76 REMARK 465 SER B 77 REMARK 465 LYS B 78 REMARK 465 GLN B 79 REMARK 465 ALA B 80 REMARK 465 THR B 81 REMARK 465 TRP B 82 REMARK 465 GLY B 83 REMARK 465 ALA B 84 REMARK 465 SER C 50 REMARK 465 ASN C 51 REMARK 465 ALA C 52 REMARK 465 ALA C 53 REMARK 465 PHE C 225 REMARK 465 ASP C 226 REMARK 465 ARG C 227 REMARK 465 SER D 50 REMARK 465 ASN D 51 REMARK 465 ALA D 52 REMARK 465 ALA D 53 REMARK 465 SER D 54 REMARK 465 SER D 74 REMARK 465 ALA D 75 REMARK 465 LYS D 76 REMARK 465 SER D 77 REMARK 465 LYS D 78 REMARK 465 GLN D 79 REMARK 465 ALA D 80 REMARK 465 THR D 81 REMARK 465 TRP D 82 REMARK 465 GLY D 83 REMARK 465 ALA D 84 REMARK 465 SER D 85 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 72 CG OD1 ND2 REMARK 470 PRO A 73 CG CD REMARK 470 SER B 74 OG REMARK 470 SER B 85 OG REMARK 470 LYS C 224 CG CD CE NZ REMARK 470 HIS C 228 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 230 CG CD CE NZ REMARK 470 LEU D 55 CG CD1 CD2 REMARK 470 VAL D 56 CG1 CG2 REMARK 470 HIS D 57 CG ND1 CD2 CE1 NE2 REMARK 470 GLN D 58 CG CD OE1 NE2 REMARK 470 PRO D 59 CG CD REMARK 470 LYS D 123 CG CD CE NZ REMARK 470 VAL D 235 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 154 CG TYR A 154 CD2 0.090 REMARK 500 TYR A 154 CE1 TYR A 154 CZ 0.169 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 73 N - CA - CB ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG A 145 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 114 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 227 CA - CB - CG ANGL. DEV. = 17.9 DEGREES REMARK 500 ARG C 145 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 PRO D 59 N - CA - CB ANGL. DEV. = 8.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 166 51.83 -100.78 REMARK 500 ASP A 226 -111.54 14.53 REMARK 500 LEU B 55 -36.33 -38.78 REMARK 500 PRO B 73 2.94 -45.78 REMARK 500 LYS B 123 -5.26 78.67 REMARK 500 CYS B 166 43.86 -105.24 REMARK 500 ASP B 226 -97.02 1.08 REMARK 500 LYS C 76 49.58 -36.52 REMARK 500 SER C 77 158.22 -42.70 REMARK 500 GLN C 79 113.30 -33.64 REMARK 500 TRP C 82 113.88 -34.98 REMARK 500 ALA C 84 24.91 -143.15 REMARK 500 ASN C 190 75.36 -112.19 REMARK 500 HIS D 57 74.64 33.35 REMARK 500 CYS D 166 49.16 -104.37 REMARK 500 ASP D 226 -104.50 10.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 71 ASN B 72 -141.11 REMARK 500 PRO B 73 SER B 74 149.85 REMARK 500 LYS C 76 SER C 77 -147.11 REMARK 500 ASP D 71 ASN D 72 -140.