HEADER HYDROLASE 21-NOV-16 5MGA TITLE STRUCTURE OF THE CPF1 ENDONUCLEASE R-LOOP COMPLEX AFTER DNA CLEAVAGE CAVEAT 5MGA HIS A 694 HAS WRONG CHIRALITY AT ATOM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRISPR-ASSOCIATED ENDONUCLEASE CPF1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FNCPF1; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (40-MER); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (26-MER); COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (5'-D(P*CP*GP*TP*TP*AP*GP*AP*GP*AP*AP*GP*T)-3'); COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS SUBSP. NOVICIDA U112; SOURCE 3 ORGANISM_TAXID: 401614; SOURCE 4 GENE: CPF1, FTN_1397; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS SUBSP. NOVICIDA U112; SOURCE 10 ORGANISM_TAXID: 401614; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS SUBSP. NOVICIDA U112; SOURCE 14 ORGANISM_TAXID: 401614; SOURCE 15 MOL_ID: 4; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS SUBSP. NOVICIDA U112; SOURCE 18 ORGANISM_TAXID: 401614 KEYWDS FNCPF1, CPF1, R-LOOP, CRISPR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MONTOYA,S.STELLA REVDAT 3 24-OCT-18 5MGA 1 REMARK LINK REVDAT 2 28-JUN-17 5MGA 1 JRNL REVDAT 1 21-JUN-17 5MGA 0 JRNL AUTH S.STELLA,P.ALCON,G.MONTOYA JRNL TITL STRUCTURE OF THE CPF1 ENDONUCLEASE R-LOOP COMPLEX AFTER JRNL TITL 2 TARGET DNA CLEAVAGE. JRNL REF NATURE V. 546 559 2017 JRNL REFN ISSN 0028-0836 JRNL PMID 28562584 JRNL DOI 10.1038/NATURE22398 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 35724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1843 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2572 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.3970 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9595 REMARK 3 NUCLEIC ACID ATOMS : 1624 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 97.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.459 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.504 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 63.130 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 11581 ; 0.013 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 10198 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 15908 ; 1.649 ; 1.827 REMARK 3 BOND ANGLES OTHERS (DEGREES): 23587 ; 1.287 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1157 ; 7.926 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 498 ;43.860 ;25.562 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1833 ;20.499 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;14.555 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1685 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 11869 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2635 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4701 ; 2.033 ; 4.874 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4700 ; 2.033 ; 4.873 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5831 ; 3.628 ; 7.281 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5832 ; 3.628 ; 7.281 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 6880 ; 1.551 ; 4.611 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 6879 ; 1.551 ; 4.610 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 10078 ; 2.840 ; 6.889 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 47627 ; 9.189 ;84.102 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 47598 ; 9.178 ;84.074 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 1300 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9199 1.2885 -43.2034 REMARK 3 T TENSOR REMARK 3 T11: 0.1216 T22: 0.0471 REMARK 3 T33: 0.9268 T12: 0.0646 REMARK 3 T13: -0.0239 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.8693 L22: 0.7372 REMARK 3 L33: 1.8046 L12: -0.1162 REMARK 3 L13: 