data_5MF9 # _entry.id 5MF9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5MF9 WWPDB D_1200002334 BMRB 34067 # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution structure of the RBM5 OCRE domain in complex with polyproline SmN peptide.' _pdbx_database_related.db_id 34067 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5MF9 _pdbx_database_status.recvd_initial_deposition_date 2016-11-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mourao, A.' 1 ? 'Sattler, M.' 2 ? 'Bonnal, S.' 3 ? 'Komal, S.' 4 ? 'Warner, L.' 5 ? 'Bordonne, R.' 6 ? 'Valcarcel, J.' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Elife _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2050-084X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 5 _citation.language ? _citation.page_first 1 _citation.page_last 25 _citation.title 'Structural basis for the recognition ofspliceosomal SmN B B proteins by theRBM5 OCRE domain in splicing regulation' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.7554/eLife.14707 _citation.pdbx_database_id_PubMed 27894420 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Mourao, A.' 1 primary 'Bonnal, S.' 2 primary 'Komal, S.' 3 primary 'Warner, L.' 4 primary 'Bordonne, R.' 5 primary 'Valcarcel, J.' 6 primary 'Sattler, M.' 7 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA-binding protein 5' 7436.785 1 ? ? 'UNP residues 451-511' ? 2 polymer man 'Survival motor neuron protein' 1136.371 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Protein G15,Putative tumor suppressor LUCA15,RNA-binding motif protein 5,Renal carcinoma antigen NY-REN-9' 2 'Component of gems 1,Gemin-1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GAMGTKYAVPDTSTYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETYVPAAES GAMGTKYAVPDTSTYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETYVPAAES A ? 2 'polypeptide(L)' no no GMRPPPPGIRG GMRPPPPGIRG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 GLY n 1 5 THR n 1 6 LYS n 1 7 TYR n 1 8 ALA n 1 9 VAL n 1 10 PRO n 1 11 ASP n 1 12 THR n 1 13 SER n 1 14 THR n 1 15 TYR n 1 16 GLN n 1 17 TYR n 1 18 ASP n 1 19 GLU n 1 20 SER n 1 21 SER n 1 22 GLY n 1 23 TYR n 1 24 TYR n 1 25 TYR n 1 26 ASP n 1 27 PRO n 1 28 THR n 1 29 THR n 1 30 GLY n 1 31 LEU n 1 32 TYR n 1 33 TYR n 1 34 ASP n 1 35 PRO n 1 36 ASN n 1 37 SER n 1 38 GLN n 1 39 TYR n 1 40 TYR n 1 41 TYR n 1 42 ASN n 1 43 SER n 1 44 LEU n 1 45 THR n 1 46 GLN n 1 47 GLN n 1 48 TYR n 1 49 LEU n 1 50 TYR n 1 51 TRP n 1 52 ASP n 1 53 GLY n 1 54 GLU n 1 55 LYS n 1 56 GLU n 1 57 THR n 1 58 TYR n 1 59 VAL n 1 60 PRO n 1 61 ALA n 1 62 ALA n 1 63 GLU n 1 64 SER n 2 1 GLY n 2 2 MET n 2 3 ARG n 2 4 PRO n 2 5 PRO n 2 6 PRO n 2 7 PRO n 2 8 GLY n 2 9 ILE n 2 10 ARG n 2 11 GLY n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 64 Human ? 