HEADER OXIDOREDUCTASE 29-NOV-16 5MIQ TITLE CRYSTAL STRUCTURE OF LACTOCOCCUS LACTIS THIOREDOXIN REDUCTASE EXPOSED TITLE 2 TO VISIBLE LIGHT (60 MIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.8.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. CREMORIS; SOURCE 3 ORGANISM_TAXID: 1359; SOURCE 4 GENE: N41_1746, NCDO763_0431; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS THIOREDOXIN REDUCTASE, PHOTOSENSITIVITY, REACTIVE OXYGEN SPECIES, FAD KEYWDS 2 SI-FACE OPEN SPACE, OXYGEN POCKET, FAD-NADP+ COMPLEX, FO-FR KEYWDS 3 CONFORMATIONS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.SKJOLDAGER,M.B.BANG,B.SVENSSON,P.HAGGLUND,P.HARRIS REVDAT 4 17-JAN-24 5MIQ 1 REMARK REVDAT 3 17-JAN-18 5MIQ 1 REMARK REVDAT 2 19-APR-17 5MIQ 1 JRNL REVDAT 1 12-APR-17 5MIQ 0 JRNL AUTH N.SKJOLDAGER,M.BLANNER BANG,M.RYKR,O.BJORNBERG,M.J.DAVIES, JRNL AUTH 2 B.SVENSSON,P.HARRIS,P.HAGGLUND JRNL TITL THE STRUCTURE OF LACTOCOCCUS LACTIS THIOREDOXIN REDUCTASE JRNL TITL 2 REVEALS MOLECULAR FEATURES OF PHOTO-OXIDATIVE DAMAGE. JRNL REF SCI REP V. 7 46282 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28397795 JRNL DOI 10.1038/SREP46282 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 6.3 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 33363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1758 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2347 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 125 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : -0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.636 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5MIQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002517. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97898 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOVEMBER 3, 2014 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35159 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 42.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 1.46100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1F6M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG 1500, 400 MM LI2SO4, 20 MM REMARK 280 HEPES, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.35500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.73000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.73000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.17750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.73000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.73000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.53250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.73000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.73000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 15.17750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.73000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.73000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.53250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 30.35500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 30.35500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 504 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 664 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 GLY A 308 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 237 O HOH A 501 1.71 REMARK 500 O HOH A 655 O HOH A 732 1.82 REMARK 500 O HOH A 600 O HOH A 657 1.88 REMARK 500 O1 PEG A 403 O HOH A 502 1.99 REMARK 500 O ARG A 143 O HOH A 503 2.15 REMARK 500 O HOH A 530 O HOH A 634 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 711 O HOH A 729 6554 1.83 REMARK 500 O HOH A 684 O HOH A 689 3455 1.90 REMARK 500 O HOH A 657 O HOH A 704 8555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 183 CD GLU A 183 OE1 0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 138 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASN A 268 CB - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 144 -1.36 61.03 REMARK 500 ALA A 244 37.98 -144.