0.4129 L23: -0.7167 REMARK 3 S TENSOR REMARK 3 S11: -0.1674 S12: -0.0787 S13: -0.1407 REMARK 3 S21: 0.2579 S22: 0.1054 S23: -0.0937 REMARK 3 S31: -0.1848 S32: 0.0409 S33: 0.0620 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -19 B 20 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4395 8.1248 -35.3698 REMARK 3 T TENSOR REMARK 3 T11: 0.3149 T22: 0.1421 REMARK 3 T33: 0.6219 T12: 0.2050 REMARK 3 T13: 0.0056 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 1.2963 L22: 3.2904 REMARK 3 L33: 1.0119 L12: -0.9364 REMARK 3 L13: 0.9324 L23: -0.8156 REMARK 3 S TENSOR REMARK 3 S11: -0.3200 S12: -0.1577 S13: -0.1044 REMARK 3 S21: 0.6049 S22: 0.3240 S23: -0.0537 REMARK 3 S31: -0.3058 S32: -0.1281 S33: -0.0040 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -20 C 5 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6901 -2.5882 -45.2338 REMARK 3 T TENSOR REMARK 3 T11: 0.2213 T22: 0.3233 REMARK 3 T33: 1.0730 T12: 0.2158 REMARK 3 T13: -0.0591 T23: 0.0542 REMARK 3 L TENSOR REMARK 3 L11: 0.4629 L22: 0.4537 REMARK 3 L33: 0.1527 L12: -0.4139 REMARK 3 L13: -0.1830 L23: 0.2204 REMARK 3 S TENSOR REMARK 3 S11: -0.1287 S12: -0.1946 S13: -0.1244 REMARK 3 S21: 0.1884 S22: 0.3073 S23: 0.0788 REMARK 3 S31: 0.1285 S32: 0.1643 S33: -0.1786 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D -5 D 6 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5871 5.8571 -70.1676 REMARK 3 T TENSOR REMARK 3 T11: 0.2839 T22: 0.3530 REMARK 3 T33: 0.8342 T12: 0.1821 REMARK 3 T13: -0.0529 T23: 0.0546 REMARK 3 L TENSOR REMARK 3 L11: 7.5482 L22: 0.3913 REMARK 3 L33: 2.5563 L12: 1.5301 REMARK 3 L13: 0.2576 L23: 0.3831 REMARK 3 S TENSOR REMARK 3 S11: 0.2744 S12: -0.6432 S13: -0.7746 REMARK 3 S21: 0.1598 S22: -0.0905 S23: -0.2047 REMARK 3 S31: 0.6944 S32: 0.3197 S33: -0.1839 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MGA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39708 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 80.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 1.75000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.35M SODIUM THIOCYANATE AND 20.9% W/V REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 160.25650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 160.25650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.61150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.82600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.61150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.82600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 160.25650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.61150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.82600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 160.25650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.61150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.82600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 66230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 227 REMARK 465 ALA A 228 REMARK 465 ILE A 229 REMARK 465 ASN A 230 REMARK 465 THR A 250 REMARK 465 SER A 251 REMARK 465 GLU A 252 REMARK 465 VAL A 253 REMARK 465 GLN A 310 REMARK 465 ILE A 311 REMARK 465 VAL A 365 REMARK 465 GLU A 366 REMARK 465 GLU A 367 REMARK 465 LYS A 368 REMARK 465 SER A 369 REMARK 465 ILE A 370 REMARK 465 ALA A 383 REMARK 465 GLN A 384 REMARK 465 LYS A 385 REMARK 465 LEU A 386 REMARK 465 ASP A 387 REMARK 465 LEU A 388 REMARK 465 SER A 389 REMARK 465 LYS A 390 REMARK 465 ILE A 391 REMARK 465 TYR A 392 REMARK 465 PHE A 393 REMARK 465 LYS A 394 REMARK 465 ASN A 395 REMARK 465 ASP A 396 REMARK 465 SER A 410A REMARK 465 VAL A 410B REMARK 465 ILE A 410C REMARK 465 GLY A 410D REMARK 465 THR A 410E REMARK 465 ALA A 410F REMARK 465 VAL A 410G REMARK 465 LEU A 410H REMARK 465 GLU A 410I