HEADER DE NOVO PROTEIN 18-NOV-16 5MFC
TITLE DESIGNED ARMADILLO REPEAT PROTEIN YIIIM5AII IN COMPLEX WITH (KR)4-GFP
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: YIIIM5AII;
COMPND 3 CHAIN: A, C;
COMPND 4 ENGINEERED: YES;
COMPND 5 MOL_ID: 2;
COMPND 6 MOLECULE: (KR)4-GREEN FLUORESCENT PROTEIN,GREEN FLUORESCENT PROTEIN;
COMPND 7 CHAIN: B, D;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;
SOURCE 3 ORGANISM_TAXID: 32630;
SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12;
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333;
SOURCE 6 MOL_ID: 2;
SOURCE 7 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA;
SOURCE 8 ORGANISM_COMMON: JELLYFISH;
SOURCE 9 ORGANISM_TAXID: 6100;
SOURCE 10 GENE: GFP;
SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12;
SOURCE 12 EXPRESSION_SYSTEM_TAXID: 83333
KEYWDS DESIGNED ARMADILLO REPEAT PROTEIN, PEPTIDE BINDING, DE NOVO PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR S.HANSEN,J.KIEFER,C.MADHURANTAKAM,P.MITTL,A.PLUECKTHUN
REVDAT 4 06-NOV-24 5MFC 1 REMARK
REVDAT 3 17-JAN-24 5MFC 1 REMARK
REVDAT 2 04-OCT-17 5MFC 1 JRNL
REVDAT 1 19-JUL-17 5MFC 0
JRNL AUTH S.HANSEN,J.D.KIEFER,C.MADHURANTAKAM,P.R.E.MITTL,A.PLUCKTHUN
JRNL TITL STRUCTURES OF DESIGNED ARMADILLO REPEAT PROTEINS BINDING TO
JRNL TITL 2 PEPTIDES FUSED TO GLOBULAR DOMAINS.
JRNL REF PROTEIN SCI. V. 26 1942 2017
JRNL REFN ESSN 1469-896X
JRNL PMID 28691351
JRNL DOI 10.1002/PRO.3229
REMARK 2
REMARK 2 RESOLUTION. 2.40 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.2
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.56
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9
REMARK 3 NUMBER OF REFLECTIONS : 47802
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.219
REMARK 3 R VALUE (WORKING SET) : 0.218
REMARK 3 FREE R VALUE : 0.240
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950
REMARK 3 FREE R VALUE TEST SET COUNT : 2364
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.46
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.16
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3482
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1950
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3315
REMARK 3 BIN R VALUE (WORKING SET) : 0.1930
REMARK 3 BIN FREE R VALUE : 0.2250
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 167
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 8037
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 4
REMARK 3 SOLVENT ATOMS : 78
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 72.39
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 99.22
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 10.09040
REMARK 3 B22 (A**2) : 2.76780
REMARK 3 B33 (A**2) : -12.85810
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.410
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.368
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.233
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.386