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M7G A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M7G D 1000 DBREF 5ME6 A 53 235 UNP Q00LS8 Q00LS8_CUCME 53 235 DBREF 5ME6 B 53 235 UNP Q00LS8 Q00LS8_CUCME 53 235 DBREF 5ME6 C 53 235 UNP Q00LS8 Q00LS8_CUCME 53 235 DBREF 5ME6 D 53 235 UNP Q00LS8 Q00LS8_CUCME 53 235 SEQADV 5ME6 SER A 50 UNP Q00LS8 EXPRESSION TAG SEQADV 5ME6 ASN A 51 UNP Q00LS8 EXPRESSION TAG SEQADV 5ME6 ALA A 52 UNP Q00LS8 EXPRESSION TAG SEQADV 5ME6 SER B 50 UNP Q00LS8 EXPRESSION TAG SEQADV 5ME6 ASN B 51 UNP Q00LS8 EXPRESSION TAG SEQADV 5ME6 ALA B 52 UNP Q00LS8 EXPRESSION TAG SEQADV 5ME6 SER C 50 UNP Q00LS8 EXPRESSION TAG SEQADV 5ME6 ASN C 51 UNP Q00LS8 EXPRESSION TAG SEQADV 5ME6 ALA C 52 UNP Q00LS8 EXPRESSION TAG SEQADV 5ME6 SER D 50 UNP Q00LS8 EXPRESSION TAG SEQADV 5ME6 ASN D 51 UNP Q00LS8 EXPRESSION TAG SEQADV 5ME6 ALA D 52 UNP Q00LS8 EXPRESSION TAG SEQRES 1 A 186 SER ASN ALA ALA SER LEU VAL HIS GLN PRO HIS PRO LEU SEQRES 2 A 186 GLU HIS SER TRP THR PHE TRP PHE ASP ASN PRO SER ALA SEQRES 3 A 186 LYS SER LYS GLN ALA THR TRP GLY ALA SER ILE ARG PRO SEQRES 4 A 186 ILE TYR THR PHE SER THR VAL GLU GLU PHE TRP SER VAL SEQRES 5 A 186 TYR ASN ASN ILE HIS HIS PRO SER LYS LEU ALA MET ARG SEQRES 6 A 186 ALA ASP LEU TYR CYS PHE LYS HIS LYS ILE GLU PRO LYS SEQRES 7 A 186 TRP GLU ASP PRO VAL CYS ALA ASN GLY GLY LYS TRP THR SEQRES 8 A 186 VAL ASN PHE PRO ARG GLY LYS SER ASP ASN GLY TRP LEU SEQRES 9 A 186 TYR THR LEU LEU ALA MET ILE GLY GLU GLN PHE ASP CYS SEQRES 10 A 186 GLY ASP GLU ILE CYS GLY ALA VAL VAL ASN VAL ARG SER SEQRES 11 A 186 GLY GLN ASP LYS ILE SER ILE TRP THR LYS ASN ALA SER SEQRES 12 A 186 ASN GLU ALA ALA GLN ALA SER ILE GLY LYS GLN TRP LYS SEQRES 13 A 186 GLU PHE LEU ASP TYR ASN GLU SER ILE GLY PHE ILE PHE SEQRES 14 A 186 HIS ASP ASP ALA LYS LYS PHE ASP ARG HIS ALA LYS ASN SEQRES 15 A 186 LYS TYR MET VAL SEQRES 1 B 186 SER ASN ALA ALA SER LEU VAL HIS GLN PRO HIS PRO LEU SEQRES 2 B 186 GLU HIS SER TRP THR PHE TRP PHE ASP ASN PRO SER ALA SEQRES 3 B 186 LYS SER LYS GLN ALA THR TRP GLY ALA SER ILE ARG PRO SEQRES 4 B 186 ILE TYR THR PHE SER THR VAL GLU GLU PHE TRP SER VAL SEQRES 5 B 186 TYR ASN ASN ILE HIS HIS PRO SER LYS LEU ALA MET ARG SEQRES 6 B 186 ALA ASP LEU TYR CYS PHE LYS HIS LYS ILE GLU PRO LYS SEQRES 7 B 186 TRP GLU ASP PRO VAL CYS ALA ASN GLY GLY LYS TRP THR SEQRES 8 B 186 VAL ASN PHE PRO ARG GLY LYS SER ASP ASN GLY TRP LEU SEQRES 9 B 186 TYR THR LEU LEU ALA MET ILE GLY GLU GLN PHE ASP CYS SEQRES 10 B 186 GLY ASP GLU ILE CYS GLY ALA VAL VAL ASN VAL ARG SER SEQRES 11 B 186 GLY GLN ASP LYS ILE SER ILE TRP THR LYS ASN ALA SER SEQRES 12 B 186 ASN GLU ALA ALA GLN ALA SER ILE GLY LYS GLN TRP LYS SEQRES 13 B 186 GLU PHE LEU ASP TYR ASN GLU SER ILE GLY PHE ILE PHE SEQRES 14 B 186 HIS ASP ASP ALA LYS LYS PHE ASP ARG HIS ALA LYS ASN SEQRES 15 B 186 LYS TYR MET VAL SEQRES 1 C 186 SER ASN ALA ALA SER LEU VAL HIS GLN PRO