data_5MIX # _entry.id 5MIX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.284 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5MIX WWPDB D_1200002520 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5MIX _pdbx_database_status.recvd_initial_deposition_date 2016-11-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Klingl, S.' 1 'Egerer-Sieber, C.' 2 'Schmid, B.' 3 'Muller, Y.A.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Mol. Biol.' _citation.journal_id_ASTM JMOBAK _citation.journal_id_CSD 0070 _citation.journal_id_ISSN 1089-8638 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 429 _citation.language ? _citation.page_first 1227 _citation.page_last 1243 _citation.title 'Crystal Structure of the Extracellular Domain of the Human Dendritic Cell Surface Marker CD83.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmb.2017.03.009 _citation.pdbx_database_id_PubMed 28315353 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Heilingloh, C.S.' 1 primary 'Klingl, S.' 2 primary 'Egerer-Sieber, C.' 3 primary 'Schmid, B.' 4 primary 'Weiler, S.' 5 primary 'Muhl-Zurbes, P.' 6 primary 'Hofmann, J.' 7 primary 'Stump, J.D.' 8 primary 'Sticht, H.' 9 primary 'Kummer, M.' 10 primary 'Steinkasserer, A.' 11 primary 'Muller, Y.A.' 12 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5MIX _cell.details ? _cell.formula_units_Z ? _cell.length_a 62.942 _cell.length_a_esd ? _cell.length_b 62.942 _cell.length_b_esd ? _cell.length_c 40.064 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MIX _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CD83 antigen' 12766.979 1 ? 'C27S, C100S, C129S' ? ;The first four residues (GSPG) are non-native residues of the linker which remains after the GST-tag was cleaved off. The first three and last four residues as well as the central region were not visible in the electron density maps. ; 2 water nat water 18.015 31 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'hCD83,B-cell activation protein,Cell surface protein HB15' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSPGTPEVKVASSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIR NTTSSNSGTYRCTLQDPDGQRNLSGKVILRVTGSPA ; _entity_poly.pdbx_seq_one_letter_code_can ;GSPGTPEVKVASSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIR NTTSSNSGTYRCTLQDPDGQRNLSGKVILRVTGSPA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 GLY n 1 5 THR n 1 6 PRO n 1 7 GLU n 1 8 VAL n 1 9 LYS n 1 10 VAL n 1 11 ALA n 1 12 SER n 1 13 SER n 1 14 GLU n 1 15 ASP n 1 16 VAL n 1 17 ASP n 1 18 LEU n 1 19 PRO n 1 20 CYS n 1 21 THR n 1 22 ALA n 1 23 PRO n 1 24 TRP n 1 25 ASP n 1 26 PRO n 1 27 GLN n 1 28 VAL n 1 29 PRO n 1 30 TYR n 1 31 THR n 1 32 VAL n 1 33 SER n 1 34 TRP n 1 35 VAL n 1 36 LYS n 1 37 LEU n 1 38 LEU n 1 39 GLU n 1 40 GLY n 1 41 GLY n 1 42 GLU n 1 43 GLU n 1 44 ARG n 1 45 MET n 1 46 GLU n 1 47 THR n 1 48 PRO n 1 49 GLN n 1 50 GLU n 1 51 ASP n 1 52 HIS n 1 53 LEU n 1 54 ARG n 1 55 GLY n 1 56 GLN n 1 57 HIS n 1 58 TYR n 1 59 HIS n 1 60 GLN n 1 61 LYS n 1 62 GLY n 1 63 GLN n 1 64 ASN n 1 65 GLY n 1 66 SER n 1 67 PHE n 1 68 ASP n 1 69 ALA n 1 70 PRO n 1 71 ASN n 1 72 GLU n 1 73 ARG n 1 74 PRO n 1 75 TYR n 1 76 SER n 1 77 LEU n 1 78 LYS n 1 79 ILE n 1 80 ARG n 1 81 ASN n 1 82 THR n 1 83 THR n 1 84 SER n 1 85 SER n 1 86 ASN n 1 87 SER n 1 88 GLY n 1 