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.239
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 8257 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 11194 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 2910 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 286 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 1153 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 8211 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 1072 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 9339 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.25
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.73
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 22.79
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 18.8117 16.8561 -42.7403
REMARK 3 T TENSOR
REMARK 3 T11: -0.3674 T22: -0.3328
REMARK 3 T33: -0.3052 T12: 0.0355
REMARK 3 T13: 0.0009 T23: -0.2737
REMARK 3 L TENSOR
REMARK 3 L11: 3.9730 L22: 2.2645
REMARK 3 L33: 1.9668 L12: -0.3741
REMARK 3 L13: -1.2779 L23: -0.8606
REMARK 3 S TENSOR
REMARK 3 S11: -0.0991 S12: 0.2349 S13: -0.9310
REMARK 3 S21: 0.1393 S22: -0.1329 S23: 0.3455
REMARK 3 S31: -0.0883 S32: -0.1319 S33: 0.2320
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 50.8784 16.9911 -43.5735
REMARK 3 T TENSOR
REMARK 3 T11: -0.0489 T22: 0.0129
REMARK 3 T33: -0.5129 T12: -0.0561
REMARK 3 T13: -0.0930 T23: 0.0168
REMARK 3 L TENSOR
REMARK 3 L11: 4.3598 L22: 2.5441
REMARK 3 L33: 1.1039 L12: -0.7035
REMARK 3 L13: 0.1003 L23: -0.0265
REMARK 3 S TENSOR
REMARK 3 S11: 0.0320 S12: -0.1125 S13: 0.0565
REMARK 3 S21: 0.2301 S22: -0.1834 S23: -0.2780
REMARK 3 S31: -0.1049 S32: 0.1429 S33: 0.1514
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { C|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 6.7000 36.4760 -25.0242
REMARK 3 T TENSOR
REMARK 3 T11: 0.1139 T22: -0.4555
REMARK 3 T33: -0.5792 T12: 0.0982
REMARK 3 T13: 0.1786 T23: -0.1476
REMARK 3 L TENSOR
REMARK 3 L11: 3.3179 L22: 3.3583
REMARK 3 L33: 4.2170 L12: -0.4986
REMARK 3 L13: 2.2993 L23: 1.0388
REMARK 3 S TENSOR
REMARK 3 S11: -0.2108 S12: -0.0255 S13: 0.2372
REMARK 3 S21: 1.1177 S22: 0.0998 S23: 0.3574
REMARK 3 S31: 0.3182 S32: 0.0287 S33: 0.1110
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: { D|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 12.6203 64.9615 -17.2901
REMARK 3 T TENSOR
REMARK 3 T11: 0.6860 T22: -0.2084
REMARK 3 T33: -0.7647 T12: 0.0476
REMARK 3 T13: -0.0178 T23: -0.0877
REMARK 3 L TENSOR
REMARK 3 L11: 2.5023 L22: 7.7253
REMARK 3 L33: 2.6617 L12: -0.4340
REMARK 3 L13: 1.6624 L23: 0.6440
REMARK 3 S TENSOR
REMARK 3 S11: -0.4744 S12: 0.0295 S13: 0.3001
REMARK 3 S21: 1.6408 S22: 0.2792 S23: -0.1113
REMARK 3 S31: -0.1937 S32: 0.3232 S33: 0.1952
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5MFC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-NOV-16.
REMARK 100 THE DEPOSITION ID IS D_1200002386.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 14-DEC-12