'RBM5, H37, LUCA15' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 11 Human ? 'SMN1, SMN, SMNT, SMN2, SMNC' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP RBM5_HUMAN P52756 ? 1 GTKYAVPDTSTYQYDESSGYYYDPTTGLYYDPNSQYYYNSLTQQYLYWDGEKETYVPAAES 451 2 UNP SMN_HUMAN Q16637 ? 2 GPPPPPPPPPP 216 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5MF9 A 4 ? 64 ? P52756 451 ? 511 ? 4 64 2 2 5MF9 B 1 ? 11 ? Q16637 216 ? 226 ? 100 110 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5MF9 GLY A 1 ? UNP P52756 ? ? 'expression tag' 1 1 1 5MF9 ALA A 2 ? UNP P52756 ? ? 'expression tag' 2 2 1 5MF9 MET A 3 ? UNP P52756 ? ? 'expression tag' 3 3 2 5MF9 MET B 2 ? UNP Q16637 PRO 217 conflict 101 4 2 5MF9 ARG B 3 ? UNP Q16637 PRO 218 conflict 102 5 2 5MF9 GLY B 8 ? UNP Q16637 PRO 223 conflict 107 6 2 5MF9 ILE B 9 ? UNP Q16637 PRO 224 conflict 108 7 2 5MF9 ARG B 10 ? UNP Q16637 PRO 225 conflict 109 8 2 5MF9 GLY B 11 ? UNP Q16637 PRO 226 conflict 110 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '3D 1H-13C NOESY aliphatic' 3 isotropic 2 1 1 '3D 1H-13C HSQC aromatic' 3 isotropic 3 1 1 '2D 1H-15N HSQC' 1 isotropic 4 1 1 '2D 1H-1H NOESY' 3 isotropic 5 1 1 '3D HNCA' 2 isotropic 6 1 1 '3D CBCA(CO)NH' 2 isotropic 7 1 1 '3D HNCACB' 2 isotropic 8 1 1 '3D HNCO' 2 isotropic 9 1 1 '3D HCCH-TOCSY' 2 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units bar _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 50 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 15N_sample _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2 mM [U-99% 15N] 15N, 2 mM [U-99% 13C; U-99% 15N] 13C_15N, 2 mM [U-13C; U-15N] unlabel, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label OCRE_SmN _pdbx_nmr_sample_details.type solid _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 DRX ? Bruker 500 ? 2 DRX ? Bruker 600 cryoprobe 3 DRX ? Bruker 900 cryoprobe # _pdbx_nmr_refine.entry_id 5MF9 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 5MF9 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5MF9 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement ARIA 1.2 ;Linge, O'Donoghue and Nilges ; 2 'structure calculation' CNS ? 'Brunger, Adams, Clore, Gros, Nilges and Read' 4 'peak picking' NMRView ? 'Johnson, One Moon Scientific' 5 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 6 'chemical shift assignment' NMRView ? 