data_5MJ2 # _entry.id 5MJ2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5MJ2 WWPDB D_1200002541 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB '5MIX is the same protein, but a different crystal form (space group P 3 2 1)' 5MIX unspecified PDB '5MJ0 is the same protein, but a different crystal form (space group I 4_1 3 2)' 5MJ0 unspecified PDB '5MJ1 is the same protein in the same space group, but before UV-RIP experiment' 5MJ1 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5MJ2 _pdbx_database_status.recvd_initial_deposition_date 2016-11-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Klingl, S.' 1 'Egerer-Sieber, C.' 2 'Schmid, B.' 3 'Weiler, S.' 4 'Muller, Y.A.' 5 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Mol. Biol.' _citation.journal_id_ASTM JMOBAK _citation.journal_id_CSD 0070 _citation.journal_id_ISSN 1089-8638 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 429 _citation.language ? _citation.page_first 1227 _citation.page_last 1243 _citation.title 'Crystal Structure of the Extracellular Domain of the Human Dendritic Cell Surface Marker CD83.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmb.2017.03.009 _citation.pdbx_database_id_PubMed 28315353 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Heilingloh, C.S.' 1 primary 'Klingl, S.' 2 primary 'Egerer-Sieber, C.' 3 primary 'Schmid, B.' 4 primary 'Weiler, S.' 5 primary 'Muhl-Zurbes, P.' 6 primary 'Hofmann, J.' 7 primary 'Stump, J.D.' 8 primary 'Sticht, H.' 9 primary 'Kummer, M.' 10 primary 'Steinkasserer, A.' 11 primary 'Muller, Y.A.' 12 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5MJ2 _cell.details ? _cell.formula_units_Z ? _cell.length_a 62.978 _cell.length_a_esd ? _cell.length_b 62.978 _cell.length_b_esd ? _cell.length_c 135.628 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5MJ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CD83 antigen' 12766.979 1 ? 'C27S, C100S, C129S' ? ;The first four residues (GSPG) are non-native residues of the linker which remains after the GST-tag was cleaved off. The third residue (P) was modeled as alanine due to missing electron density. The first and last two residues as well as the central region were not visible in the electron density maps. ; 2 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 3 water nat water 18.015 42 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'hCD83,B-cell activation protein,Cell surface protein HB15' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSPGTPEVKVASSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIR NTTSSNSGTYRCTLQDPDGQRNLSGKVILRVTGSPA ; _entity_poly.pdbx_seq_one_letter_code_can ;GSPGTPEVKVASSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIR NTTSSNSGTYRCTLQDPDGQRNLSGKVILRVTGSPA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 GLY n 1 5 THR n 1 6 PRO n 1 7 GLU n 1 8 VAL n 1 9 LYS n 1 10 VAL n 1 11 ALA n 1 12 SER n 1 13 SER n 1 14 GLU n 1 15 ASP n 1 16 VAL n 1 17 ASP n 1 18 LEU n 1 19 PRO n 1 20 CYS n 1 21 THR n 1 22 ALA n 1 23 PRO n 1 24 TRP n 1 25 ASP n 1 26 PRO n 1 27 GLN n 1 28 VAL n 1 29 PRO n 1 30 TYR n 1 31 THR n 1 32 VAL n 1 33 SER n 1 34 TRP n 1 35 VAL n 1 36 LYS n 1 37 LEU n 1 38 LEU n 1 39 GLU n 1 40 GLY n 1 41 GLY n 1 42 GLU n 1 43 GLU n 1 44 ARG n 1 45 MET n 1 46 GLU n 1 47 THR n 1 48 PRO n 1 49 GLN n 1 50 GLU n 1 51 ASP n 1 52 HIS n 1 53 LEU n 1 54 ARG n 1 55 GLY n 1 56 GLN n 1 57 HIS n 1 58 TYR n 1 59 HIS n 1 60 GLN n 