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 4.6
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X06DA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47804
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400
REMARK 200 RESOLUTION RANGE LOW (A) : 40.560
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9
REMARK 200 DATA REDUNDANCY : 12.40
REMARK 200 R MERGE (I) : 0.12800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.1700
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46
REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2
REMARK 200 DATA REDUNDANCY IN SHELL : 12.80
REMARK 200 R MERGE FOR SHELL (I) : 4.59000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.580
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 5AEI, 1GFL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 53.93
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 8% W/V PEG 4000, 0.1M NA ACETATE
REMARK 280 TRIHYDRATE PH 4.6,, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE
REMARK 280 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -X,Y,-Z+1/2
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 122.66500
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 122.66500
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.55500
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.12000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.55500
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.12000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 122.66500
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.55500
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.12000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 122.66500
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.55500
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.12000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 3700 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 22200 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 3620 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 21310 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 HIS A 293
REMARK 465 GLY B 982
REMARK 465 PRO B 983
REMARK 465 GLY B 984
REMARK 465 SER B 985
REMARK 465 GLY B 986
REMARK 465 SER B 987
REMARK 465 PRO B 988
REMARK 465 GLY B 1232
REMARK 465 MET B 1233
REMARK 465 ASP B 1234
REMARK 465 GLU B 1235
REMARK 465 LEU B 1236
REMARK 465 TYR B 1237
REMARK 465 LYS B 1238
REMARK 465 GLY C 8
REMARK 465 PRO C 9
REMARK 465 SER C 292
REMARK 465 HIS C 293
REMARK 465 GLY D 982
REMARK 465 PRO D 983
REMARK 465 GLY D 984
REMARK 465 SER D 985
REMARK 465 GLY D 986
REMARK 465 SER D 987
REMARK 465 PRO D 988
REMARK 465 LYS D 989
REMARK 465 THR D 1230
REMARK 465 HIS D 1231
REMARK 465 GLY D 1232
REMARK 465 MET D 1233
REMARK 465 ASP D 1234
REMARK 465 GLU D 1235
REMARK 465 LEU D 1236
REMARK 465 TYR D 1237
REMARK 465 LYS D 1238
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 SER A 11 23.14 -141.23
