HEADER TRANSFERASE 20-NOV-16 5MG1 TITLE STRUCTURE OF THE PHOTOSENSORY MODULE OF DEINOCOCCUS PHYTOCHROME BY TITLE 2 SERIAL FEMTOSECOND X-RAY CRYSTALLOGRAPHY COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOPHYTOCHROME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHYTOCHROME-LIKE PROTEIN; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS (STRAIN ATCC 13939 / SOURCE 3 DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / SOURCE 4 VKM B-1422); SOURCE 5 ORGANISM_TAXID: 243230; SOURCE 6 STRAIN: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / SOURCE 7 NCIMB 9279 / R1 / VKM B-1422; SOURCE 8 GENE: BPHP, DR_A0050; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PHOTOSENSORY MODULE, PHYTOCHROME, BILIVERDIN, PHOTORECEPTOR, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.S.BURGIE,F.D.FULLER,S.GUL,I.D.YOUNG,A.S.BREWSTER,J.CLINGER,B.ANDI, AUTHOR 2 C.STAN,M.ALLAIRE,S.NELSEN,R.ALONSO-MORI,G.N.PHILLIPS JR.,N.K.SAUTER, AUTHOR 3 J.KERN,V.K.YACHANDRA,J.YANO,R.D.VIERSTRA,A.M.ORVILLE REVDAT 5 17-JAN-24 5MG1 1 COMPND HETNAM REVDAT 4 14-NOV-18 5MG1 1 SOURCE REMARK REVDAT 3 12-APR-17 5MG1 1 JRNL REVDAT 2 15-MAR-17 5MG1 1 JRNL REVDAT 1 22-FEB-17 5MG1 0 JRNL AUTH F.D.FULLER,S.GUL,R.CHATTERJEE,E.S.BURGIE,I.D.YOUNG, JRNL AUTH 2 H.LEBRETTE,V.SRINIVAS,A.S.BREWSTER,T.MICHELS-CLARK, JRNL AUTH 3 J.A.CLINGER,B.ANDI,M.IBRAHIM,E.PASTOR,C.DE LICHTENBERG, JRNL AUTH 4 R.HUSSEIN,C.J.POLLOCK,M.ZHANG,C.A.STAN,T.KROLL,T.FRANSSON, JRNL AUTH 5 C.WENINGER,M.KUBIN,P.ALLER,L.LASSALLE,P.BRAUER,M.D.MILLER, JRNL AUTH 6 M.AMIN,S.KOROIDOV,C.G.ROESSLER,M.ALLAIRE,R.G.SIERRA, JRNL AUTH 7 P.T.DOCKER,J.M.GLOWNIA,S.NELSON,J.E.KOGLIN,D.ZHU,M.CHOLLET, JRNL AUTH 8 S.SONG,H.LEMKE,M.LIANG,D.SOKARAS,R.ALONSO-MORI,A.ZOUNI, JRNL AUTH 9 J.MESSINGER,U.BERGMANN,A.K.BOAL,J.M.BOLLINGER,C.KREBS, JRNL AUTH10 M.HOGBOM,G.N.PHILLIPS,R.D.VIERSTRA,N.K.SAUTER,A.M.ORVILLE, JRNL AUTH11 J.KERN,V.K.YACHANDRA,J.YANO JRNL TITL DROP-ON-DEMAND SAMPLE DELIVERY FOR STUDYING BIOCATALYSTS IN JRNL TITL 2 ACTION AT X-RAY FREE-ELECTRON LASERS. JRNL REF NAT. METHODS V. 14 443 2017 JRNL REFN ESSN 1548-7105 JRNL PMID 28250468 JRNL DOI 10.1038/NMETH.4195 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.8961 - 5.9899 1.00 2681 164 0.1989 0.2214 REMARK 3 2 5.9899 - 4.7573 1.00 2551 123 0.2030 0.2227 REMARK 3 3 4.7573 - 4.1568 1.00 2530 123 0.1821 0.2405 REMARK 3 4 4.1568 - 3.7772 1.00 2462 152 0.2212 0.2776 REMARK 3 5 3.7772 - 3.5066 1.00 2470 135 0.2541 0.2576 REMARK 3 6 3.5066 - 3.3000 1.00 2454 123 0.2992 0.3417 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3917 REMARK 3 ANGLE : 0.562 5370 REMARK 3 CHIRALITY : 0.038 599 REMARK 3 PLANARITY : 0.004 705 REMARK 3 DIHEDRAL : 17.379 2344 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 550 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1022 65.3452 8.3921 REMARK 3 T TENSOR REMARK 3 T11: 0.4655 T22: 0.7965 REMARK 3 T33: 0.5551 T12: -0.1333 REMARK 3 T13: 0.0186 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 1.1646 L22: 2.1574 REMARK 3 L33: 2.0124 L12: -0.9841 REMARK 3 L13: 0.4551 L23: -0.7781 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: -0.0933 S13: -0.0519 REMARK 3 S21: 0.1366 S22: -0.0909 S23: -0.1064 REMARK 3 S31: -0.0993 S32: 0.0643 S33: 0.0619 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MG1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002424. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : MFX REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE MFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.305 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : COMPOUND REFRACTIVE LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX170-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCTBX.PRIME, CCTBX.XFEL, PSANA REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15996 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 131.376 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 39.16 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.2340 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 8.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 131.3 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 66.96 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 137.3 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: PAS-GAF FROM PDB 2O9C, AND PHY DOMAIN FROM 4Q0J REMARK 200 REMARK 200 REMARK: 100 MICRON NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, TACSIMATE PH 6.0, TACSIMATE REMARK 280 PH 7.0, ETHYLENE GLYCOL, PIPES-NAOH PH 6.5, BATCH MODE, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.40000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 100.80000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.40000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 100.80000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.40000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 100.80000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 50.40000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 100.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 ALA A -13 REMARK 465 LEU A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 ASP A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 107 REMARK 465 ALA A 108 REMARK 465 TRP A 132 REMARK 465 ASP A 133 REMARK 465 SER A 134 REMARK 465 THR A 135 REMARK 465 GLY A 431 REMARK 465 GLU A 432 REMARK 465 GLU A 503 REMARK 465 HIS A 504 REMARK 465 HIS A 505 REMARK 465 HIS A 506 REMARK 465 HIS A 507 REMARK 465 HIS A 508 REMARK 465 HIS A 509 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 273 145.52 -171.14 REMARK 500 LEU A 379 111.48 -163.08 REMARK 500 ALA A 414 -7.57 65.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LBV A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Q0J RELATED DB: PDB REMARK 900 XFEL DATA VS SYNCHROTRON DATA DBREF 5MG1 A 1 502 UNP Q9RZA4 BPHY_DEIRA 1 502 SEQADV 5MG1 MET A -14 UNP Q9RZA4 INITIATING METHIONINE SEQADV 5MG1 ALA A -13 UNP Q9RZA4 EXPRESSION TAG SEQADV 5MG1 LEU A -12 UNP Q9RZA4 EXPRESSION TAG SEQADV 5MG1 SER A -11 UNP Q9RZA4 EXPRESSION TAG SEQADV 5MG1 MET A -10 UNP Q9RZA4 EXPRESSION TAG SEQADV 5MG1 THR A -9 UNP Q9RZA4 EXPRESSION TAG SEQADV 5MG1 GLY A -8 UNP Q9RZA4 EXPRESSION TAG SEQADV 5MG1 GLY A -7 UNP Q9RZA4 EXPRESSION