1 61 LYS n 1 62 GLY n 1 63 GLN n 1 64 ASN n 1 65 GLY n 1 66 SER n 1 67 PHE n 1 68 ASP n 1 69 ALA n 1 70 PRO n 1 71 ASN n 1 72 GLU n 1 73 ARG n 1 74 PRO n 1 75 TYR n 1 76 SER n 1 77 LEU n 1 78 LYS n 1 79 ILE n 1 80 ARG n 1 81 ASN n 1 82 THR n 1 83 THR n 1 84 SER n 1 85 SER n 1 86 ASN n 1 87 SER n 1 88 GLY n 1 89 THR n 1 90 TYR n 1 91 ARG n 1 92 CYS n 1 93 THR n 1 94 LEU n 1 95 GLN n 1 96 ASP n 1 97 PRO n 1 98 ASP n 1 99 GLY n 1 100 GLN n 1 101 ARG n 1 102 ASN n 1 103 LEU n 1 104 SER n 1 105 GLY n 1 106 LYS n 1 107 VAL n 1 108 ILE n 1 109 LEU n 1 110 ARG n 1 111 VAL n 1 112 THR n 1 113 GLY n 1 114 SER n 1 115 PRO n 1 116 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 116 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CD83 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell 'Dendritic cells' _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ; Escherichia coli 'BL21-Gold(DE3)pLysS AG' ; _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 866768 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-2T _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CD83_HUMAN _struct_ref.pdbx_db_accession Q01151 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;APATPEVKVACSEDVDLPCTAPWDPQVPYTVSWVKLLEGGEERMETPQEDHLRGQHYHQKGQNGSFDAPNERPYSLKIRN TTSCNSGTYRCTLQDPDGQRNLSGKVILRVTGCPA ; _struct_ref.pdbx_align_begin 17 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5MJ2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 116 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q01151 _struct_ref_seq.db_align_beg 17 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 131 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 17 _struct_ref_seq.pdbx_auth_seq_align_end 131 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5MJ2 GLY A 1 ? UNP Q01151 ? ? 'expression tag' 16 1 1 5MJ2 SER A 2 ? UNP Q01151 ALA 17 'expression tag' 17 2 1 5MJ2 GLY A 4 ? UNP Q01151 ALA 19 'expression tag' 19 3 1 5MJ2 SER A 12 ? UNP Q01151 CYS 27 conflict 27 4 1 5MJ2 SER A 85 ? UNP Q01151 CYS 100 conflict 100 5 1 5MJ2 SER A 114 ? UNP Q01151 CYS 129 conflict 129 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5MJ2 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.03 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 39.33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.2 microliter protein (39 mg/ml in ultrapure water) and 0.4 microliter reservoir solution (0.2 M DL-malic acid (pH 7.0), 20% w/v PEG 3350) were mixed and equilibrated against 70 microliter of reservoir solution Crystals appeared after ~13 months ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-03-27 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.800042 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.800042 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_synchrotron_site BESSY # _reflns.B_iso_Wilson_estimate 42.7 _reflns.entry_id 5MJ2 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.98 _reflns.d_resolution_low 45.21 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14030 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.4 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 22.