89 THR n 1 90 TYR n 1 91 ARG n 1 92 CYS n 1 93 THR n 1 94 LEU n 1 95 GLN n 1 96 ASP n 1 97 PRO n 1 98 ASP n 1 99 GLY n 1 100 GLN n 1 101 ARG n 1 102 ASN n 1 103 LEU n 1 104 SER n 1 105 GLY n 1 106 LYS n 1 107 VAL n 1 108 ILE n 1 109 LEU n 1 110 ARG n 1 111 VAL n 1 112 THR n 1 113 GLY n 1 114 SER n 1 115 PRO n 1 116 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 116 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CD83 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell 'Dendritic cells' _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant 'Gold pLysS' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-2T _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CD83_HUMAN _struct_ref.pdbx_db_accession Q01151 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRNTTS CNSGTYRCTLQDPDGQRNLSGKVILRVTGCPA ; _struct_ref.pdbx_align_begin 20 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5MIX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 116 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q01151 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 131 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 20 _struct_ref_seq.pdbx_auth_seq_align_end 131 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5MIX GLY A 1 ? UNP Q01151 ? ? 'expression tag' 16 1 1 5MIX SER A 2 ? UNP Q01151 ? ? 'expression tag' 17 2 1 5MIX PRO A 3 ? UNP Q01151 ? ? 'expression tag' 18 3 1 5MIX GLY A 4 ? UNP Q01151 ? ? 'expression tag' 19 4 1 5MIX SER A 12 ? UNP Q01151 CYS 27 'engineered mutation' 27 5 1 5MIX SER A 85 ? UNP Q01151 CYS 100 'engineered mutation' 100 6 1 5MIX SER A 114 ? UNP Q01151 CYS 129 'engineered mutation' 129 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5MIX _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.79 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 31.45 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.4 microliter protein (39 mg/ml in 50 mM Tris-HCl (pH 8.0) buffer) were mixed with 0.2 microliter reservoir solution (1 M ammonium sulfate, 0.1 M HEPES (pH 7.0), 0.5% w/v polyethylene glycol (PEG) 8000) and equilibrated against 70 microliter of reservoir solution ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-05-30 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.918409 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.918409 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_synchrotron_site BESSY # _reflns.B_iso_Wilson_estimate 38.5 _reflns.entry_id 5MIX _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.70 _reflns.d_resolution_low 40.06 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10348 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.9 _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 23.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.80 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.6 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99.9 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.851 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 9.