REMARK 500 ASN A 21 40.31 -108.59
REMARK 500 SER A 190 141.20 -38.23
REMARK 500 SER A 231 40.27 -106.68
REMARK 500 ASP B1021 97.75 -161.20
REMARK 500 SER C 11 22.44 -140.95
REMARK 500 SER C 190 136.16 -36.65
REMARK 500 LEU C 271 21.02 -71.57
REMARK 500 ASP D1021 97.57 -162.89
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 319 DISTANCE = 6.05 ANGSTROMS
REMARK 525 HOH C 308 DISTANCE = 7.44 ANGSTROMS
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 1301
DBREF 5MFC A 8 293 PDB 5MFC 5MFC 8 293
DBREF 5MFC B 982 1002 PDB 5MFC 5MFC 982 1002
DBREF1 5MFC B 1003 1238 UNP A0A059PIQ0_AEQVI
DBREF2 5MFC B A0A059PIQ0 3 238
DBREF 5MFC C 8 293 PDB 5MFC 5MFC 8 293
DBREF 5MFC D 982 1002 PDB 5MFC 5MFC 982 1002
DBREF1 5MFC D 1003 1238 UNP A0A059PIQ0_AEQVI
DBREF2 5MFC D A0A059PIQ0 3 238
SEQADV 5MFC ARG B 1030 UNP A0A059PIQ SER 30 CONFLICT
SEQADV 5MFC CRO B 1066 UNP A0A059PIQ THR 65 CHROMOPHORE
SEQADV 5MFC CRO B 1066 UNP A0A059PIQ TYR 66 CHROMOPHORE
SEQADV 5MFC CRO B 1066 UNP A0A059PIQ GLY 67 CHROMOPHORE
SEQADV 5MFC SER B 1072 UNP A0A059PIQ ALA 72 CONFLICT
SEQADV 5MFC ARG B 1080 UNP A0A059PIQ GLN 80 CONFLICT
SEQADV 5MFC VAL B 1206 UNP A0A059PIQ ALA 206 CONFLICT
SEQADV 5MFC ARG D 1030 UNP A0A059PIQ SER 30 CONFLICT
SEQADV 5MFC CRO D 1066 UNP A0A059PIQ THR 65 CHROMOPHORE
SEQADV 5MFC CRO D 1066 UNP A0A059PIQ TYR 66 CHROMOPHORE
SEQADV 5MFC CRO D 1066 UNP A0A059PIQ GLY 67 CHROMOPHORE
SEQADV 5MFC SER D 1072 UNP A0A059PIQ ALA 72 CONFLICT
SEQADV 5MFC ARG D 1080 UNP A0A059PIQ GLN 80 CONFLICT
SEQADV 5MFC VAL D 1206 UNP A0A059PIQ ALA 206 CONFLICT
SEQRES 1 A 286 GLY PRO GLY SER GLU LEU PRO GLN MET VAL GLN GLN LEU
SEQRES 2 A 286 ASN SER PRO ASP GLN GLN GLU LEU GLN SER ALA LEU ARG
SEQRES 3 A 286 LYS LEU SER GLN ILE ALA SER GLY GLY ASN GLU GLN ILE
SEQRES 4 A 286 GLN ALA VAL ILE ASP ALA GLY ALA LEU PRO ALA LEU VAL
SEQRES 5 A 286 GLN LEU LEU SER SER PRO ASN GLU GLN ILE LEU GLN GLU
SEQRES 6 A 286 ALA LEU TRP ALA LEU SER ASN ILE ALA SER GLY GLY ASN
SEQRES 7 A 286 GLU GLN ILE GLN ALA VAL ILE ASP ALA GLY ALA LEU PRO
SEQRES 8 A 286 ALA LEU VAL GLN LEU LEU SER SER PRO ASN GLU GLN ILE
SEQRES 9 A 286 LEU GLN GLU ALA LEU TRP ALA LEU SER ASN ILE ALA SER
SEQRES 10 A 286 GLY GLY ASN GLU GLN ILE GLN ALA VAL ILE ASP ALA GLY
SEQRES 11 A 286 ALA LEU PRO ALA LEU VAL GLN LEU LEU SER SER PRO ASN
SEQRES 12 A 286 GLU GLN ILE LEU GLN GLU ALA LEU TRP ALA LEU SER ASN
SEQRES 13 A 286 ILE ALA SER GLY GLY ASN GLU GLN ILE GLN ALA VAL ILE
SEQRES 14 A 286 ASP ALA GLY ALA LEU PRO ALA LEU VAL GLN LEU LEU SER
SEQRES 15 A 286 SER PRO ASN GLU GLN ILE LEU GLN GLU ALA LEU TRP ALA
SEQRES 16 A 286 LEU SER ASN ILE ALA SER GLY GLY ASN GLU GLN ILE GLN
SEQRES 17 A 286 ALA VAL ILE ASP ALA GLY ALA LEU PRO ALA LEU VAL GLN
SEQRES 18 A 286 LEU LEU SER SER PRO ASN GLU GLN ILE LEU GLN GLU ALA
SEQRES 19 A 286 LEU TRP ALA LEU SER ASN ILE ALA SER GLY GLY ASN GLU
SEQRES 20 A 286 GLN LYS GLN ALA VAL LYS GLU ALA GLY ALA LEU GLU LYS
SEQRES 21 A 286 LEU GLU GLN LEU GLN SER HIS GLU ASN GLU LYS ILE GLN