'Johnson, One Moon Scientific' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5MF9 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5MF9 _struct.title 'Solution structure of the RBM5 OCRE domain in complex with polyproline SmN peptide.' _struct.pdbx_descriptor 'RNA-binding protein 5, Survival motor neuron protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5MF9 _struct_keywords.text 'OCRE, Poly proline binding domain, SmN, alternative splicing, splicing' _struct_keywords.pdbx_keywords SPLICING # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 16 ? ASP A 18 ? GLN A 16 ASP A 18 AA1 2 TYR A 23 ? ASP A 26 ? TYR A 23 ASP A 26 AA1 3 LEU A 31 ? TYR A 33 ? LEU A 31 TYR A 33 AA1 4 TYR A 40 ? ASN A 42 ? TYR A 40 ASN A 42 AA1 5 GLN A 47 ? TRP A 51 ? GLN A 47 TRP A 51 AA1 6 TYR A 58 ? PRO A 60 ? TYR A 58 PRO A 60 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLN A 16 ? N GLN A 16 O TYR A 25 ? O TYR A 25 AA1 2 3 N ASP A 26 ? N ASP A 26 O LEU A 31 ? O LEU A 31 AA1 3 4 N TYR A 32 ? N TYR A 32 O TYR A 41 ? O TYR A 41 AA1 4 5 N ASN A 42 ? N ASN A 42 O GLN A 47 ? O GLN A 47 AA1 5 6 N TYR A 50 ? N TYR A 50 O VAL A 59 ? O VAL A 59 # _atom_sites.entry_id 5MF9 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 MET 3 3 3 MET MET A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 TRP 51 51 51 TRP TRP A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 SER 64 64 64 SER SER A . n B 2 1 GLY 1 100 100 GLY GLY B . n B 2 2 MET 2 101 101 MET MET B . n B 2 3 ARG 3 102 102 ARG ARG B . n B 2 4 PRO 4 103 103 PRO PRO B . n B 2 5 PRO 5 104 104 PRO PRO B . n B 2 6 PRO 6 105 105 PRO PRO B . n B 2 7 PRO 7 106 106 PRO PRO B . n B 2 8 GLY 8 107 107 GLY GLY B . n B 2 9 ILE 9 108 108 ILE ILE B . n B 2 10 ARG 10 109 109 ARG ARG B . n B 2 11 GLY 11 110 110 GLY GLY B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1000 ? 1 MORE -5 ? 1 'SSA (A^2)' 5340 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-12-07 2 'Structure model' 1 1 2017-09-06 3 'Structure model' 1 2 2018-01-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 3 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 15N 2 ? mM '[U-99% 15N]' 1 13C_15N 2 ? mM '[U-99% 13C; U-99% 15N]' 1 unlabel 2 ? mM '[U-13C; U-15N]' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HD2 A TYR 32 ? ? HA B PRO 105 ? ? 1.18 2 1 HZ2 A LYS 6 ? ? OE1 A GLU 56 ? ? 1.59 3 2 HD2 A TYR 32 ? ? HA B PRO 105 ? ? 1.12 4 2 HD2 A TYR 23 ? ? HB2 B PRO 105 ? ? 1.26 5 2 HH A TYR 41 ? ? HB2 B ARG 102 ? ? 1.35 6 3 HD2 A TYR 32 ? ? HA B PRO 105 ? ? 