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 44.6 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5MIX _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.701 _refine.ls_d_res_low 40.06 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10347 _refine.ls_number_reflns_R_free 1026 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.92 _refine.ls_percent_reflns_R_free 9.92 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1912 _refine.ls_R_factor_R_free 0.2164 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1884 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.38 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.13 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.22 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 597 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 31 _refine_hist.number_atoms_total 628 _refine_hist.d_res_high 1.701 _refine_hist.d_res_low 40.06 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 663 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.088 ? 914 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 12.682 ? 252 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.049 ? 106 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 121 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.7006 1.7903 . . 144 1290 100.00 . . . 0.3218 . 0.2786 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7903 1.9025 . . 146 1319 100.00 . . . 0.2345 . 0.2143 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9025 2.0494 . . 146 1307 100.00 . . . 0.2651 . 0.1855 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0494 2.2556 . . 147 1333 100.00 . . . 0.1963 . 0.1930 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2556 2.5819 . . 144 1316 100.00 . . . 0.2336 . 0.2007 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5819 3.2527 . . 147 1349 100.00 . . . 0.2404 . 0.2117 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2527 40.0751 . . 152 1407 100.00 . . . 0.1925 . 0.1681 . . . . . . . . . . # _struct.entry_id 5MIX _struct.title 'Extracellular domain of human CD83 - trigonal crystal form' _struct.pdbx_descriptor 'CD83 antigen' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5MIX _struct_keywords.text 'Dendritic cell, receptor, immunoglobulin, immune system' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 83 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id SER _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 87 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 98 _struct_conf.end_auth_comp_id SER _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 102 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 20 SG A ? ? 1_555 A CYS 92 SG A ? A CYS 35 A CYS 107 1_555 ? ? ? ? ? ? ? 2.039 ? disulf2 disulf ? ? A CYS 20 SG B ? ? 1_555 A CYS 92 SG B ? A CYS 35 A CYS 107 1_555 ? ? ? ? ? ? ? 2.047 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU A 7 ? VAL A 10 ? GLU A 22 VAL A 25 AA1 2 ASN A 102 ? VAL A 111 ? ASN A 117 VAL A 126 AA1 3 GLY A 88 ? GLN A 95 ? GLY A 103 GLN A 110 AA1 4 THR A 31 ? LEU A 37 ? THR A 46 LEU A 52 AA2 1 VAL A 16 ? LEU A 18 ? VAL A 31 LEU A 33 AA2 2 LEU A 77 ? ILE A 79 ? LEU A 92 ILE A 94 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 8 ? N VAL A 23 O ARG A 110 ? O ARG A 125 AA1 2 3 O LEU A 103 ? O LEU A 118 N LEU A 94 ? N LEU A 109 AA1 3 4 O GLN A 95 ? O GLN A 110 N THR A 31 ? N THR A 46 AA2 1 2 N VAL A 16 ? N VAL A 31 O ILE A 79 ? O ILE A 94 # _atom_sites.entry_id 5MIX _atom_sites.fract_transf_matrix[1][1] 0.015888 _atom_sites.fract_transf_matrix[1][2] 0.009173 