SEQRES 22 A 286 LYS GLU ALA GLN GLU ALA LEU GLU LYS LEU GLN SER HIS
SEQRES 1 B 255 GLY PRO GLY SER GLY SER PRO LYS ARG LYS ARG LYS ARG
SEQRES 2 B 255 LYS ARG GLU GLY LYS LEU MET SER LYS GLY GLU GLU LEU
SEQRES 3 B 255 PHE THR GLY VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY
SEQRES 4 B 255 ASP VAL ASN GLY HIS LYS PHE SER VAL ARG GLY GLU GLY
SEQRES 5 B 255 GLU GLY ASP ALA THR ASN GLY LYS LEU THR LEU LYS PHE
SEQRES 6 B 255 ILE CYS THR THR GLY LYS LEU PRO VAL PRO TRP PRO THR
SEQRES 7 B 255 LEU VAL THR THR LEU CRO VAL GLN CYS PHE SER ARG TYR
SEQRES 8 B 255 PRO ASP HIS MET LYS ARG HIS ASP PHE PHE LYS SER ALA
SEQRES 9 B 255 MET PRO GLU GLY TYR VAL GLN GLU ARG THR ILE SER PHE
SEQRES 10 B 255 LYS ASP ASP GLY THR TYR LYS THR ARG ALA GLU VAL LYS
SEQRES 11 B 255 PHE GLU GLY ASP THR LEU VAL ASN ARG ILE GLU LEU LYS
SEQRES 12 B 255 GLY ILE ASP PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS
SEQRES 13 B 255 LYS LEU GLU TYR ASN PHE ASN SER HIS ASN VAL TYR ILE
SEQRES 14 B 255 THR ALA ASP LYS GLN LYS ASN GLY ILE LYS ALA ASN PHE
SEQRES 15 B 255 LYS ILE ARG HIS ASN VAL GLU ASP GLY SER VAL GLN LEU
SEQRES 16 B 255 ALA ASP HIS TYR GLN GLN ASN THR PRO ILE GLY ASP GLY
SEQRES 17 B 255 PRO VAL LEU LEU PRO ASP ASN HIS TYR LEU SER THR GLN
SEQRES 18 B 255 SER VAL LEU SER LYS ASP PRO ASN GLU LYS ARG ASP HIS
SEQRES 19 B 255 MET VAL LEU LEU GLU PHE VAL THR ALA ALA GLY ILE THR
SEQRES 20 B 255 HIS GLY MET ASP GLU LEU TYR LYS
SEQRES 1 C 286 GLY PRO GLY SER GLU LEU PRO GLN MET VAL GLN GLN LEU
SEQRES 2 C 286 ASN SER PRO ASP GLN GLN GLU LEU GLN SER ALA LEU ARG
SEQRES 3 C 286 LYS LEU SER GLN ILE ALA SER GLY GLY ASN GLU GLN ILE
SEQRES 4 C 286 GLN ALA VAL ILE ASP ALA GLY ALA LEU PRO ALA LEU VAL
SEQRES 5 C 286 GLN LEU LEU SER SER PRO ASN GLU GLN ILE LEU GLN GLU
SEQRES 6 C 286 ALA LEU TRP ALA LEU SER ASN ILE ALA SER GLY GLY ASN
SEQRES 7 C 286 GLU GLN ILE GLN ALA VAL ILE ASP ALA GLY ALA LEU PRO
SEQRES 8 C 286 ALA LEU VAL GLN LEU LEU SER SER PRO ASN GLU GLN ILE
SEQRES 9 C 286 LEU GLN GLU ALA LEU TRP ALA LEU SER ASN ILE ALA SER
SEQRES 10 C 286 GLY GLY ASN GLU GLN ILE GLN ALA VAL ILE ASP ALA GLY
SEQRES 11 C 286 ALA LEU PRO ALA LEU VAL GLN LEU LEU SER SER PRO ASN
SEQRES 12 C 286 GLU GLN ILE LEU GLN GLU ALA LEU TRP ALA LEU SER ASN
SEQRES 13 C 286 ILE ALA SER GLY GLY ASN GLU GLN ILE GLN ALA VAL ILE
SEQRES 14 C 286 ASP ALA GLY ALA LEU PRO ALA LEU VAL GLN LEU LEU SER
SEQRES 15 C 286 SER PRO ASN GLU GLN ILE LEU GLN GLU ALA LEU TRP ALA
SEQRES 16 C 286 LEU SER ASN ILE ALA SER GLY GLY ASN GLU GLN ILE GLN
SEQRES 17 C 286 ALA VAL ILE ASP ALA GLY ALA LEU PRO ALA LEU VAL GLN
SEQRES 18 C 286 LEU LEU SER SER PRO ASN GLU GLN ILE LEU GLN GLU ALA
SEQRES 19 C 286 LEU TRP ALA LEU SER ASN ILE ALA SER GLY GLY ASN GLU
SEQRES 20 C 286 GLN LYS GLN ALA VAL LYS GLU ALA GLY ALA LEU GLU LYS
SEQRES 21 C 286 LEU GLU GLN LEU GLN SER HIS GLU ASN GLU LYS ILE GLN
SEQRES 22 C 286 LYS GLU ALA GLN GLU ALA LEU GLU LYS LEU GLN SER HIS