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.98 _reflns_shell.d_res_low 2.10 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.8 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.677 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5MJ2 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.98 _refine.ls_d_res_low 45.21 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14030 _refine.ls_number_reflns_R_free 702 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.96 _refine.ls_percent_reflns_R_free 5.00 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1587 _refine.ls_R_factor_R_free 0.2059 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1563 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.39 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.06 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.19 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 616 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 665 _refine_hist.d_res_high 1.98 _refine_hist.d_res_low 45.21 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 673 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.067 ? 926 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 11.569 ? 259 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.043 ? 110 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 119 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.9782 2.1309 . . 144 2660 100.00 . . . 0.2448 . 0.2280 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1309 2.3453 . . 140 2654 100.00 . . . 0.2359 . 0.1935 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3453 2.6847 . . 133 2664 100.00 . . . 0.2471 . 0.1828 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6847 3.3822 . . 143 2674 100.00 . . . 0.2057 . 0.1722 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3822 45.2211 . . 142 2676 100.00 . . . 0.1840 . 0.1274 . . . . . . . . . . # _struct.entry_id 5MJ2 _struct.title 'Extracellular domain of human CD83 - rhombohedral crystal form after UV-RIP (S-SAD data)' _struct.pdbx_descriptor 'CD83 antigen' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5MJ2 _struct_keywords.text 'Dendritic cell, receptor, immunoglobulin, immune system' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 83 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id SER _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 87 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 98 _struct_conf.end_auth_comp_id SER _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 102 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 20 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 92 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 35 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 107 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.041 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU A 7 ? ALA A 11 ? GLU A 22 ALA A 26 AA1 2 ASN A 102 ? THR A 112 ? ASN A 117 THR A 127 AA1 3 GLY A 88 ? GLN A 95 ? GLY A 103 GLN A 110 AA1 4 THR A 31 ? LEU A 37 ? THR A 46 LEU A 52 AA2 1 VAL A 16 ? LEU A 18 ? VAL A 31 LEU A 33 AA2 2 LEU A 77 ? ILE A 79 ? LEU A 92 ILE A 94 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 10 ? N VAL A 25 O THR A 112 ? O THR A 127 AA1 2 3 O VAL A 107 ? O VAL A 122 N TYR A 90 ? N TYR A 105 AA1 3 4 O THR A 89 ? O THR A 104 N LEU A 37 ? N LEU A 52 AA2 1 2 N VAL A 16 ? N VAL A 31 O ILE A 79 ? O ILE A 94 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id PEG _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'binding site for residue PEG A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 TRP A 24 ? TRP A 39 . ? 1_555 ? 2 AC1 2 ARG A 73 ? ARG A 88 . ? 