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018345 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024960 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 16 ? ? ? A . n A 1 2 SER 2 17 ? ? ? A . n A 1 3 PRO 3 18 ? ? ? A . n A 1 4 GLY 4 19 19 GLY GLY A . n A 1 5 THR 5 20 20 THR THR A . n A 1 6 PRO 6 21 21 PRO PRO A . n A 1 7 GLU 7 22 22 GLU GLU A . n A 1 8 VAL 8 23 23 VAL VAL A . n A 1 9 LYS 9 24 24 LYS LYS A . n A 1 10 VAL 10 25 25 VAL VAL A . n A 1 11 ALA 11 26 26 ALA ALA A . n A 1 12 SER 12 27 27 SER SER A . n A 1 13 SER 13 28 28 SER SER A . n A 1 14 GLU 14 29 29 GLU GLU A . n A 1 15 ASP 15 30 30 ASP ASP A . n A 1 16 VAL 16 31 31 VAL VAL A . n A 1 17 ASP 17 32 32 ASP ASP A . n A 1 18 LEU 18 33 33 LEU LEU A . n A 1 19 PRO 19 34 34 PRO PRO A . n A 1 20 CYS 20 35 35 CYS CYS A . n A 1 21 THR 21 36 36 THR THR A . n A 1 22 ALA 22 37 37 ALA ALA A . n A 1 23 PRO 23 38 38 PRO PRO A . n A 1 24 TRP 24 39 39 TRP TRP A . n A 1 25 ASP 25 40 40 ASP ASP A . n A 1 26 PRO 26 41 41 PRO PRO A . n A 1 27 GLN 27 42 42 GLN GLN A . n A 1 28 VAL 28 43 43 VAL VAL A . n A 1 29 PRO 29 44 44 PRO PRO A . n A 1 30 TYR 30 45 45 TYR TYR A . n A 1 31 THR 31 46 46 THR THR A . n A 1 32 VAL 32 47 47 VAL VAL A . n A 1 33 SER 33 48 48 SER SER A . n A 1 34 TRP 34 49 49 TRP TRP A . n A 1 35 VAL 35 50 50 VAL VAL A . n A 1 36 LYS 36 51 51 LYS LYS A . n A 1 37 LEU 37 52 52 LEU LEU A . n A 1 38 LEU 38 53 53 LEU LEU A . n A 1 39 GLU 39 54 54 GLU GLU A . n A 1 40 GLY 40 55 ? ? ? A . n A 1 41 GLY 41 56 ? ? ? A . n A 1 42 GLU 42 57 ? ? ? A . n A 1 43 GLU 43 58 ? ? ? A . n A 1 44 ARG 44 59 ? ? ? A . n A 1 45 MET 45 60 ? ? ? A . n A 1 46 GLU 46 61 ? ? ? A . n A 1 47 THR 47 62 ? ? ? A . n A 1 48 PRO 48 63 ? ? ? A . n A 1 49 GLN 49 64 ? ? ? A . n A 1 50 GLU 50 65 ? ? ? A . n A 1 51 ASP 51 66 ? ? ? A . n A 1 52 HIS 52 67 ? ? ? A . n A 1 53 LEU 53 68 ? ? ? A . n A 1 54 ARG 54 69 ? ? ? A . n A 1 55 GLY 55 70 ? ? ? A . n A 1 56 GLN 56 71 ? ? ? A . n A 1 57 HIS 57 72 ? ? ? A . n A 1 58 TYR 58 73 ? ? ? A . n A 1 59 HIS 59 74 ? ? ? A . n A 1 60 GLN 60 75 ? ? ? A . n A 1 61 LYS 61 76 ? ? ? A . n A 1 62 GLY 62 77 ? ? ? A . n A 1 63 GLN 63 78 ? ? ? A . n A 1 64 ASN 64 79 ? ? ? A . n A 1 65 GLY 65 80 ? ? ? A . n A 1 66 SER 66 81 ? ? ? A . n A 1 67 PHE 67 82 ? ? ? A . n A 1 68 ASP 68 83 ? ? ? A . n A 1 69 ALA 69 84 ? ? ? A . n A 1 70 PRO 70 85 ? ? ? A . n A 1 71 ASN 71 86 ? ? ? A . n A 1 72 GLU 72 87 87 GLU GLU A . n A 1 73 ARG 73 88 88 ARG ARG A . n A 1 74 PRO 74 89 89 PRO PRO A . n A 1 75 TYR 75 90 90 TYR TYR A . n A 1 76 SER 76 91 91 SER SER A . n A 1 77 LEU 77 92 92 LEU LEU A . n A 1 78 LYS 78 93 93 LYS LYS A . n A 1 79 ILE 79 94 94 ILE ILE A . n A 1 80 ARG 80 95 95 ARG ARG A . n A 1 81 ASN 81 96 96 ASN ASN A . n A 1 82 THR 82 97 97 THR THR A . n A 1 83 THR 83 98 98 THR THR A . n A 1 84 SER 84 99 99 SER SER A . n A 1 85 SER 85 100 100 SER SER A . n A 1 86 ASN 86 101 101 ASN ASN A . n A 1 87 SER 87 102 102 SER SER A . n A 1 88 GLY 88 103 103 GLY GLY A . n A 1 89 THR 89 104 104 THR THR A . n A 1 90 TYR 90 105 105 TYR TYR A . n A 1 91 ARG 91 106 106 ARG ARG A . n A 1 92 CYS 92 107 107 CYS CYS A . n A 1 93 THR 93 108 108 THR THR A . n A 1 94 LEU 94 109 109 LEU LEU A . n A 1 95 GLN 95 110 110 GLN GLN A . n A 1 96 ASP 96 111 111 ASP ASP A . n A 1 97 PRO 97 112 112 PRO PRO A . n A 1 98 ASP 98 113 113 ASP ASP