HIS PRO LEU SEQRES 2 C 186 GLU HIS SER TRP THR PHE TRP PHE ASP ASN PRO SER ALA SEQRES 3 C 186 LYS SER LYS GLN ALA THR TRP GLY ALA SER ILE ARG PRO SEQRES 4 C 186 ILE TYR THR PHE SER THR VAL GLU GLU PHE TRP SER VAL SEQRES 5 C 186 TYR ASN ASN ILE HIS HIS PRO SER LYS LEU ALA MET ARG SEQRES 6 C 186 ALA ASP LEU TYR CYS PHE LYS HIS LYS ILE GLU PRO LYS SEQRES 7 C 186 TRP GLU ASP PRO VAL CYS ALA ASN GLY GLY LYS TRP THR SEQRES 8 C 186 VAL ASN PHE PRO ARG GLY LYS SER ASP ASN GLY TRP LEU SEQRES 9 C 186 TYR THR LEU LEU ALA MET ILE GLY GLU GLN PHE ASP CYS SEQRES 10 C 186 GLY ASP GLU ILE CYS GLY ALA VAL VAL ASN VAL ARG SER SEQRES 11 C 186 GLY GLN ASP LYS ILE SER ILE TRP THR LYS ASN ALA SER SEQRES 12 C 186 ASN GLU ALA ALA GLN ALA SER ILE GLY LYS GLN TRP LYS SEQRES 13 C 186 GLU PHE LEU ASP TYR ASN GLU SER ILE GLY PHE ILE PHE SEQRES 14 C 186 HIS ASP ASP ALA LYS LYS PHE ASP ARG HIS ALA LYS ASN SEQRES 15 C 186 LYS TYR MET VAL SEQRES 1 D 186 SER ASN ALA ALA SER LEU VAL HIS GLN PRO HIS PRO LEU SEQRES 2 D 186 GLU HIS SER TRP THR PHE TRP PHE ASP ASN PRO SER ALA SEQRES 3 D 186 LYS SER LYS GLN ALA THR TRP GLY ALA SER ILE ARG PRO SEQRES 4 D 186 ILE TYR THR PHE SER THR VAL GLU GLU PHE TRP SER VAL SEQRES 5 D 186 TYR ASN ASN ILE HIS HIS PRO SER LYS LEU ALA MET ARG SEQRES 6 D 186 ALA ASP LEU TYR CYS PHE LYS HIS LYS ILE GLU PRO LYS SEQRES 7 D 186 TRP GLU ASP PRO VAL CYS ALA ASN GLY GLY LYS TRP THR SEQRES 8 D 186 VAL ASN PHE PRO ARG GLY LYS SER ASP ASN GLY TRP LEU SEQRES 9 D 186 TYR THR LEU LEU ALA MET ILE GLY GLU GLN PHE ASP CYS SEQRES 10 D 186 GLY ASP GLU ILE CYS GLY ALA VAL VAL ASN VAL ARG SER SEQRES 11 D 186 GLY GLN ASP LYS ILE SER ILE TRP THR LYS ASN ALA SER SEQRES 12 D 186 ASN GLU ALA ALA GLN ALA SER ILE GLY LYS GLN TRP LYS SEQRES 13 D 186 GLU PHE LEU ASP TYR ASN GLU SER ILE GLY PHE ILE PHE SEQRES 14 D 186 HIS ASP ASP ALA LYS LYS PHE ASP ARG HIS ALA LYS ASN SEQRES 15 D 186 LYS TYR MET VAL HET M7G A1000 29 HET M7G D1000 29 HETNAM M7G 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE FORMUL 5 M7G 2(C11 H19 N5 O11 P2) HELIX 1 AA1 ALA A 52 HIS A 57 1 6 HELIX 2 AA2 VAL A 95 ASN A 103 1 9 HELIX 3 AA3 HIS A 107 LEU A 111 5 5 HELIX 4 AA4 SER A 148 GLY A 161 1 14 HELIX 5 AA5 CYS A 166 ASP A 168 5 3 HELIX 6 AA6 ASN A 193 ASP A 209 1 17 HELIX 7 AA7 HIS A 219 ASP A 226 1 8 HELIX 8 AA8 ARG A 227 ALA A 229 5 3 HELIX 9 AA9 ALA B 53 HIS B 57 5 5 HELIX 10 AB1 VAL B 95 ASN B 103 1 9 HELIX 11 AB2 HIS B 107 LEU B 111 5 5 HELIX 12 AB3 SER B 148 GLY B 161 1 14 HELIX 13 AB4 CYS B 166 ASP B 168 5 3 HELIX 14 AB5 ASN B 193 ASP B 209 1 17 HELIX 15 AB6 HIS B 219 ASP B 226 1 8 HELIX 16 AB7 ARG B 227 ALA B 229 5 3 HELIX 17 AB8 VAL C 95 ASN C 103 1 9 