3_675 ? # _atom_sites.entry_id 5MJ2 _atom_sites.fract_transf_matrix[1][1] 0.015879 _atom_sites.fract_transf_matrix[1][2] 0.009167 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018335 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007373 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 16 ? ? ? A . n A 1 2 SER 2 17 ? ? ? A . n A 1 3 PRO 3 18 18 PRO ALA A . n A 1 4 GLY 4 19 19 GLY GLY A . n A 1 5 THR 5 20 20 THR THR A . n A 1 6 PRO 6 21 21 PRO PRO A . n A 1 7 GLU 7 22 22 GLU GLU A . n A 1 8 VAL 8 23 23 VAL VAL A . n A 1 9 LYS 9 24 24 LYS LYS A . n A 1 10 VAL 10 25 25 VAL VAL A . n A 1 11 ALA 11 26 26 ALA ALA A . n A 1 12 SER 12 27 27 SER SER A . n A 1 13 SER 13 28 28 SER SER A . n A 1 14 GLU 14 29 29 GLU GLU A . n A 1 15 ASP 15 30 30 ASP ASP A . n A 1 16 VAL 16 31 31 VAL VAL A . n A 1 17 ASP 17 32 32 ASP ASP A . n A 1 18 LEU 18 33 33 LEU LEU A . n A 1 19 PRO 19 34 34 PRO PRO A . n A 1 20 CYS 20 35 35 CYS CYS A . n A 1 21 THR 21 36 36 THR THR A . n A 1 22 ALA 22 37 37 ALA ALA A . n A 1 23 PRO 23 38 38 PRO PRO A . n A 1 24 TRP 24 39 39 TRP TRP A . n A 1 25 ASP 25 40 40 ASP ASP A . n A 1 26 PRO 26 41 41 PRO PRO A . n A 1 27 GLN 27 42 42 GLN GLN A . n A 1 28 VAL 28 43 43 VAL VAL A . n A 1 29 PRO 29 44 44 PRO PRO A . n A 1 30 TYR 30 45 45 TYR TYR A . n A 1 31 THR 31 46 46 THR THR A . n A 1 32 VAL 32 47 47 VAL VAL A . n A 1 33 SER 33 48 48 SER SER A . n A 1 34 TRP 34 49 49 TRP TRP A . n A 1 35 VAL 35 50 50 VAL VAL A . n A 1 36 LYS 36 51 51 LYS LYS A . n A 1 37 LEU 37 52 52 LEU LEU A . n A 1 38 LEU 38 53 53 LEU LEU A . n A 1 39 GLU 39 54 54 GLU GLU A . n A 1 40 GLY 40 55 ? ? ? A . n A 1 41 GLY 41 56 ? ? ? A . n A 1 42 GLU 42 57 ? ? ? A . n A 1 43 GLU 43 58 ? ? ? A . n A 1 44 ARG 44 59 ? ? ? A . n A 1 45 MET 45 60 ? ? ? A . n A 1 46 GLU 46 61 ? ? ? A . n A 1 47 THR 47 62 ? ? ? A . n A 1 48 PRO 48 63 ? ? ? A . n A 1 49 GLN 49 64 ? ? ? A . n A 1 50 GLU 50 65 ? ? ? A . n A 1 51 ASP 51 66 ? ? ? A . n A 1 52 HIS 52 67 ? ? ? A . n A 1 53 LEU 53 68 ? ? ? A . n A 1 54 ARG 54 69 ? ? ? A . n A 1 55 GLY 55 70 ? ? ? A . n A 1 56 GLN 56 71 ? ? ? A . n A 1 57 HIS 57 72 ? ? ? A . n A 1 58 TYR 58 73 ? ? ? A . n A 1 59 HIS 59 74 ? ? ? A . n A 1 60 GLN 60 75 ? ? ? A . n A 1 61 LYS 61 76 ? ? ? A . n A 1 62 GLY 62 77 ? ? ? A . n A 1 63 GLN 63 78 ? ? ? A . n A 1 64 ASN 64 79 ? ? ? A . n A 1 65 GLY 65 80 ? ? ? A . n A 1 66 SER 66 81 ? ? ? A . n A 1 67 PHE 67 82 ? ? ? A . n A 1 68 ASP 68 83 ? ? ? A . n A 1 69 ALA 69 84 ? ? ? A . n A 1 70 PRO 70 85 ? ? ? A . n A 1 71 ASN 71 86 86 ASN ASN A . n A 1 72 GLU 72 87 87 GLU GLU A . n A 1 73 ARG 73 88 88 ARG ARG A . n A 1 74 PRO 74 89 89 PRO PRO A . n A 1 75 TYR 75 90 90 TYR TYR A . n A 1 76 SER 76 91 91 SER SER A . n A 1 77 LEU 77 92 92 LEU LEU A . n A 1 78 LYS 78 93 93 LYS LYS A . n A 1 79 ILE 79 94 94 ILE ILE A . n A 1 80 ARG 80 95 95 ARG ARG A . n A 1 81 ASN 81 96 96 ASN ASN A . n A 1 82 THR 82 97 97 THR THR A . n A 1 83 THR 83 98 98 THR THR A . n A 1 84 SER 84 99 99 SER SER A . n A 1 85 SER 85 100 100 SER SER A . n A 1 86 ASN 86 101 101 ASN ASN A . n A 1 87 SER 87 102 102 SER SER A . n A 1 88 GLY 88 103 103 GLY GLY A . n A 1 89 THR 89 104 104 THR THR A . n A 1 90 TYR 90 105 105 TYR TYR A . n A 1 91 ARG 91 106 106 ARG ARG A . n A 1 92 CYS 92 107 107 CYS CYS A . n A 1 93 THR 93 108 108 THR THR A . n A 1 94 LEU 94 109 109 LEU LEU A . n A 1 95 GLN 95 110 110 GLN GLN A . n A 1 96 ASP 96 111 111 ASP ASP A . n A 1 97 PRO 97 112 112 PRO PRO A . n A 1 98 ASP 98 113 113 