A . n A 1 99 GLY 99 114 114 GLY GLY A . n A 1 100 GLN 100 115 115 GLN GLN A . n A 1 101 ARG 101 116 116 ARG ARG A . n A 1 102 ASN 102 117 117 ASN ASN A . n A 1 103 LEU 103 118 118 LEU LEU A . n A 1 104 SER 104 119 119 SER SER A . n A 1 105 GLY 105 120 120 GLY GLY A . n A 1 106 LYS 106 121 121 LYS LYS A . n A 1 107 VAL 107 122 122 VAL VAL A . n A 1 108 ILE 108 123 123 ILE ILE A . n A 1 109 LEU 109 124 124 LEU LEU A . n A 1 110 ARG 110 125 125 ARG ARG A . n A 1 111 VAL 111 126 126 VAL VAL A . n A 1 112 THR 112 127 127 THR THR A . n A 1 113 GLY 113 128 ? ? ? A . n A 1 114 SER 114 129 ? ? ? A . n A 1 115 PRO 115 130 ? ? ? A . n A 1 116 ALA 116 131 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 29 HOH HOH A . B 2 HOH 2 202 4 HOH HOH A . B 2 HOH 3 203 14 HOH HOH A . B 2 HOH 4 204 3 HOH HOH A . B 2 HOH 5 205 12 HOH HOH A . B 2 HOH 6 206 22 HOH HOH A . B 2 HOH 7 207 8 HOH HOH A . B 2 HOH 8 208 9 HOH HOH A . B 2 HOH 9 209 1 HOH HOH A . B 2 HOH 10 210 11 HOH HOH A . B 2 HOH 11 211 21 HOH HOH A . B 2 HOH 12 212 16 HOH HOH A . B 2 HOH 13 213 7 HOH HOH A . B 2 HOH 14 214 18 HOH HOH A . B 2 HOH 15 215 26 HOH HOH A . B 2 HOH 16 216 20 HOH HOH A . B 2 HOH 17 217 10 HOH HOH A . B 2 HOH 18 218 17 HOH HOH A . B 2 HOH 19 219 13 HOH HOH A . B 2 HOH 20 220 6 HOH HOH A . B 2 HOH 21 221 23 HOH HOH A . B 2 HOH 22 222 2 HOH HOH A . B 2 HOH 23 223 27 HOH HOH A . B 2 HOH 24 224 5 HOH HOH A . B 2 HOH 25 225 31 HOH HOH A . B 2 HOH 26 226 15 HOH HOH A . B 2 HOH 27 227 28 HOH HOH A . B 2 HOH 28 228 30 HOH HOH A . B 2 HOH 29 229 19 HOH HOH A . B 2 HOH 30 230 24 HOH HOH A . B 2 HOH 31 231 25 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 5040 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-03-29 2 'Structure model' 1 1 2017-04-26 3 'Structure model' 1 2 2017-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category pdbx_audit_support # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_pdbx_audit_support.funding_organization' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 91.7960 83.1646 58.0915 0.3775 0.5567 0.3117 0.0767 -0.0129 -0.0219 4.9805 3.7532 0.7719 -3.2696 0.2631 0.8969 -0.2623 -2.2640 0.9623 -0.1892 -0.1242 0.3508 -0.8455 -2.2895 0.3451 'X-RAY DIFFRACTION' 2 ? refined 90.3049 70.6790 54.8268 0.3542 0.2715 0.8779 -0.0882 -0.0936 0.0597 1.2655 4.8791 6.1948 2.0516 0.9490 -1.3745 -0.1144 -0.7926 -1.8421 0.3387 0.6052 0.3447 0.3446 -0.6172 -0.3568 'X-RAY DIFFRACTION' 3 ? refined 96.7841 75.5873 49.6133 0.3588 0.3435 0.3523 0.0109 -0.0800 -0.0619 9.0596 3.5764 6.8041 5.3011 -2.5149 -1.8907 -0.3498 0.7888 -1.0635 -1.5850 0.4434 -0.5932 0.5499 -0.1007 -0.0686 'X-RAY DIFFRACTION' 4 ? refined 105.9394 89.3444 43.8169 0.5921 0.4706 0.3381 -0.0197 0.0825 0.0172 5.0475 7.5151 5.3031 -2.7898 -4.7403 3.2984 0.0977 0.7167 0.4581 -0.8002 -0.0549 0.0458 -0.5068 -0.3868 -0.0137 'X-RAY DIFFRACTION' 5 ? refined 105.2156 78.9355 57.6473 0.2103 0.2553 0.2015 0.0199 0.0347 -0.0244 8.6365 8.0838 1.7446 -0.7156 0.2303 -0.2836 -0.0865 0.0015 0.0423 -0.0019 0.1735 -0.0444 -0.2217 -0.0718 -0.1122 'X-RAY DIFFRACTION' 6 ? refined 100.8726 78.4348 46.2961 0.4819 0.4256 0.2086 0.0210 -0.0171 -0.0564 9.4370 4.0413 5.5039 3.8303 -1.7807 -3.7281 -0.3985 1.2694 -0.7416 -1.4446 0.6545 -0.5690 0.0564 -0.5835 -0.1720 'X-RAY DIFFRACTION' 7 ? refined 97.6189 66.1415 