1.14 7 3 HB2 A TYR 41 ? ? HA A TYR 48 ? ? 1.23 8 4 HD2 A TYR 32 ? ? HA B PRO 105 ? ? 1.09 9 4 HE2 A TYR 23 ? ? H B ILE 108 ? ? 1.30 10 4 OD2 A ASP 11 ? ? HG A SER 13 ? ? 1.56 11 4 OD2 A ASP 26 ? ? HG1 A THR 29 ? ? 1.59 12 5 HH A TYR 41 ? ? HB2 B ARG 102 ? ? 1.10 13 5 HD2 A TYR 32 ? ? HA B PRO 105 ? ? 1.10 14 5 HB2 A TYR 41 ? ? HA A TYR 48 ? ? 1.25 15 5 HD2 A TYR 23 ? ? HB2 B PRO 105 ? ? 1.31 16 5 OD2 A ASP 11 ? ? HG A SER 13 ? ? 1.57 17 6 HH A TYR 39 ? ? H B GLY 107 ? ? 1.14 18 6 HH A TYR 39 ? ? HA B PRO 106 ? ? 1.17 19 6 HD2 A TYR 32 ? ? HA B PRO 105 ? ? 1.22 20 6 HE2 A TYR 23 ? ? H B ILE 108 ? ? 1.31 21 6 HH A TYR 41 ? ? HB2 B ARG 102 ? ? 1.31 22 6 HB2 A TYR 41 ? ? HA A TYR 48 ? ? 1.35 23 7 HH A TYR 39 ? ? H B GLY 107 ? ? 0.68 24 7 HH A TYR 41 ? ? HB2 B ARG 102 ? ? 1.24 25 7 HD2 A TYR 23 ? ? HB2 B PRO 105 ? ? 1.27 26 7 HD2 A TYR 32 ? ? HA B PRO 105 ? ? 1.34 27 8 HD2 A TYR 32 ? ? HA B PRO 105 ? ? 1.07 28 8 HH A TYR 48 ? ? HD2 B PRO 104 ? ? 1.08 29 8 HH A TYR 39 ? ? H B GLY 107 ? ? 1.16 30 8 HH A TYR 39 ? ? HA B PRO 106 ? ? 1.17 31 8 HD2 A TYR 23 ? ? HB2 B PRO 105 ? ? 1.25 32 8 OD1 A ASP 18 ? ? HG A SER 20 ? ? 1.55 33 9 HH A TYR 48 ? ? HD2 B PRO 104 ? ? 1.11 34 9 HH A TYR 41 ? ? HB2 B ARG 102 ? ? 1.12 35 9 HD2 A TYR 32 ? ? HA B PRO 105 ? ? 1.23 36 9 HD2 A TYR 23 ? ? HB2 B PRO 105 ? ? 1.31 37 10 HD2 A TYR 32 ? ? HA B PRO 105 ? ? 1.23 38 10 HD2 A TYR 23 ? ? HB2 B PRO 105 ? ? 1.27 39 10 HH A TYR 41 ? ? HB2 B ARG 102 ? ? 1.30 40 10 HE2 A TYR 23 ? ? H B ILE 108 ? ? 1.32 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 2 CE1 A TYR 41 ? ? CZ A TYR 41 ? ? 1.473 1.381 0.092 0.013 N 2 2 CZ A TYR 41 ? ? CE2 A TYR 41 ? ? 1.290 1.381 -0.091 0.013 N 3 3 CE1 A TYR 32 ? ? CZ A TYR 32 ? ? 1.492 1.381 0.111 0.013 N 4 3 CZ A TYR 32 ? ? CE2 A TYR 32 ? ? 1.259 1.381 -0.122 0.013 N 5 6 CE1 A TYR 32 ? ? CZ A TYR 32 ? ? 1.505 1.381 0.124 0.013 N 6 6 CZ A TYR 32 ? ? CE2 A TYR 32 ? ? 1.253 1.381 -0.128 0.013 N 7 7 CE1 A TYR 32 ? ? CZ A TYR 32 ? ? 1.529 1.381 0.148 0.013 N 8 7 CZ A TYR 32 ? ? CE2 A TYR 32 ? ? 1.230 1.381 -0.151 0.013 N 9 7 CE1 A TYR 48 ? ? CZ A TYR 48 ? ? 1.215 1.381 -0.166 0.013 N 10 7 CZ A TYR 48 ? ? CE2 A TYR 48 ? ? 1.536 1.381 0.155 0.013 N 11 8 CE1 A TYR 48 ? ? CZ A TYR 48 ? ? 1.189 1.381 -0.192 0.013 N 12 8 CZ A TYR 48 ? ? CE2 A TYR 48 ? ? 1.564 1.381 0.183 0.013 N 13 9 CE1 A TYR 48 ? ? CZ A TYR 48 ? ? 1.190 1.381 -0.191 0.013 N 14 9 CZ A TYR 48 ? ? CE2 A TYR 48 ? ? 1.560 1.381 0.179 0.013 N 15 10 CE1 A TYR 32 ? ? CZ A TYR 32 ? ? 1.511 1.381 0.130 0.013 N 16 10 CZ A TYR 32 ? ? CE2 A TYR 32 ? ? 