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 126 GLY A 127 149.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 DBREF1 5MIQ A 1 308 UNP A0A166TWQ7_LACLC DBREF2 5MIQ A A0A166TWQ7 1 308 SEQADV 5MIQ GLY A -18 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIQ SER A -17 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIQ SER A -16 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIQ HIS A -15 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIQ HIS A -14 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIQ HIS A -13 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIQ HIS A -12 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIQ HIS A -11 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIQ HIS A -10 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIQ SER A -9 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIQ SER A -8 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIQ GLY A -7 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIQ LEU A -6 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIQ VAL A -5 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIQ PRO A -4 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIQ ARG A -3 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIQ GLY A -2 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIQ SER A -1 UNP A0A166TWQ EXPRESSION TAG SEQADV 5MIQ HIS A 0 UNP A0A166TWQ EXPRESSION TAG SEQRES 1 A 327 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 327 VAL PRO ARG GLY SER HIS MET THR GLU LYS LYS TYR ASP SEQRES 3 A 327 VAL VAL ILE ILE GLY SER GLY PRO ALA GLY MET THR ALA SEQRES 4 A 327 ALA MET TYR THR ALA ARG SER GLU MET LYS THR LEU LEU SEQRES 5 A 327 LEU GLU ARG GLY VAL PRO GLY GLY GLN MET ASN ASN THR SEQRES 6 A 327 ALA GLU ILE GLU ASN TYR PRO GLY TYR GLU THR ILE MET SEQRES 7 A 327 GLY PRO GLU LEU SER MET LYS MET ALA GLU PRO LEU GLU SEQRES 8 A 327 GLY LEU GLY VAL GLU ASN ALA TYR GLY PHE VAL THR GLY SEQRES 9 A 327 ILE GLU ASP HIS GLY ASP TYR LYS LYS ILE ILE THR GLU SEQRES 10 A 327 ASP ASP GLU PHE ILE THR LYS SER ILE ILE ILE ALA THR SEQRES 11 A 327 GLY ALA ASN HIS ARG LYS LEU GLU ILE PRO GLY GLU GLU SEQRES 12 A 327 GLU TYR GLY ALA ARG GLY VAL SER TYR CYS ALA VAL CYS SEQRES 13 A 327 ASP GLY ALA PHE PHE ARG ASN GLN GLU ILE LEU VAL ILE SEQRES 14 A 327 GLY GLY GLY ASP SER ALA VAL GLU GLU ALA LEU TYR LEU SEQRES 15 A 327 THR ARG PHE GLY GLN SER VAL THR ILE MET HIS ARG ARG SEQRES 16 A 327 ASP LYS LEU ARG ALA GLN GLU ILE ILE GLN GLN ARG ALA SEQRES 17 A 327 PHE LYS GLU GLU LYS ILE ASN PHE ILE TRP ASP SER VAL SEQRES 18 A 327 PRO MET GLU ILE LYS GLY ASP ASP LYS LYS ILE GLN SER SEQRES 19 A 327 VAL VAL TYR LYS ASN VAL LYS THR GLY GLU VAL THR GLU SEQRES 20 A 327 LYS ALA PHE GLY GLY ILE PHE ILE TYR VAL GLY LEU ASP SEQRES 21 A 327 PRO VAL ALA GLU PHE VAL SER ASP LEU GLY ILE THR ASP SEQRES 22 A 327 GLU ALA GLY TRP ILE ILE THR ASP ASP HIS MET ARG THR SEQRES 23 A 327 ASN ILE PRO GLY ILE PHE ALA VAL GLY