REMARK 465 TYR A 410J REMARK 465 ILE A 410K REMARK 465 THR A 410L REMARK 465 GLN A 410M REMARK 465 GLN A 410N REMARK 465 ILE A 410O REMARK 465 ALA A 410P REMARK 465 PRO A 410Q REMARK 465 LYS A 410R REMARK 465 ASN A 410S REMARK 465 LEU A 410T REMARK 465 ASP A 410U REMARK 465 ASN A 410V REMARK 465 PRO A 410W REMARK 465 SER A 410X REMARK 465 LYS A 410Y REMARK 465 LEU A 467A REMARK 465 ALA A 467B REMARK 465 LEU A 467C REMARK 465 GLU A 467D REMARK 465 GLU A 467E REMARK 465 PHE A 467F REMARK 465 ASN A 467G REMARK 465 LYS A 467H REMARK 465 HIS A 467I REMARK 465 ARG A 467J REMARK 465 ASP A 467K REMARK 465 ASN A 557A REMARK 465 ILE A 557B REMARK 465 LEU A 557C REMARK 465 ASP A 557D REMARK 465 LYS A 557E REMARK 465 HIS A 843 REMARK 465 PRO A 844 REMARK 465 ALA A 845 REMARK 465 LYS A 846 REMARK 465 GLU A 847 REMARK 465 ALA A 848 REMARK 465 ILE A 849 REMARK 465 ASN A 946 REMARK 465 ASP A 947 REMARK 465 ARG A 948 REMARK 465 MET A 949 REMARK 465 LYS A 950 REMARK 465 THR A 951 REMARK 465 PHE A 1012 REMARK 465 LYS A 1013 REMARK 465 ARG A 1014 REMARK 465 GLY A 1015 REMARK 465 ARG A 1016 REMARK 465 PHE A 1017 REMARK 465 LYS A 1018 REMARK 465 LYS A 1098 REMARK 465 TYR A 1099 REMARK 465 GLU A 1100 REMARK 465 SER A 1101 REMARK 465 ALA A 1137 REMARK 465 ALA A 1138 REMARK 465 LYS A 1139 REMARK 465 PHE A 1154 REMARK 465 ARG A 1155 REMARK 465 ASN A 1156 REMARK 465 SER A 1157 REMARK 465 ASP A 1158 REMARK 465 LYS A 1159 REMARK 465 SER A 1182 REMARK 465 ILE A 1183 REMARK 465 GLU A 1184 REMARK 465 TYR A 1185 REMARK 465 GLY A 1186 REMARK 465 HIS A 1187 REMARK 465 ALA A 1193 REMARK 465 THR A 1222 REMARK 465 GLY A 1223 REMARK 465 THR A 1224 REMARK 465 GLY A 1279 REMARK 465 LYS A 1280 REMARK 465 GLY A 1301 REMARK 465 SER A 1302 REMARK 465 GLU A 1303 REMARK 465 PHE A 1304 REMARK 465 GLU A 1305 REMARK 465 LEU A 1306 REMARK 465 GLU A 1307 REMARK 465 ASN A 1308 REMARK 465 LEU A 1309 REMARK 465 TYR A 1310 REMARK 465 PHE A 1311 REMARK 465 GLN A 1312 REMARK 465 GLY A 1313 REMARK 465 GLU A 1314 REMARK 465 LEU A 1315 REMARK 465 ARG A 1316 REMARK 465 ARG A 1317 REMARK 465 GLN A 1318 REMARK 465 ALA A 1319 REMARK 465 SER A 1320 REMARK 465 ALA A 1321 REMARK 465 LEU A 1322 REMARK 465 GLU A 1323 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 71 O REMARK 470 SER A 89 OG REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 LEU A 242 CG CD1 CD2 REMARK 470 THR A 243 OG1 CG2 REMARK 470 PHE A 244 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 245 CG OD1 OD2 REMARK 470 ASP A 247 CG OD1 OD2 REMARK 470 TYR A 248 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 ASN A 254 CG OD1 ND2 REMARK 470 PHE A 362 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 363 CG CD CE NZ REMARK 470 THR A 364 OG1 CG2 REMARK 470 LYS A 413 CG CD CE NZ REMARK 470 GLU A 414 CG CD OE1 OE2 REMARK 470 GLN A 415 CG CD OE1 NE2 REMARK 470 GLU A 416 CG CD OE1 OE2 REMARK 470 LEU A 417 CG CD1 CD2 REMARK 470 ILE A 418 CG1 CG2 CD1 REMARK 470 LYS A 420 CG CD CE NZ REMARK 470 LYS A 421 CG CD CE NZ REMARK 470 THR A 422 OG1 CG2 REMARK 470 GLU A 424 CG CD OE1 OE2 REMARK 470 LYS A 425 CG CD CE NZ REMARK 470 LYS A 459 CG CD CE NZ REMARK 470 TYR A 460 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 461 CG CD1 CD2 REMARK 470 SER A 462 OG REMARK 470 LEU A 463 CG CD1 CD2 REMARK 470 THR A 465 OG1 CG2 REMARK 470 ILE A 469 CG1 CG2 CD1 REMARK 470 GLN A 501 CG CD OE1 NE2 REMARK 470 LYS A 512 CG CD CE NZ REMARK 470 PHE A 543 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS A 544 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 545 CG1 CG2 CD1 REMARK 470 SER A 546 OG REMARK 470 GLN A 547 CG CD OE1 NE2 REMARK 470 SER A 548 OG REMARK 470 GLU A 550 CG CD OE1 OE2 REMARK 470 ASP A 555 CG OD1 OD2 REMARK 470 LYS A 556 CG CD CE NZ REMARK 470 ASN A 700 O REMARK 470 LYS