54.5096 0.6604 0.3701 0.7681 0.0239 -0.0505 -0.0034 5.1537 8.9273 2.8945 1.4737 -3.7077 -0.1627 -0.5979 0.0333 -1.9754 -1.0073 -0.0304 0.0954 1.4184 0.6242 0.3916 'X-RAY DIFFRACTION' 8 ? refined 106.5506 83.6024 52.9031 0.2835 0.2988 0.2446 0.0362 0.0708 -0.0073 6.7291 6.4826 6.4420 3.2858 -3.6801 -3.6954 0.3834 -0.1933 -0.0826 -0.0381 -0.3727 -0.7463 -0.3556 0.6084 -0.0197 'X-RAY DIFFRACTION' 9 ? refined 106.4675 89.0013 53.4173 0.2720 0.2807 0.3194 0.0296 0.0490 -0.0041 3.6707 3.9815 7.7463 1.5224 -5.6039 -3.0082 0.4857 -0.1506 -0.3372 0.1035 -0.2240 -0.7909 -0.3646 0.4999 -0.2976 'X-RAY DIFFRACTION' 10 ? refined 91.6302 72.7873 58.8438 0.4680 0.4834 0.4588 0.0149 0.0117 0.0777 2.3764 4.5362 5.3838 1.8735 2.4222 4.8314 -0.1122 -0.9525 -0.8415 1.1134 -0.5254 1.6227 0.5544 -2.0150 0.1432 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(chain A and resid 19:22)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(chain A and resid 23:27)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(chain A and resid 28:36)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(chain A and resid 37:47)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(chain A and resid 48:87)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(chain A and resid 88:94)' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? '(chain A and resid 95:100)' 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? '(chain A and resid 101:114)' 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? '(chain A and resid 115:123)' 'X-RAY DIFFRACTION' 10 10 ? ? ? ? ? ? ? ? ? '(chain A and resid 124:127)' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? MxCuBE ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 28 ? ? 72.85 -5.76 2 1 SER A 28 ? ? 72.46 -5.76 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 87 ? CG ? A GLU 72 CG 2 1 Y 1 A GLU 87 ? CD ? A GLU 72 CD 3 1 Y 1 A GLU 87 ? OE1 ? A GLU 72 OE1 4 1 Y 1 A GLU 87 ? OE2 ? A GLU 72 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 16 ? A GLY 1 2 1 Y 1 A SER 17 ? A SER 2 3 1 Y 1 A PRO 18 ? A PRO 3 4 1 Y 1 A GLY 55 ? A GLY 40 5 1 Y 1 A GLY 56 ? A GLY 41 6 1 Y 1 A GLU 57 ? A GLU 42 7 1 Y 1 A GLU 58 ? A GLU 43 8 1 Y 1 A ARG 59 ? A ARG 44 9 1 Y 1 A MET 60 ? A MET 45 10 1 Y 1 A GLU 61 ? A GLU 46 11 1 Y 1 A THR 62 ? A THR 47 12 1 Y 1 A PRO 63 ? A PRO 48 13 1 Y 1 A GLN 64 ? A GLN 49 14 1 Y 1 A GLU 65 ? A GLU 50 15 1 Y 1 A ASP 66 ? A ASP 51 16 1 Y 1 A HIS 67 ? A HIS 52 17 1 Y 1 A LEU 68 ? A LEU 53 18 1 Y 1 A ARG 69 ? A ARG 54 19 1 Y 1 A GLY 70 ? A GLY 55 20 1 Y 1 A GLN 71 ? A GLN 56 21 1 Y 1 A HIS 72 ? A HIS 57 22 1 Y 1 A TYR 73 ? A TYR 58 23 1 Y 1 A HIS 74 ? A HIS 59 24 1 Y 1 A GLN 75 ? A GLN 60 25 1 Y 1 A LYS 76 ? A LYS 61 26 1 Y 1 A GLY 77 ? A GLY 62 27 1 Y 1 A GLN 78 ? A GLN 63 28 1 Y 1 A ASN 79 ? A ASN 64 29 1 Y 1 A GLY 80 ? A GLY 65 30 1 Y 1 A SER 81 ? A SER 66 31 1 Y 1 A PHE 82 ? A PHE 67 32 1 Y 1 A ASP 83 ? A ASP 68 33 1 Y 1 A ALA 84 ? A ALA 69 34 1 Y 1 A PRO 85 ? A PRO 70 35 1 Y 1 A ASN 86 ? A ASN 71 36 1 Y 1 A GLY 128 ? A GLY 113 37 1 Y 1 A SER 129 ? A SER 114 38 1 Y 1 A PRO 130 ? A PRO 115 39 1 Y 1 A ALA 131 ? A ALA 116 # _pdbx_audit_support.funding_organization 'German Research Foundation' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number SFB796 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #