HEADER SPLICING 19-NOV-16 5MFY TITLE RBM5 OCRE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 451-511; COMPND 5 SYNONYM: OCRE,PROTEIN G15,PUTATIVE TUMOR SUPPRESSOR LUCA15,RNA- COMPND 6 BINDING MOTIF PROTEIN 5,RENAL CARCINOMA ANTIGEN NY-REN-9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM5, H37, LUCA15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SPLICING, OCRE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR L.R.WARNER,A.MOURAO,K.SONI,M.SATTLER REVDAT 3 19-JUN-24 5MFY 1 REMARK REVDAT 2 08-MAY-19 5MFY 1 REMARK REVDAT 1 07-DEC-16 5MFY 0 JRNL AUTH A.MOURAO,S.BONNAL,K.SONI,L.WARNER,R.BORDONNE,J.VALCARCEL, JRNL AUTH 2 M.SATTLER JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION OF SPLICEOSOMAL JRNL TITL 2 SMN/B/B' PROTEINS BY THE RBM5 OCRE DOMAIN IN SPLICING JRNL TITL 3 REGULATION. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27894420 JRNL DOI 10.7554/ELIFE.14707 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MFY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002355. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 70; 70 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 OCRE5, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 10 % D2O, REMARK 210 90 % H2O, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 2D 1H-13C HSQC; 2D 1H- REMARK 210 13C HSQC AROMATIC; 3D HNCO; 3D REMARK 210 H(CCO)NH; 3D C(CO)NH; HECB KAY; REMARK 210 HDCB KAY; 3D 1H-13C NOESY; 3D 1H- REMARK 210 15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, CCPNMR ANALYSIS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 34 H SER A 37 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 -62.17 70.42 REMARK 500 1 MET A 3 47.26 -93.38 REMARK 500 1 THR A 5 97.72 -69.21 REMARK 500 1 GLU A 63 91.04 -64.11 REMARK 500 2 ALA A 2 -50.96 -146.81 REMARK 500 2 GLN A 46 63.65 62.93 REMARK 500 3 ALA A 2 139.57 71.90 REMARK 500 3 ALA A 8 -169.26 -104.97 REMARK 500 3 ALA A 62 42.90 -146.68 REMARK 500 5 LYS A 6 -74.46 -128.52 REMARK 500 6 ALA A 61 37.16 -91.02 REMARK 500 6 ALA A 62 109.80 67.77 REMARK 500 7 ALA A 2 -35.94 73.24 REMARK 500 7 MET A 3 -32.23 74.82 REMARK 500 7 GLN A 46 63.58 63.48 REMARK 500 8 LYS A 6 -159.75 -125.88 REMARK 500 9 MET A 3 -65.93 -134.45 REMARK 500 9 ALA A 62 -67.24 -133.54 REMARK 500 9 GLU A 63 52.54 -90.32 REMARK 500 10 ALA A 2 -78.82 -149.33 REMARK 500 10 ALA A 62 -36.17 73.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34068 RELATED DB: BMRB REMARK 900 RBM5 OCRE DOMAIN DBREF 5MFY A 4 64 UNP P52756 RBM5_HUMAN 451 511 SEQADV 5MFY GLY A 1 UNP P52756 EXPRESSION TAG SEQADV 5MFY ALA A 2 UNP P52756 EXPRESSION TAG SEQADV 5MFY MET A 3 UNP P52756 EXPRESSION TAG SEQRES 1 A 64 GLY ALA MET GLY THR LYS TYR ALA VAL PRO ASP THR SER SEQRES 2 A 64 THR TYR GLN TYR ASP GLU SER SER GLY TYR TYR TYR ASP SEQRES 3 A 64 PRO THR THR GLY LEU TYR TYR ASP PRO ASN SER GLN TYR SEQRES 4 A 64 TYR TYR ASN SER LEU THR GLN GLN TYR LEU TYR TRP ASP SEQRES 5 A 64 GLY GLU LYS GLU THR TYR VAL PRO ALA ALA GLU SER HELIX 1 AA1 ASP A 11 TYR A 15 5 5 SHEET 1 AA1 6 GLN A 16 ASP A 18 0 SHEET 2 AA1 6 TYR A 23 ASP A 26 -1 O TYR A 23 N ASP A 18 SHEET 3 AA1 6 LEU A 31 TYR A 33 -1 O TYR A 33 N TYR A 24 SHEET 4 AA1 6 TYR A 40 ASN A 42 -1 O TYR A 41 N TYR A 32 SHEET 5 AA1 6 GLN A 47 ASP A 52 -1 O LEU A 49 N TYR A 40 SHEET 6 AA1 6 THR A 57 PRO A 60 -1 O VAL A 59 N TYR A 50 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1