A 839 CG CD CE NZ REMARK 470 LYS A 840 CG CD CE NZ REMARK 470 ILE A 841 CG1 CG2 CD1 REMARK 470 SER A 861 OG REMARK 470 ASN A1009 CG OD1 ND2 REMARK 470 VAL A1019 CG1 CG2 REMARK 470 GLU A1020 CG CD OE1 OE2 REMARK 470 LYS A1021 CG CD CE NZ REMARK 470 TYR A1096 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO A1097 CG CD REMARK 470 ASN A1160 CG OD1 ND2 REMARK 470 ASN A1162 CG OD1 ND2 REMARK 470 PHE A1240 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ASP A 528 OE1 GLN A 532 0.65 REMARK 500 O ASP A 528 OE1 GLN A 532 0.95 REMARK 500 O ASP A 528 CD GLN A 532 1.14 REMARK 500 O ASN A 495 O LEU A 499 1.28 REMARK 500 O LEU A 529 NE2 GLN A 532 1.29 REMARK 500 O ARG A 690 CB LYS A 705 1.42 REMARK 500 N LEU A 529 OE1 GLN A 532 1.44 REMARK 500 N ASN A 693 CD LYS A 705 1.47 REMARK 500 C LEU A 529 NE2 GLN A 532 1.56 REMARK 500 C ALA A 225 CD PRO A 226 1.74 REMARK 500 CA ASN A 693 CD LYS A 705 1.82 REMARK 500 C ASP A 528 CD GLN A 532 1.87 REMARK 500 N ASN A 693 CG LYS A 705 1.87 REMARK 500 O ASP A 528 CG GLN A 532 1.88 REMARK 500 OD1 ASN A 700 CE LYS A 709 1.91 REMARK 500 CB ASN A 693 CD LYS A 705 1.95 REMARK 500 OD1 ASN A 700 NZ LYS A 709 1.97 REMARK 500 CD LYS A 541 CB HIS A 544 2.00 REMARK 500 CA GLY A 701 OP1 DG D 2 2.00 REMARK 500 NZ LYS A 222 OD1 ASP A 261 2.05 REMARK 500 N GLY A 701 OP1 DG D 2 2.05 REMARK 500 NH1 ARG A 692 OP1 DG D 0 2.06 REMARK 500 O LEU A 75 O HOH A 1401 2.07 REMARK 500 CA LEU A 529 NE2 GLN A 532 2.08 REMARK 500 CA LEU A 529 OE1 GLN A 532 2.12 REMARK 500 O THR A 604 OD1 ASN A 617 2.13 REMARK 500 CA LEU A 529 CD GLN A 532 2.14 REMARK 500 CA ASP A 528 OE1 GLN A 532 2.14 REMARK 500 O LYS A 869 OP1 A B -18 2.14 REMARK 500 O LEU A 221 O ALA A 225 2.15 REMARK 500 NZ LYS A 87 OE2 GLU A 213 2.15 REMARK 500 O LYS A 496 CB GLN A 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1481 O HOH A 1481 4555 1.84 REMARK 500 O HOH A 1455 O HOH A 1455 3554 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 544 CA HIS A 544 CB -0.203 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 70 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 PRO A 226 C - N - CD ANGL. DEV. = -51.4 DEGREES REMARK 500 LEU A 572 CB - CG - CD2 ANGL. DEV. = 10.4 DEGREES REMARK 500 HIS A 694 N - CA - C ANGL. DEV. = 23.0 DEGREES REMARK 500 PRO A 703 C - N - CD ANGL. DEV. = -27.3 DEGREES REMARK 500 PRO A1097 N - CA - CB ANGL. DEV. = 7.7 DEGREES REMARK 500 G B 5 O5' - P - OP1 ANGL. DEV. = 9.5 DEGREES REMARK 500 G B 5 O5' - P - OP2 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 70 24.54 -149.05 REMARK 500 ASP A 74 -9.99 -57.72 REMARK 500 ASP A 91 -161.56 -72.07 REMARK 500 ILE A 128 -61.45 -122.85 REMARK 500 ALA A 130 -127.39 48.42 REMARK 500 LYS A 154 106.74 -53.87 REMARK 500 ALA A 155 61.26 -118.56 REMARK 500 ASP A 194 73.90 -104.58 REMARK 500 ASP A 206 -61.60 -95.22 REMARK 500 LYS A 224 -6.79 80.01 REMARK 500 ALA A 225 111.15 -167.47 REMARK 500 ALA A 239 53.28 -106.82 REMARK 500 GLU A 240 38.25 -143.65 REMARK 500 THR A 243 -166.18 -165.76 REMARK 500 ARG A 256 -54.54 -123.93 REMARK 500 PHE A 264 -6.44 81.85 REMARK 500 ASN A 270 2.09 -67.03 REMARK 500 THR A 295 144.81 -37.68 REMARK 500 LYS A 314 24.34 -144.25 REMARK 500 THR A 332 106.88 -57.75 REMARK 500 ALA A 360 53.89 -112.99 REMARK 500 LEU A 374 -43.13 -135.59 REMARK 500 ASP A 408 -70.06 17.75 REMARK 500 ASP A 470 58.27 35.80 REMARK 500 PHE A 475 47.19 -86.57 REMARK 500 SER A 503 10.14 85.77 REMARK 500 ILE A 504 -40.12 -130.40 REMARK 500 LEU A 514 -168.15 -65.90 REMARK 500 LEU A 515 24.07 45.40 REMARK 500 ALA A 517 -2.53 77.88 REMARK 500 ALA A 519 17.75 -67.96 REMARK 500 HIS A 538 4.19 -67.10 REMARK 500 GLN A 547 60.34 64.52 REMARK 500 PHE A 561 -43.49 -133.91 REMARK 500 ASN A 574 3.84 -63.79 REMARK 500 GLU A 601 17.46 59.14 REMARK 500 THR A 604 