HELIX 18 AB9 HIS C 107 LEU C 111 5 5 HELIX 19 AC1 SER C 148 GLY C 161 1 14 HELIX 20 AC2 CYS C 166 ASP C 168 5 3 HELIX 21 AC3 ASN C 193 ASP C 209 1 17 HELIX 22 AC4 HIS C 219 LYS C 224 1 6 HELIX 23 AC5 VAL D 95 ASN D 103 1 9 HELIX 24 AC6 HIS D 107 LEU D 111 5 5 HELIX 25 AC7 SER D 148 GLY D 161 1 14 HELIX 26 AC8 CYS D 166 ASP D 168 5 3 HELIX 27 AC9 ASN D 193 ASP D 209 1 17 HELIX 28 AD1 HIS D 219 ASP D 226 1 8 HELIX 29 AD2 ARG D 227 ALA D 229 5 3 SHEET 1 AA1 8 ARG A 87 THR A 94 0 SHEET 2 AA1 8 PRO A 61 ASP A 71 -1 N PHE A 70 O ARG A 87 SHEET 3 AA1 8 ASP A 116 LYS A 121 -1 O PHE A 120 N THR A 67 SHEET 4 AA1 8 ILE A 170 VAL A 177 -1 O ALA A 173 N CYS A 119 SHEET 5 AA1 8 GLN A 181 THR A 188 -1 O LYS A 183 N ASN A 176 SHEET 6 AA1 8 GLY A 137 PRO A 144 -1 N PHE A 143 O ASP A 182 SHEET 7 AA1 8 ILE A 214 PHE A 218 -1 O GLY A 215 N THR A 140 SHEET 8 AA1 8 TYR A 233 VAL A 235 -1 O VAL A 235 N ILE A 214 SHEET 1 AA2 8 ARG B 87 THR B 94 0 SHEET 2 AA2 8 PRO B 61 ASP B 71 -1 N PHE B 70 O ARG B 87 SHEET 3 AA2 8 ASP B 116 LYS B 121 -1 O PHE B 120 N THR B 67 SHEET 4 AA2 8 ILE B 170 VAL B 177 -1 O ALA B 173 N CYS B 119 SHEET 5 AA2 8 GLN B 181 THR B 188 -1 O TRP B 187 N CYS B 171 SHEET 6 AA2 8 GLY B 137 PRO B 144 -1 N PHE B 143 O ASP B 182 SHEET 7 AA2 8 ILE B 214 PHE B 218 -1 O ILE B 217 N LYS B 138 SHEET 8 AA2 8 TYR B 233 VAL B 235 -1 O VAL B 235 N ILE B 214 SHEET 1 AA3 8 ARG C 87 THR C 94 0 SHEET 2 AA3 8 PRO C 61 ASP C 71 -1 N PHE C 68 O TYR C 90 SHEET 3 AA3 8 ASP C 116 LYS C 121 -1 O TYR C 118 N TRP C 69 SHEET 4 AA3 8 ILE C 170 VAL C 177 -1 O ALA C 173 N CYS C 119 SHEET 5 AA3 8 GLN C 181 THR C 188 -1 O LYS C 183 N ASN C 176 SHEET 6 AA3 8 GLY C 137 PRO C 144 -1 N PHE C 143 O ASP C 182 SHEET 7 AA3 8 ILE C 214 PHE C 218 -1 O GLY C 215 N THR C 140 SHEET 8 AA3 8 TYR C 233 VAL C 235 -1 O VAL C 235 N ILE C 214 SHEET 1 AA4 8 ARG D 87 THR D 94 0 SHEET 2 AA4 8 PRO D 61 ASP D 71 -1 N PHE D 68 O TYR D 90 SHEET 3 AA4 8 ASP D 116 LYS D 121 -1 O TYR D 118 N TRP D 69 SHEET 4 AA4 8 ILE D 170 VAL D 177 -1 O ALA D 173 N CYS D 119 SHEET 5 AA4 8 GLN D 181 THR D 188 -1 O LYS D 183 N ASN D 176 SHEET 6 AA4 8 GLY D 137 PRO D 144 -1 N VAL D 141 O ILE D 184 SHEET 7 AA4 8 GLY D 215 PHE D 218 -1 O ILE D 217 N LYS D 138 SHEET 8 AA4 8 TYR D 233 MET D 234 -1 O TYR D 233 N PHE D 216 SITE 1 AC1 5 PRO A 126 GLU A 129 ARG A 178 TRP A 187 SITE 2 AC1 5 ASP A 226 SITE 1 AC2 6 TYR D 118 PRO D 126 TRP D 128 GLU D 129 SITE 2 AC2 6 ARG D 178 LYS D 202 CRYST1 57.699 108.868 122.839 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017331 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009185 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008141 0.00000