SEQRES 1 D 255 GLY PRO GLY SER GLY SER PRO LYS ARG LYS ARG LYS ARG
SEQRES 2 D 255 LYS ARG GLU GLY LYS LEU MET SER LYS GLY GLU GLU LEU
SEQRES 3 D 255 PHE THR GLY VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY
SEQRES 4 D 255 ASP VAL ASN GLY HIS LYS PHE SER VAL ARG GLY GLU GLY
SEQRES 5 D 255 GLU GLY ASP ALA THR ASN GLY LYS LEU THR LEU LYS PHE
SEQRES 6 D 255 ILE CYS THR THR GLY LYS LEU PRO VAL PRO TRP PRO THR
SEQRES 7 D 255 LEU VAL THR THR LEU CRO VAL GLN CYS PHE SER ARG TYR
SEQRES 8 D 255 PRO ASP HIS MET LYS ARG HIS ASP PHE PHE LYS SER ALA
SEQRES 9 D 255 MET PRO GLU GLY TYR VAL GLN GLU ARG THR ILE SER PHE
SEQRES 10 D 255 LYS ASP ASP GLY THR TYR LYS THR ARG ALA GLU VAL LYS
SEQRES 11 D 255 PHE GLU GLY ASP THR LEU VAL ASN ARG ILE GLU LEU LYS
SEQRES 12 D 255 GLY ILE ASP PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS
SEQRES 13 D 255 LYS LEU GLU TYR ASN PHE ASN SER HIS ASN VAL TYR ILE
SEQRES 14 D 255 THR ALA ASP LYS GLN LYS ASN GLY ILE LYS ALA ASN PHE
SEQRES 15 D 255 LYS ILE ARG HIS ASN VAL GLU ASP GLY SER VAL GLN LEU
SEQRES 16 D 255 ALA ASP HIS TYR GLN GLN ASN THR PRO ILE GLY ASP GLY
SEQRES 17 D 255 PRO VAL LEU LEU PRO ASP ASN HIS TYR LEU SER THR GLN
SEQRES 18 D 255 SER VAL LEU SER LYS ASP PRO ASN GLU LYS ARG ASP HIS
SEQRES 19 D 255 MET VAL LEU LEU GLU PHE VAL THR ALA ALA GLY ILE THR
SEQRES 20 D 255 HIS GLY MET ASP GLU LEU TYR LYS
MODRES 5MFC CRO B 1066 GLY CHROMOPHORE
MODRES 5MFC CRO D 1066 GLY CHROMOPHORE
HET CRO B1066 22
HET CRO D1066 22
HET ACT B1301 4
HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-
HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-
HETNAM 3 CRO YL}ACETIC ACID
HETNAM ACT ACETATE ION
HETSYN CRO PEPTIDE DERIVED CHROMOPHORE
FORMUL 2 CRO 2(C15 H17 N3 O5)
FORMUL 5 ACT C2 H3 O2 1-
FORMUL 6 HOH *78(H2 O)
HELIX 1 AA1 GLU A 12 LEU A 20 1 9
HELIX 2 AA2 ASP A 24 SER A 40 1 17
HELIX 3 AA3 GLY A 42 ALA A 52 1 11
HELIX 4 AA4 ALA A 54 LEU A 61 1 8
HELIX 5 AA5 LEU A 62 SER A 64 5 3
HELIX 6 AA6 ASN A 66 ALA A 81 1 16
HELIX 7 AA7 GLY A 84 ALA A 94 1 11
HELIX 8 AA8 GLY A 95 LEU A 103 1 9
HELIX 9 AA9 LEU A 104 SER A 106 5 3
HELIX 10 AB1 ASN A 108 ALA A 123 1 16
HELIX 11 AB2 GLY A 126 ALA A 136 1 11
HELIX 12 AB3 ALA A 138 LEU A 145 1 8
HELIX 13 AB4 LEU A 146 SER A 148 5 3
HELIX 14 AB5 ASN A 150 ALA A 165 1 16
HELIX 15 AB6 GLY A 168 ALA A 178 1 11
HELIX 16 AB7 GLY A 179 LEU A 187 1 9
HELIX 17 AB8 ASN A 192 ALA A 207 1 16
HELIX 18 AB9 GLY A 210 ALA A 220 1 11
HELIX 19 AC1 GLY A 221 LEU A 229 1 9
HELIX 20 AC2 ASN A 234 SER A 250 1 17
HELIX 21 AC3 GLY A 252 GLY A 263 1 12
HELIX 22 AC4 GLY A 263 LEU A 271 1 9
HELIX 23 AC5 GLU A 277 GLN A 291 1 15
HELIX 24 AC6 LYS B 1003 THR B 1009 5 7
HELIX 25 AC7 PRO B 1056 VAL B 1061 5 6
HELIX 26 AC8 VAL B 1068 SER B 1072 5 5
HELIX 27 AC9 PRO B 1075 HIS B 1081 5 7
HELIX 28 AD1 ASP B 1082 ALA B 1087 1 6
HELIX 29 AD2 LYS B 1156 ASN B 1159 5 4
HELIX 30 AD3 GLU C 12 LEU C 20 1 9
HELIX 31 AD4 ASP C 24 ALA C 39 1 16
HELIX 32 AD5 GLY C 42 ALA C 52 1 11