40.95 -104.86 REMARK 500 ASN A 693 -107.62 -8.00 REMARK 500 HIS A 694 -36.38 -131.18 REMARK 500 LYS A 699 -75.44 -134.46 REMARK 500 LYS A 705 67.97 -150.75 REMARK 500 ARG A 740 -60.32 -106.28 REMARK 500 PHE A 741 6.02 86.44 REMARK 500 SER A 742 -130.36 51.33 REMARK 500 GLN A 818 -70.19 -57.15 REMARK 500 PRO A 857 -165.79 -66.23 REMARK 500 SER A 861 -9.17 74.81 REMARK 500 GLU A 864 -108.84 126.24 REMARK 500 ASP A 866 132.43 -38.18 REMARK 500 SER A 891 -125.50 63.01 REMARK 500 REMARK 500 THIS ENTRY HAS 63 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 75 LEU A 76 145.42 REMARK 500 ALA A 500 GLN A 501 -137.71 REMARK 500 PHE A 543 HIS A 544 -123.63 REMARK 500 HIS A 544 ILE A 545 -128.38 REMARK 500 ALA A 1234 ASP A 1235 147.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1495 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1496 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A1497 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A1498 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A1499 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A1500 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH A1501 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH A1502 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH A1503 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH A1504 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH A1505 DISTANCE = 7.71 ANGSTROMS REMARK 525 HOH A1506 DISTANCE = 8.46 ANGSTROMS REMARK 525 HOH A1507 DISTANCE = 8.49 ANGSTROMS REMARK 525 HOH A1508 DISTANCE = 9.13 ANGSTROMS REMARK 525 HOH A1509 DISTANCE = 9.17 ANGSTROMS REMARK 525 HOH A1510 DISTANCE = 9.40 ANGSTROMS REMARK 525 HOH A1511 DISTANCE = 9.52 ANGSTROMS REMARK 525 HOH A1512 DISTANCE = 9.71 ANGSTROMS REMARK 525 HOH A1513 DISTANCE = 11.17 ANGSTROMS REMARK 525 HOH A1514 DISTANCE = 12.01 ANGSTROMS REMARK 525 HOH B 208 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH B 209 DISTANCE = 7.59 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 102 DBREF 5MGA A 1 1300 UNP A0Q7Q2 CPF1_FRATN 1 1300 DBREF 5MGA B -19 20 PDB 5MGA 5MGA -19 20 DBREF 5MGA C -20 5 PDB 5MGA 5MGA -20 5 DBREF 5MGA D -5 6 PDB 5MGA 5MGA -5 6 SEQADV 5MGA ASP A 246 UNP A0Q7Q2 ILE 246 CONFLICT SEQADV 5MGA LEU A 467 UNP A0Q7Q2 LYS 457 CONFLICT SEQADV 5MGA ILE A 842 UNP A0Q7Q2 THR 842 CONFLICT SEQADV 5MGA GLY A 1301 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA SER A 1302 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA GLU A 1303 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA PHE A 1304 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA GLU A 1305 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA LEU A 1306 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA GLU A 1307 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA ASN A 1308 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA LEU A 1309 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA TYR A 1310 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA PHE A 1311 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA GLN A 1312 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA GLY A 1313 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA GLU A 1314 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA LEU A 1315 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA ARG A 1316 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA ARG A 1317 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA GLN A 1318 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA ALA A 1319 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA SER A 1320 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA ALA A 1321 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA LEU A 1322 UNP A0Q7Q2 EXPRESSION TAG SEQADV 5MGA GLU A 1323 UNP A0Q7Q2 EXPRESSION TAG SEQRES 1 A 1323 MET SER ILE TYR GLN GLU PHE VAL ASN LYS TYR SER LEU SEQRES 2 A 1323 SER LYS THR LEU ARG PHE GLU LEU ILE PRO GLN GLY LYS SEQRES 3 A 1323 THR LEU GLU ASN ILE LYS ALA ARG GLY LEU ILE LEU ASP SEQRES 4 A 1323 ASP GLU LYS ARG ALA LYS ASP TYR LYS LYS ALA LYS GLN SEQRES 5 A 1323 ILE ILE ASP LYS TYR HIS GLN PHE PHE ILE GLU GLU ILE SEQRES 6 A 1323 LEU SER SER VAL CYS ILE SER GLU ASP LEU LEU GLN ASN SEQRES 7 A 1323 TYR SER ASP VAL TYR PHE LYS LEU LYS LYS SER ASP ASP SEQRES 8 A 1323 ASP ASN LEU GLN LYS ASP PHE LYS SER ALA LYS ASP THR SEQRES 9 A 1323 ILE LYS LYS GLN ILE SER GLU TYR ILE LYS ASP SER GLU SEQRES 10 A 1323 LYS PHE LYS ASN LEU PHE ASN GLN ASN LEU ILE ASP ALA SEQRES 11 A 1323 LYS LYS GLY GLN GLU SER ASP LEU ILE LEU TRP LEU LYS SEQRES 12 A 1323 GLN SER LYS ASP ASN GLY ILE GLU LEU PHE LYS ALA ASN SEQRES 13 A 1323 SER ASP ILE THR ASP ILE ASP GLU ALA LEU GLU ILE ILE SEQRES 14 A 1323 LYS SER PHE LYS GLY TRP THR THR TYR PHE LYS GLY PHE SEQRES 15 A 1323 HIS GLU ASN ARG LYS ASN VAL TYR SER SER ASN ASP ILE SEQRES 16 A 1323 PRO THR SER ILE ILE TYR ARG ILE VAL ASP ASP ASN LEU SEQRES 17 A 1323 PRO LYS PHE LEU GLU ASN LYS ALA LYS TYR GLU SER LEU SEQRES 18 A 1323 LYS ASP LYS ALA PRO GLU ALA ILE ASN TYR GLU GLN ILE SEQRES 19 A 1323 LYS LYS ASP LEU ALA GLU GLU LEU THR PHE ASP ASP ASP SEQRES 20 A 1323 TYR LYS THR SER GLU VAL ASN GLN ARG VAL PHE SER LEU SEQRES 21 A 1323 ASP GLU VAL PHE GLU ILE ALA ASN PHE ASN ASN TYR LEU SEQRES 22 A 1323 ASN GLN SER GLY ILE THR LYS PHE ASN THR ILE ILE GLY SEQRES 23 A 1323 GLY LYS PHE VAL ASN GLY GLU ASN THR LYS ARG LYS GLY SEQRES 24 A 1323 ILE ASN GLU TYR ILE ASN LEU TYR SER GLN GLN ILE ASN SEQRES 25 A 1323 ASP LYS THR LEU LYS LYS TYR LYS MET SER VAL LEU PHE SEQRES 26 A 1323 LYS GLN ILE LEU SER ASP THR GLU SER LYS SER PHE VAL SEQRES 27 A 1323 ILE ASP LYS LEU GLU ASP ASP SER ASP VAL VAL THR THR SEQRES 28 A 1323 MET GLN SER PHE TYR GLU GLN ILE ALA ALA PHE LYS THR SEQRES 29 A 1323 VAL GLU GLU LYS SER ILE LYS GLU THR LEU SER LEU LEU SEQRES 30 A 1323 PHE ASP ASP LEU LYS ALA GLN LYS LEU ASP LEU SER LYS SEQRES 31 A 1323 ILE TYR PHE LYS ASN ASP LYS SER LEU THR ASP LEU SER SEQRES 32 A 1323 GLN GLN VAL PHE ASP ASP TYR SER VAL ILE GLY THR ALA SEQRES 33 A 1323 VAL LEU GLU TYR ILE THR GLN GLN ILE ALA PRO LYS ASN SEQRES 34 A 1323 LEU ASP ASN PRO SER LYS LYS GLU GLN GLU LEU ILE ALA SEQRES 35 A 1323 LYS LYS THR GLU LYS ALA LYS TYR LEU SER LEU GLU THR SEQRES 36 A 1323 ILE LEU LEU ALA LEU GLU GLU PHE ASN LYS HIS ARG ASP SEQRES 37 A 1323 ILE ASP LYS GLN CYS ARG PHE GLU GLU ILE LEU ALA ASN SEQRES 38 A 1323 PHE ALA ALA ILE PRO MET ILE PHE ASP GLU ILE ALA GLN SEQRES 39 A 1323 ASN LYS ASP ASN LEU ALA GLN ILE SER ILE LYS TYR GLN SEQRES 40 A 1323 ASN GLN GLY LYS LYS ASP LEU LEU GLN ALA SER ALA GLU SEQRES 41 A 1323 ASP ASP VAL LYS ALA ILE LYS ASP LEU LEU ASP GLN THR SEQRES 42 A 1323 ASN ASN LEU LEU HIS LYS LEU LYS ILE PHE HIS ILE SER SEQRES 43 A 1323 GLN SER GLU ASP LYS ALA ASN ILE LEU ASP LYS ASP GLU SEQRES 44 A 1323 HIS PHE TYR LEU VAL PHE GLU GLU CYS TYR PHE GLU LEU SEQRES 45 A 1323 ALA ASN ILE VAL PRO LEU TYR ASN LYS ILE ARG ASN TYR SEQRES 46 A 1323 ILE THR GLN LYS PRO TYR SER ASP GLU LYS PHE LYS LEU SEQRES 47 A 1323 ASN PHE GLU ASN SER THR LEU ALA ASN GLY TRP ASP LYS SEQRES 48 A 1323 ASN LYS GLU PRO ASP ASN THR ALA ILE LEU PHE ILE LYS SEQRES 49 A 1323 ASP ASP LYS TYR TYR LEU GLY VAL MET ASN LYS LYS ASN SEQRES 50 A 1323 ASN LYS ILE PHE ASP ASP LYS ALA ILE LYS GLU ASN LYS SEQRES 51 A 1323 GLY GLU GLY TYR LYS LYS ILE VAL TYR LYS LEU LEU PRO SEQRES 52 A 1323 GLY ALA ASN LYS MET LEU PRO LYS VAL PHE PHE SER ALA SEQRES 53 A 1323 LYS SER ILE LYS PHE TYR ASN PRO SER GLU ASP ILE LEU SEQRES 54 A 1323 ARG ILE ARG ASN HIS SER THR HIS THR LYS ASN GLY SER