ASP VAL ARG GLN SEQRES 24 A 327 LYS ASP PHE ARG GLN ILE THR THR ALA VAL GLY ASP GLY SEQRES 25 A 327 ALA GLN ALA ALA GLN GLU ALA TYR LYS PHE VAL VAL GLU SEQRES 26 A 327 LEU GLY HET FAD A 401 53 HET NAP A 402 48 HET PEG A 403 7 HET PEG A 404 7 HET SO4 A 405 5 HET SO4 A 406 5 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 PEG 2(C4 H10 O3) FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 HOH *238(H2 O) HELIX 1 AA1 GLY A 14 SER A 27 1 14 HELIX 2 AA2 GLY A 40 THR A 46 5 7 HELIX 3 AA3 GLY A 60 GLU A 69 1 10 HELIX 4 AA4 CYS A 134 GLY A 139 1 6 HELIX 5 AA5 ALA A 140 ARG A 143 5 4 HELIX 6 AA6 GLY A 153 THR A 164 1 12 HELIX 7 AA7 GLN A 182 GLU A 192 1 11 HELIX 8 AA8 ALA A 244 GLY A 251 5 8 HELIX 9 AA9 GLY A 276 ARG A 279 5 4 HELIX 10 AB1 GLN A 285 GLU A 306 1 22 SHEET 1 AA1 6 GLU A 77 TYR A 80 0 SHEET 2 AA1 6 THR A 31 GLU A 35 1 N LEU A 33 O GLU A 77 SHEET 3 AA1 6 TYR A 6 ILE A 11 1 N ILE A 10 O LEU A 32 SHEET 4 AA1 6 GLU A 101 ILE A 109 1 O LYS A 105 N TYR A 6 SHEET 5 AA1 6 LYS A 93 THR A 97 -1 N ILE A 95 O PHE A 102 SHEET 6 AA1 6 VAL A 83 ASP A 88 -1 N THR A 84 O ILE A 96 SHEET 1 AA2 5 GLU A 77 TYR A 80 0 SHEET 2 AA2 5 THR A 31 GLU A 35 1 N LEU A 33 O GLU A 77 SHEET 3 AA2 5 TYR A 6 ILE A 11 1 N ILE A 10 O LEU A 32 SHEET 4 AA2 5 GLU A 101 ILE A 109 1 O LYS A 105 N TYR A 6 SHEET 5 AA2 5 ILE A 272 ALA A 274 1 O PHE A 273 N ILE A 107 SHEET 1 AA3 2 GLU A 48 ILE A 49 0 SHEET 2 AA3 2 ILE A 58 MET A 59 -1 O ILE A 58 N ILE A 49 SHEET 1 AA4 2 ALA A 113 HIS A 115 0 SHEET 2 AA4 2 LEU A 240 PRO A 242 -1 O ASP A 241 N ASN A 114 SHEET 1 AA5 5 VAL A 131 SER A 132 0 SHEET 2 AA5 5 GLY A 233 ILE A 236 1 O ILE A 234 N SER A 132 SHEET 3 AA5 5 GLU A 146 ILE A 150 1 N ILE A 150 O PHE A 235 SHEET 4 AA5 5 SER A 169 MET A 173 1 O THR A 171 N VAL A 149 SHEET 5 AA5 5 ILE A 195 ILE A 198 1 O ILE A 198 N ILE A 172 SHEET 1 AA6 3 SER A 201 GLY A 208 0 SHEET 2 AA6 3 ILE A 213 ASN A 220 -1 O VAL A 217 N MET A 204 SHEET 3 AA6 3 VAL A 226 ALA A 230 -1 O THR A 227 N TYR A 218 SSBOND 1 CYS A 134 CYS A 137 1555 1555 2.11 SITE 1 AC1 38 GLY A 12 GLY A 14 PRO A 15 ALA A 16 SITE 2 AC1 38 GLU A 35 ARG A 36 GLY A 41 GLN A 42 SITE 3 AC1 38 THR A 46 ASN A 51 GLY A 81 PHE A 82 SITE 4 AC1 38 VAL A 83 ALA A 110 THR A 111 GLY A 112 SITE 5 AC1 38 SER A 155 GLU A 159 VAL A 243 GLY A 276 SITE 6 AC1 38 ASP A 277 ARG A 284 GLN A 285 ILE A 286 SITE 7 AC1 38 NAP A 402 HOH A 519 HOH A 524 HOH A 555 SITE 8 AC1 38 HOH A 565 HOH A 569 HOH A 570 HOH A 574 SITE 9 AC1 38 HOH A 577 HOH A 588 HOH A 598 HOH A 620 SITE 10 AC1 38 HOH A 652 HOH A 717 SITE 1 AC2 33 ASN A 51 ILE A 150 GLY A 151 GLY A 152 SITE 2 AC2 33 GLY A 153 ASP A 154 SER A 155 GLU A 158 SITE 3 AC2 33 MET A 173 HIS A 174 ARG A 175 ARG A 176 SITE 4 AC2 33 ARG A 180 PRO A 203 TYR A 237 VAL A 238 SITE 5 AC2 33 GLY A 239 LEU A 240 ARG A 284 GLN A 285 SITE 6 AC2 33 FAD A 401 HOH A 505 HOH A 524 HOH A 531 SITE 7 AC2 33 HOH A 534 HOH A 549 HOH A 559 HOH A 580 SITE 8 AC2 33 HOH A 595 HOH A 614 HOH A 637 HOH A 649 SITE 9 AC2 33 HOH A 661 SITE 1 AC3 5 SER A 13 PRO A 39 ASN A 78 HOH A 502 SITE 2 AC3 5 HOH A 506 SITE 1 AC4 2 ARG A 266 THR A 267 SITE 1 AC5 6 PRO A 121 GLY A 122 GLU A 123 GLU A 124 SITE 2 AC5 6 GLU A 125 HOH A 518 SITE 1 AC6 3 ARG A 116 ARG A 175 HOH A 642 CRYST1 121.460 121.460 60.710 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008233 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008233 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016472 0.00000