HELIX 33 AD6 ALA C 54 LEU C 61 1 8
HELIX 34 AD7 LEU C 62 SER C 64 5 3
HELIX 35 AD8 ASN C 66 ALA C 81 1 16
HELIX 36 AD9 GLY C 84 ALA C 94 1 11
HELIX 37 AE1 GLY C 95 LEU C 103 1 9
HELIX 38 AE2 LEU C 104 SER C 106 5 3
HELIX 39 AE3 ASN C 108 ALA C 123 1 16
HELIX 40 AE4 GLY C 126 ALA C 136 1 11
HELIX 41 AE5 ALA C 138 LEU C 145 1 8
HELIX 42 AE6 LEU C 146 SER C 148 5 3
HELIX 43 AE7 ASN C 150 ALA C 165 1 16
HELIX 44 AE8 GLY C 168 ALA C 178 1 11
HELIX 45 AE9 GLY C 179 LEU C 187 1 9
HELIX 46 AF1 ASN C 192 ALA C 207 1 16
HELIX 47 AF2 GLY C 210 ALA C 220 1 11
HELIX 48 AF3 GLY C 221 LEU C 229 1 9
HELIX 49 AF4 ASN C 234 SER C 250 1 17
HELIX 50 AF5 GLY C 252 GLY C 263 1 12
HELIX 51 AF6 GLY C 263 LEU C 271 1 9
HELIX 52 AF7 ASN C 276 LEU C 290 1 15
HELIX 53 AF8 LYS D 1003 THR D 1009 5 7
HELIX 54 AF9 PRO D 1056 VAL D 1061 5 6
HELIX 55 AG1 VAL D 1068 SER D 1072 5 5
HELIX 56 AG2 PRO D 1075 HIS D 1081 5 7
HELIX 57 AG3 ASP D 1082 ALA D 1087 1 6
HELIX 58 AG4 LYS D 1156 ASN D 1159 5 4
SHEET 1 AA112 VAL B1012 VAL B1022 0
SHEET 2 AA112 HIS B1025 ASP B1036 -1 O PHE B1027 N GLY B1020
SHEET 3 AA112 LYS B1041 CYS B1048 -1 O ILE B1047 N ARG B1030
SHEET 4 AA112 HIS B1217 ALA B1227 -1 O LEU B1220 N LEU B1044
SHEET 5 AA112 HIS B1199 SER B1208 -1 N SER B1202 O THR B1225
SHEET 6 AA112 HIS B1148 ASP B1155 -1 N VAL B1150 O LEU B1201
SHEET 7 AA112 GLY B1160 ASN B1170 -1 O LYS B1162 N THR B1153
SHEET 8 AA112 VAL B1176 PRO B1187 -1 O GLN B1177 N HIS B1169
SHEET 9 AA112 TYR B1092 PHE B1100 -1 N GLU B1095 O GLN B1184
SHEET 10 AA112 THR B1105 GLU B1115 -1 O TYR B1106 N ILE B1098
SHEET 11 AA112 THR B1118 ILE B1128 -1 O VAL B1120 N LYS B1113
SHEET 12 AA112 VAL B1012 VAL B1022 1 N GLU B1017 O ILE B1123
SHEET 1 AA212 VAL D1012 VAL D1022 0
SHEET 2 AA212 HIS D1025 ASP D1036 -1 O PHE D1027 N GLY D1020
SHEET 3 AA212 LYS D1041 CYS D1048 -1 O ILE D1047 N ARG D1030
SHEET 4 AA212 HIS D1217 ALA D1227 -1 O LEU D1220 N LEU D1044
SHEET 5 AA212 HIS D1199 SER D1208 -1 N SER D1202 O THR D1225
SHEET 6 AA212 HIS D1148 ASP D1155 -1 N VAL D1150 O LEU D1201
SHEET 7 AA212 GLY D1160 ASN D1170 -1 O LYS D1162 N THR D1153
SHEET 8 AA212 VAL D1176 PRO D1187 -1 O GLN D1177 N HIS D1169
SHEET 9 AA212 TYR D1092 PHE D1100 -1 N GLU D1095 O GLN D1184
SHEET 10 AA212 THR D1105 GLU D1115 -1 O TYR D1106 N ILE D1098
SHEET 11 AA212 THR D1118 ILE D1128 -1 O VAL D1120 N LYS D1113
SHEET 12 AA212 VAL D1012 VAL D1022 1 N GLU D1017 O ILE D1123
LINK C LEU B1064 N1 CRO B1066 1555 1555 1.37
LINK C3 CRO B1066 N VAL B1068 1555 1555 1.28
LINK C LEU D1064 N1 CRO D1066 1555 1555 1.36
LINK C3 CRO D1066 N VAL D1068 1555 1555 1.28
CISPEP 1 MET B 1088 PRO B 1089 0 7.31
CISPEP 2 MET D 1088 PRO D 1089 0 2.36
SITE 1 AC1 5 GLU A 72 TRP A 75 LYS B1003 PRO B1192
SITE 2 AC1 5 HOH B1401
CRYST1 81.110 124.240 245.330 90.00 90.00 90.00 C 2 2 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012329 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008049 0.000000 0.00000
SCALE3 0.000000 0.000000 0.004076 0.00000