SEQRES 55 A 1323 PRO GLN LYS GLY TYR GLU LYS PHE GLU PHE ASN ILE GLU SEQRES 56 A 1323 ASP CYS ARG LYS PHE ILE ASP PHE TYR LYS GLN SER ILE SEQRES 57 A 1323 SER LYS HIS PRO GLU TRP LYS ASP PHE GLY PHE ARG PHE SEQRES 58 A 1323 SER ASP THR GLN ARG TYR ASN SER ILE ASP GLU PHE TYR SEQRES 59 A 1323 ARG GLU VAL GLU ASN GLN GLY TYR LYS LEU THR PHE GLU SEQRES 60 A 1323 ASN ILE SER GLU SER TYR ILE ASP SER VAL VAL ASN GLN SEQRES 61 A 1323 GLY LYS LEU TYR LEU PHE GLN ILE TYR ASN LYS ASP PHE SEQRES 62 A 1323 SER ALA TYR SER LYS GLY ARG PRO ASN LEU HIS THR LEU SEQRES 63 A 1323 TYR TRP LYS ALA LEU PHE ASP GLU ARG ASN LEU GLN ASP SEQRES 64 A 1323 VAL VAL TYR LYS LEU ASN GLY GLU ALA GLU LEU PHE TYR SEQRES 65 A 1323 ARG LYS GLN SER ILE PRO LYS LYS ILE ILE HIS PRO ALA SEQRES 66 A 1323 LYS GLU ALA ILE ALA ASN LYS ASN LYS ASP ASN PRO LYS SEQRES 67 A 1323 LYS GLU SER VAL PHE GLU TYR ASP LEU ILE LYS ASP LYS SEQRES 68 A 1323 ARG PHE THR GLU ASP LYS PHE PHE PHE HIS CYS PRO ILE SEQRES 69 A 1323 THR ILE ASN PHE LYS SER SER GLY ALA ASN LYS PHE ASN SEQRES 70 A 1323 ASP GLU ILE ASN LEU LEU LEU LYS GLU LYS ALA ASN ASP SEQRES 71 A 1323 VAL HIS ILE LEU SER ILE ASP ARG GLY GLU ARG HIS LEU SEQRES 72 A 1323 ALA TYR TYR THR LEU VAL ASP GLY LYS GLY ASN ILE ILE SEQRES 73 A 1323 LYS GLN ASP THR PHE ASN ILE ILE GLY ASN ASP ARG MET SEQRES 74 A 1323 LYS THR ASN TYR HIS ASP LYS LEU ALA ALA ILE GLU LYS SEQRES 75 A 1323 ASP ARG ASP SER ALA ARG LYS ASP TRP LYS LYS ILE ASN SEQRES 76 A 1323 ASN ILE LYS GLU MET LYS GLU GLY TYR LEU SER GLN VAL SEQRES 77 A 1323 VAL HIS GLU ILE ALA LYS LEU VAL ILE GLU TYR ASN ALA SEQRES 78 A 1323 ILE VAL VAL PHE GLU ASP LEU ASN PHE GLY PHE LYS ARG SEQRES 79 A 1323 GLY ARG PHE LYS VAL GLU LYS GLN VAL TYR GLN LYS LEU SEQRES 80 A 1323 GLU LYS MET LEU ILE GLU LYS LEU ASN TYR LEU VAL PHE SEQRES 81 A 1323 LYS ASP ASN GLU PHE ASP LYS THR GLY GLY VAL LEU ARG SEQRES 82 A 1323 ALA TYR GLN LEU THR ALA PRO PHE GLU THR PHE LYS LYS SEQRES 83 A 1323 MET GLY LYS GLN THR GLY ILE ILE TYR TYR VAL PRO ALA SEQRES 84 A 1323 GLY PHE THR SER LYS ILE CYS PRO VAL THR GLY PHE VAL SEQRES 85 A 1323 ASN GLN LEU TYR PRO LYS TYR GLU SER VAL SER LYS SER SEQRES 86 A 1323 GLN GLU PHE PHE SER LYS PHE ASP LYS ILE CYS TYR ASN SEQRES 87 A 1323 LEU ASP LYS GLY TYR PHE GLU PHE SER PHE ASP TYR LYS SEQRES 88 A 1323 ASN PHE GLY ASP LYS ALA ALA LYS GLY LYS TRP THR ILE SEQRES 89 A 1323 ALA SER PHE GLY SER ARG LEU ILE ASN PHE ARG ASN SER SEQRES 90 A 1323 ASP LYS ASN HIS ASN TRP ASP THR ARG GLU VAL TYR PRO SEQRES 91 A 1323 THR LYS GLU LEU GLU LYS LEU LEU LYS ASP TYR SER ILE SEQRES 92 A 1323 GLU TYR GLY HIS GLY GLU CYS ILE LYS ALA ALA ILE CYS SEQRES 93 A 1323 GLY GLU SER ASP LYS LYS PHE PHE ALA LYS LEU THR SER SEQRES 94 A 1323 VAL LEU ASN THR ILE LEU GLN MET ARG ASN SER LYS THR SEQRES 95 A 1323 GLY THR GLU LEU ASP TYR LEU ILE SER PRO VAL ALA ASP SEQRES 96 A 1323 VAL ASN GLY ASN PHE PHE ASP SER ARG GLN ALA PRO LYS SEQRES 97 A 1323 ASN MET PRO GLN ASP ALA ASP ALA ASN GLY ALA TYR HIS SEQRES 98 A 1323 ILE GLY LEU LYS GLY LEU MET LEU LEU GLY ARG ILE LYS SEQRES 99 A 1323 ASN ASN GLN GLU GLY LYS LYS LEU ASN LEU VAL ILE LYS SEQRES 100 A 1323 ASN GLU GLU TYR PHE GLU PHE VAL GLN ASN ARG ASN ASN SEQRES 101 A 1323 GLY SER GLU PHE GLU LEU GLU ASN LEU TYR PHE GLN GLY SEQRES 102 A 1323 GLU LEU ARG ARG GLN ALA SER ALA LEU GLU SEQRES 1 B 40 A A U U U C U A C U G U U SEQRES 2 B 40 G U A G A U G A G A A G U SEQRES 3 B 40 C A U U U A A U A A G G C SEQRES 4 B 40 C SEQRES 1 C 26 DG DG DC DC DT DT DA DT DT DA DA DA DT SEQRES 2 C 26 DG DA DC DT DT DC DT DC DT DA DA DC DG SEQRES 1 D 12 DC DG DT DT DA DG DA DG DA DA DG DT HET MG B 101 1 HET MG B 102 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG 2(MG 2+) FORMUL 7 HOH *130(H2 O) HELIX 1 AA1 LYS A 26 ARG A 34 1 9 HELIX 2 AA2 