TAG SEQADV 5MG1 GLN A -6 UNP Q9RZA4 EXPRESSION TAG SEQADV 5MG1 GLN A -5 UNP Q9RZA4 EXPRESSION TAG SEQADV 5MG1 MET A -4 UNP Q9RZA4 EXPRESSION TAG SEQADV 5MG1 GLY A -3 UNP Q9RZA4 EXPRESSION TAG SEQADV 5MG1 ARG A -2 UNP Q9RZA4 EXPRESSION TAG SEQADV 5MG1 GLY A -1 UNP Q9RZA4 EXPRESSION TAG SEQADV 5MG1 SER A 0 UNP Q9RZA4 EXPRESSION TAG SEQADV 5MG1 GLU A 503 UNP Q9RZA4 EXPRESSION TAG SEQADV 5MG1 HIS A 504 UNP Q9RZA4 EXPRESSION TAG SEQADV 5MG1 HIS A 505 UNP Q9RZA4 EXPRESSION TAG SEQADV 5MG1 HIS A 506 UNP Q9RZA4 EXPRESSION TAG SEQADV 5MG1 HIS A 507 UNP Q9RZA4 EXPRESSION TAG SEQADV 5MG1 HIS A 508 UNP Q9RZA4 EXPRESSION TAG SEQADV 5MG1 HIS A 509 UNP Q9RZA4 EXPRESSION TAG SEQRES 1 A 524 MET ALA LEU SER MET THR GLY GLY GLN GLN MET GLY ARG SEQRES 2 A 524 GLY SER MET SER ARG ASP PRO LEU PRO PHE PHE PRO PRO SEQRES 3 A 524 LEU TYR LEU GLY GLY PRO GLU ILE THR THR GLU ASN CYS SEQRES 4 A 524 GLU ARG GLU PRO ILE HIS ILE PRO GLY SER ILE GLN PRO SEQRES 5 A 524 HIS GLY ALA LEU LEU THR ALA ASP GLY HIS SER GLY GLU SEQRES 6 A 524 VAL LEU GLN MET SER LEU ASN ALA ALA THR PHE LEU GLY SEQRES 7 A 524 GLN GLU PRO THR VAL LEU ARG GLY GLN THR LEU ALA ALA SEQRES 8 A 524 LEU LEU PRO GLU GLN TRP PRO ALA LEU GLN ALA ALA LEU SEQRES 9 A 524 PRO PRO GLY CYS PRO ASP ALA LEU GLN TYR ARG ALA THR SEQRES 10 A 524 LEU ASP TRP PRO ALA ALA GLY HIS LEU SER LEU THR VAL SEQRES 11 A 524 HIS ARG VAL GLY GLU LEU LEU ILE LEU GLU PHE GLU PRO SEQRES 12 A 524 THR GLU ALA TRP ASP SER THR GLY PRO HIS ALA LEU ARG SEQRES 13 A 524 ASN ALA MET PHE ALA LEU GLU SER ALA PRO ASN LEU ARG SEQRES 14 A 524 ALA LEU ALA GLU VAL ALA THR GLN THR VAL ARG GLU LEU SEQRES 15 A 524 THR GLY PHE ASP ARG VAL MET LEU TYR LYS PHE ALA PRO SEQRES 16 A 524 ASP ALA THR GLY GLU VAL ILE ALA GLU ALA ARG ARG GLU SEQRES 17 A 524 GLY LEU HIS ALA PHE LEU GLY HIS ARG PHE PRO ALA SER SEQRES 18 A 524 ASP ILE PRO ALA GLN ALA ARG ALA LEU TYR THR ARG HIS SEQRES 19 A 524 LEU LEU ARG LEU THR ALA ASP THR ARG ALA ALA ALA VAL SEQRES 20 A 524 PRO LEU ASP PRO VAL LEU ASN PRO GLN THR ASN ALA PRO SEQRES 21 A 524 THR PRO LEU GLY GLY ALA VAL LEU ARG ALA THR SER PRO SEQRES 22 A 524 MET HIS MET GLN TYR LEU ARG ASN MET GLY VAL GLY SER SEQRES 23 A 524 SER LEU SER VAL SER VAL VAL VAL GLY GLY GLN LEU TRP SEQRES 24 A 524 GLY LEU ILE ALA CYS HIS HIS GLN THR PRO TYR VAL LEU SEQRES 25 A 524 PRO PRO ASP LEU ARG THR THR LEU GLU TYR LEU GLY ARG SEQRES 26 A 524 LEU LEU SER LEU GLN VAL GLN VAL LYS GLU ALA ALA ASP SEQRES 27 A 524 VAL ALA ALA PHE ARG GLN SER LEU ARG GLU HIS HIS ALA SEQRES 28 A 524 ARG VAL ALA LEU ALA ALA ALA HIS SER LEU SER PRO HIS SEQRES 29 A 524 ASP THR LEU SER ASP PRO ALA LEU ASP LEU LEU GLY LEU SEQRES 30 A 524 MET ARG ALA GLY GLY LEU ILE LEU ARG PHE GLU GLY ARG SEQRES 31 A 524 TRP GLN THR LEU GLY GLU VAL PRO PRO ALA PRO ALA VAL SEQRES 32 A 524 ASP ALA LEU LEU ALA TRP LEU GLU THR GLN PRO GLY ALA SEQRES 33 A 524 LEU VAL GLN THR ASP ALA LEU GLY GLN LEU TRP PRO ALA SEQRES 34 A 524 GLY ALA ASP LEU ALA PRO SER ALA ALA GLY LEU LEU ALA SEQRES 35 A 524 ILE SER VAL GLY GLU GLY TRP SER GLU CYS LEU VAL TRP SEQRES 36 A 524 LEU ARG PRO GLU LEU ARG LEU GLU VAL ALA TRP GLY