1.245 1.381 -0.136 0.013 N 17 10 CE1 A TYR 41 ? ? CZ A TYR 41 ? ? 1.497 1.381 0.116 0.013 N 18 10 CZ A TYR 41 ? ? CE2 A TYR 41 ? ? 1.264 1.381 -0.117 0.013 N 19 10 CE1 A TYR 50 ? ? CZ A TYR 50 ? ? 1.285 1.381 -0.096 0.013 N 20 10 CZ A TYR 50 ? ? CE2 A TYR 50 ? ? 1.480 1.381 0.099 0.013 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 2 ? ? -150.39 -45.66 2 1 ALA A 8 ? ? -150.37 -159.81 3 1 ALA A 61 ? ? -87.94 33.70 4 1 ALA A 62 ? ? -92.55 58.13 5 1 MET B 101 ? ? -162.18 -152.25 6 1 ARG B 102 ? ? -55.10 170.90 7 1 ILE B 108 ? ? 32.99 53.70 8 2 TYR A 7 ? ? -134.10 -78.13 9 2 ALA A 8 ? ? 48.51 -144.77 10 2 MET B 101 ? ? -128.36 -158.56 11 2 ILE B 108 ? ? 35.20 52.38 12 3 MET A 3 ? ? -66.86 91.42 13 3 TYR A 7 ? ? -158.49 28.64 14 3 ALA A 8 ? ? -133.94 -127.28 15 3 ALA A 62 ? ? -153.87 68.40 16 3 ILE B 108 ? ? 38.25 43.45 17 4 LYS A 6 ? ? -86.51 33.63 18 4 TYR A 7 ? ? -156.31 19.71 19 4 ALA A 8 ? ? -119.49 -108.80 20 4 ALA A 61 ? ? -83.03 45.46 21 4 ILE B 108 ? ? 31.09 55.74 22 5 ALA A 2 ? ? 62.47 90.79 23 5 LYS A 6 ? ? -87.01 -70.80 24 5 TYR A 7 ? ? -141.84 -85.46 25 5 ALA A 8 ? ? 50.05 -112.21 26 5 ALA A 61 ? ? -88.78 43.53 27 5 ALA A 62 ? ? -98.10 48.99 28 5 ILE B 108 ? ? 35.32 48.16 29 6 ILE B 108 ? ? 36.67 43.91 30 7 ALA A 8 ? ? -147.77 -90.43 31 7 GLN A 38 ? ? 72.13 -5.48 32 7 ILE B 108 ? ? 35.50 51.47 33 8 ALA A 2 ? ? -154.55 -79.53 34 8 LYS A 6 ? ? -85.28 32.46 35 8 ALA A 8 ? ? -121.29 -85.54 36 8 ALA A 62 ? ? -176.17 -33.05 37 8 ILE B 108 ? ? 31.36 50.84 38 9 THR A 5 ? ? -65.18 99.63 39 9 TYR A 7 ? ? -151.93 -71.84 40 9 ALA A 8 ? ? 62.68 -174.06 41 9 ALA A 62 ? ? -136.58 -30.89 42 9 MET B 101 ? ? -177.78 -59.41 43 9 ILE B 108 ? ? 35.88 46.14 44 10 THR A 5 ? ? 61.13 74.38 45 10 ALA A 8 ? ? 52.48 -145.54 46 10 GLN A 38 ? ? 73.32 -21.54 47 10 MET B 101 ? ? -78.66 -156.56 48 10 ILE B 108 ? ? 29.15 51.64 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 2 TYR A 41 ? ? 0.083 'SIDE CHAIN' 2 4 TYR A 39 ? ? 0.094 'SIDE CHAIN' 3 5 TYR A 39 ? ? 0.090 'SIDE CHAIN' 4 6 TYR A 15 ? ? 0.052 'SIDE CHAIN' 5 6 TYR A 39 ? ? 0.084 'SIDE CHAIN' 6 7 TYR A 39 ? ? 0.078 'SIDE CHAIN' 7 8 TYR A 39 ? ? 0.097 'SIDE CHAIN' 8 9 TYR A 39 ? ? 0.098 'SIDE CHAIN' 9 10 TYR A 41 ? ? 0.073 'SIDE CHAIN' # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'German Research Foundation' Germany SFB1035 1 'German Research Foundation' Germany GRK1721 2 'Banco de Santander' Spain 'Consolider RNAREG, MICINN, AGAUR' 3 'Spanish Ministry of Economy and Competitiveness' Spain 'Centro de Excelencia Severo Ochoa 2013-2017, SEV-2012-0208' 4 #