GLY A 35 VAL A 69 1 35 HELIX 3 AA3 LEU A 75 LYS A 87 1 13 HELIX 4 AA4 ASP A 91 SER A 116 1 26 HELIX 5 AA5 ASN A 124 ILE A 128 5 5 HELIX 6 AA6 SER A 136 GLN A 144 1 9 HELIX 7 AA7 ASP A 161 SER A 171 1 11 HELIX 8 AA8 TRP A 175 TYR A 178 5 4 HELIX 9 AA9 PHE A 179 TYR A 190 1 12 HELIX 10 AB1 SER A 198 ASP A 205 1 8 HELIX 11 AB2 ASP A 206 ASP A 223 1 18 HELIX 12 AB3 TYR A 231 LEU A 238 5 8 HELIX 13 AB4 GLU A 265 TYR A 272 5 8 HELIX 14 AB5 ASN A 274 GLY A 287 1 14 HELIX 15 AB6 GLY A 299 GLN A 309 1 11 HELIX 16 AB7 THR A 315 LYS A 320 5 6 HELIX 17 AB8 ASP A 344 PHE A 362 1 19 HELIX 18 AB9 GLU A 372 ASP A 379 1 8 HELIX 19 AC1 LEU A 399 PHE A 407 1 9 HELIX 20 AC2 GLU A 414 LYS A 420 1 7 HELIX 21 AC3 TYR A 460 GLU A 464 1 5 HELIX 22 AC4 ASP A 470 ILE A 478 1 9 HELIX 23 AC5 LEU A 479 GLU A 491 1 13 HELIX 24 AC6 ALA A 493 ASN A 498 1 6 HELIX 25 AC7 ALA A 519 LYS A 539 1 21 HELIX 26 AC8 GLU A 566 ALA A 573 1 8 HELIX 27 AC9 ASN A 574 THR A 587 1 14 HELIX 28 AD1 ASP A 610 ASN A 612 5 3 HELIX 29 AD2 LYS A 613 THR A 618 1 6 HELIX 30 AD3 LYS A 635 ASN A 638 5 4 HELIX 31 AD4 ASP A 642 ASN A 649 1 8 HELIX 32 AD5 GLY A 664 PHE A 674 1 11 HELIX 33 AD6 SER A 678 ASN A 683 1 6 HELIX 34 AD7 SER A 685 ASN A 693 1 9 HELIX 35 AD8 ASN A 713 HIS A 731 1 19 HELIX 36 AD9 TRP A 734 GLY A 738 5 5 HELIX 37 AE1 SER A 749 GLY A 761 1 13 HELIX 38 AE2 GLU A 771 GLN A 780 1 10 HELIX 39 AE3 ASN A 790 SER A 794 5 5 HELIX 40 AE4 ASN A 802 LEU A 811 1 10 HELIX 41 AE5 ASP A 813 ASP A 819 1 7 HELIX 42 AE6 ASP A 870 GLU A 875 5 6 HELIX 43 AE7 LYS A 895 LYS A 907 1 13 HELIX 44 AE8 TYR A 953 ASP A 970 1 18 HELIX 45 AE9 ILE A 977 ASN A 1000 1 24 HELIX 46 AF1 VAL A 1023 TYR A 1037 1 15 HELIX 47 AF2 SER A 1105 SER A 1110 1 6 HELIX 48 AF3 TYR A 1169 TYR A 1181 1 13 HELIX 49 AF4 LYS A 1206 LEU A 1215 1 10 HELIX 50 AF5 ASP A 1242 ALA A 1246 5 5 HELIX 51 AF6 ASP A 1253 ASN A 1275 1 23 HELIX 52 AF7 LYS A 1287 ASN A 1297 1 11 SHEET 1 AA1 9 PHE A 596 LEU A 598 0 SHEET 2 AA1 9 GLU A 829 ARG A 833 -1 O LEU A 830 N LEU A 598 SHEET 3 AA1 9 LYS A 877 ILE A 886 -1 O HIS A 881 N GLU A 829 SHEET 4 AA1 9 LEU A 13 PRO A 23 -1 N LEU A 17 O CYS A 882 SHEET 5 AA1 9 LEU A 783 TYR A 789 -1 O TYR A 789 N GLU A 20 SHEET 6 AA1 9 LYS A 627 MET A 633 -1 N VAL A 632 O TYR A 784 SHEET 7 AA1 9 ALA A 619 LYS A 624 -1 N ILE A 620 O GLY A 631 SHEET 8 AA1 9 LYS A 650 LEU A 661 -1 O ILE A 657 N LEU A 621 SHEET 9 AA1 9 TYR A 762 SER A 770 -1 O ILE A 769 N TYR A 654 SHEET 1 AA2 4 PHE A 596 LEU A 598 0 SHEET 2 AA2 4 GLU A 829 ARG A 833 -1 O LEU A 830 N LEU A 598 SHEET 3 AA2 4 LYS A 877 ILE A 886 -1 O HIS A 881 N GLU A 829 SHEET 4 AA2 4 TYR A 822 LEU A 824 -1 N LYS A 823 O THR A 885 SHEET 1 AA3 6 ILE A 935 THR A 940 0 SHEET 2 AA3 6 TYR A 925 VAL A 929 -1 N LEU A 928 O LYS A 937 SHEET 3 AA3 6 HIS A 912 ASP A 917 -1 N ILE A 913 O VAL A 929 SHEET 4 AA3 6 ALA A1001 GLU A1006 1 O ILE A1002 N LEU A 914 SHEET 5 AA3 6 ILE A1074 VAL A1077 1 O VAL A1077 N PHE A1005 SHEET 6 AA3 6 GLN A1070 THR A1071 -1 N THR A1071 O ILE A1074 SHEET 1 AA4 3 ILE A1115 ASN A1118 0 SHEET 2 AA4 3 TYR A1123 PHE A1128 -1 O GLU A1125 N CYS A1116 SHEET 3 AA4 3 TRP A1142 ILE A1144 -1 O ILE A1144 N PHE A1126 CISPEP 1 ILE A 359 ALA A 360 0 -0.55 CISPEP 2 GLN A 507 ASN A 508 0 -12.07 CISPEP 3 PHE A 565 GLU A 566 0 28.84 CISPEP 4 SER A 592 ASP A 593 0 -9.25 CISPEP 5 GLU A 594 LYS A 595 0 -1.78 CISPEP 6 ILE A 841 ILE A 842 0 -18.18 CISPEP 7 VAL A 862 PHE A 863 0 -25.99 CISPEP 8 PHE A 1133 GLY A 1134 0 3.21 CISPEP 9 GLU A 1225 LEU A 1226 0 6.81 SITE 1 AC1 3 ASN A 802 A B -4 G B -3 SITE 1 AC2 2 U B -5 U B -8 CRYST1 85.223 137.652 320.513 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011734 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007265 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003120 0.00000