GLY SEQRES 37 A 524 ALA THR PRO ASP GLN ALA LYS ASP ASP LEU GLY PRO ARG SEQRES 38 A 524 HIS SER PHE ASP THR TYR LEU GLU GLU LYS ARG GLY TYR SEQRES 39 A 524 ALA GLU PRO TRP HIS PRO GLY GLU ILE GLU GLU ALA GLN SEQRES 40 A 524 ASP LEU ARG ASP THR LEU THR GLY ALA LEU GLU HIS HIS SEQRES 41 A 524 HIS HIS HIS HIS HET LBV A 601 43 HETNAM LBV 3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3- HETNAM 2 LBV METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4- HETNAM 3 LBV METHYL-PYRROL-1-IUM -2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3- HETNAM 4 LBV ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2- HETNAM 5 LBV YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3- YL]PROPANOIC HETNAM 6 LBV ACID HETSYN LBV 2(R),3(E)- PHYTOCHROMOBILIN FORMUL 2 LBV C33 H37 N4 O6 1+ FORMUL 3 HOH *8(H2 O) HELIX 1 AA1 PRO A 11 GLY A 15 5 5 HELIX 2 AA2 ASN A 23 GLU A 27 5 5 HELIX 3 AA3 ASN A 57 GLY A 63 1 7 HELIX 4 AA4 GLU A 65 ARG A 70 1 6 HELIX 5 AA5 THR A 73 LEU A 78 1 6 HELIX 6 AA6 GLN A 81 LEU A 89 1 9 HELIX 7 AA7 HIS A 138 SER A 149 1 12 HELIX 8 AA8 ASN A 152 GLY A 169 1 18 HELIX 9 AA9 PRO A 204 ILE A 208 5 5 HELIX 10 AB1 PRO A 209 HIS A 219 1 11 HELIX 11 AB2 SER A 257 MET A 267 1 11 HELIX 12 AB3 PRO A 298 HIS A 344 1 47 HELIX 13 AB4 SER A 347 SER A 353 1 7 HELIX 14 AB5 ASP A 358 MET A 363 1 6 HELIX 15 AB6 PRO A 384 GLU A 396 1 13 HELIX 16 AB7 ALA A 407 TRP A 412 1 6 HELIX 17 AB8 GLY A 415 ALA A 419 5 5 HELIX 18 AB9 THR A 455 ALA A 459 5 5 HELIX 19 AC1 HIS A 484 LEU A 502 1 19 SHEET 1 AA1 7 SER A 34 ILE A 35 0 SHEET 2 AA1 7 VAL A 232 ASP A 235 -1 O VAL A 232 N ILE A 35 SHEET 3 AA1 7 VAL A 51 SER A 55 -1 N MET A 54 O ASP A 235 SHEET 4 AA1 7 ALA A 40 ASP A 45 -1 N THR A 43 O LEU A 52 SHEET 5 AA1 7 LEU A 121 PRO A 128 -1 O PHE A 126 N ALA A 40 SHEET 6 AA1 7 HIS A 110 ARG A 117 -1 N HIS A 116 O ILE A 123 SHEET 7 AA1 7 GLN A 98 ASP A 104 -1 N TYR A 99 O VAL A 115 SHEET 1 AA2 5 GLU A 185 ARG A 191 0 SHEET 2 AA2 5 ARG A 172 LYS A 177 -1 N VAL A 173 O ALA A 190 SHEET 3 AA2 5 GLN A 282 HIS A 291 -1 O LEU A 286 N TYR A 176 SHEET 4 AA2 5 SER A 271 VAL A 279 -1 N VAL A 279 O GLN A 282 SHEET 5 AA2 5 LEU A 221 THR A 224 -1 N ARG A 222 O SER A 274 SHEET 1 AA3 5 ARG A 375 GLY A 380 0 SHEET 2 AA3 5 GLY A 367 PHE A 372 -1 N LEU A 370 O GLN A 377 SHEET 3 AA3 5 CYS A 437 ARG A 442 -1 O CYS A 437 N ARG A 371 SHEET 4 AA3 5 GLY A 424 SER A 429 -1 N GLY A 424 O ARG A 442 SHEET 5 AA3 5 LEU A 402 THR A 405 -1 N THR A 405 O LEU A 425 SHEET 1 AA4 2 LEU A 447 GLY A 452 0 SHEET 2 AA4 2 THR A 471 LYS A 476 -1 O GLU A 474 N VAL A 449 LINK SG CYS A 24 CBA LBV A 601 1555 1555 1.70 CISPEP 1 ASP A 235 PRO A 236 0 -2.33 SITE 1 AC1 20 CYS A 24 GLU A 27 ILE A 29 MET A 174 SITE 2 AC1 20 PHE A 203 SER A 206 ASP A 207 ILE A 208 SITE 3 AC1 20 PRO A 209 TYR A 216 ARG A 222 ARG A 254 SITE 4 AC1 20 SER A 257 HIS A 260 TYR A 263 SER A 272 SITE 5 AC1 20 SER A 274 HIS A 290 HOH A 702 HOH A 706 CRYST1 151.700 151.700 151.200 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006592 0.003806 0.000000 0.00000 SCALE2 0.000000 0.007612 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006614 0.00000