ASP ASP A . n A 1 99 GLY 99 114 114 GLY GLY A . n A 1 100 GLN 100 115 115 GLN GLN A . n A 1 101 ARG 101 116 116 ARG ARG A . n A 1 102 ASN 102 117 117 ASN ASN A . n A 1 103 LEU 103 118 118 LEU LEU A . n A 1 104 SER 104 119 119 SER SER A . n A 1 105 GLY 105 120 120 GLY GLY A . n A 1 106 LYS 106 121 121 LYS LYS A . n A 1 107 VAL 107 122 122 VAL VAL A . n A 1 108 ILE 108 123 123 ILE ILE A . n A 1 109 LEU 109 124 124 LEU LEU A . n A 1 110 ARG 110 125 125 ARG ARG A . n A 1 111 VAL 111 126 126 VAL VAL A . n A 1 112 THR 112 127 127 THR THR A . n A 1 113 GLY 113 128 128 GLY GLY A . n A 1 114 SER 114 129 129 SER SER A . n A 1 115 PRO 115 130 ? ? ? A . n A 1 116 ALA 116 131 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG 1 201 1 PEG PEG A . C 3 HOH 1 301 35 HOH HOH A . C 3 HOH 2 302 16 HOH HOH A . C 3 HOH 3 303 24 HOH HOH A . C 3 HOH 4 304 26 HOH HOH A . C 3 HOH 5 305 32 HOH HOH A . C 3 HOH 6 306 6 HOH HOH A . C 3 HOH 7 307 3 HOH HOH A . C 3 HOH 8 308 22 HOH HOH A . C 3 HOH 9 309 21 HOH HOH A . C 3 HOH 10 310 12 HOH HOH A . C 3 HOH 11 311 5 HOH HOH A . C 3 HOH 12 312 1 HOH HOH A . C 3 HOH 13 313 28 HOH HOH A . C 3 HOH 14 314 13 HOH HOH A . C 3 HOH 15 315 20 HOH HOH A . C 3 HOH 16 316 4 HOH HOH A . C 3 HOH 17 317 40 HOH HOH A . C 3 HOH 18 318 2 HOH HOH A . C 3 HOH 19 319 37 HOH HOH A . C 3 HOH 20 320 38 HOH HOH A . C 3 HOH 21 321 15 HOH HOH A . C 3 HOH 22 322 11 HOH HOH A . C 3 HOH 23 323 18 HOH HOH A . C 3 HOH 24 324 14 HOH HOH A . C 3 HOH 25 325 8 HOH HOH A . C 3 HOH 26 326 42 HOH HOH A . C 3 HOH 27 327 9 HOH HOH A . C 3 HOH 28 328 23 HOH HOH A . C 3 HOH 29 329 19 HOH HOH A . C 3 HOH 30 330 39 HOH HOH A . C 3 HOH 31 331 10 HOH HOH A . C 3 HOH 32 332 30 HOH HOH A . C 3 HOH 33 333 25 HOH HOH A . C 3 HOH 34 334 7 HOH HOH A . C 3 HOH 35 335 33 HOH HOH A . C 3 HOH 36 336 29 HOH HOH A . C 3 HOH 37 337 36 HOH HOH A . C 3 HOH 38 338 41 HOH HOH A . C 3 HOH 39 339 27 HOH HOH A . C 3 HOH 40 340 17 HOH HOH A . C 3 HOH 41 341 31 HOH HOH A . C 3 HOH 42 342 34 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 190 ? 1 MORE 3 ? 1 'SSA (A^2)' 5380 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 302 ? C HOH . 2 1 A HOH 318 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-03-29 2 'Structure model' 1 1 2017-04-26 3 'Structure model' 1 2 2017-09-06 4 'Structure model' 1 3 2018-03-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 4 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_audit_support 2 4 'Structure model' entity_src_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_audit_support.funding_organization' 2 4 'Structure model' '_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id' 3 4 'Structure model' '_entity_src_gen.pdbx_host_org_scientific_name' 4 4 'Structure model' '_entity_src_gen.pdbx_host_org_variant' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 34.3849 45.7002 47.4216 0.3909 0.5595 0.3573 -0.0402 -0.0070 -0.0347 3.0457 5.6038 4.0550 -4.1228 2.9095 -4.0646 0.4703 1.6869 -0.2840 -0.8884 -0.6354 -0.6892 0.0707 1.4005 0.0595 'X-RAY DIFFRACTION' 2 ? refined 29.6594 39.5174 54.7491 0.3849 0.3200 0.3833 -0.0067 -0.0974 -0.0623 4.4327 7.0334 4.0541 -0.7632 -1.5794 0.9397 -0.0082 -0.1997 -0.5076 0.5453 0.1084 -0.3831 0.1624 0.0439 -0.1018 'X-RAY DIFFRACTION' 3 ? refined 21.2292 47.7263 57.1002 0.2829 0.3613 0.2775 -0.0227 0.0110 0.0420 2.4587 3.4856 3.8765 -0.6406 0.8300 2.8459 -0.0546 -0.0767 -0.1284 0.2194 0.0701 0.1148 0.1040 0.2384 -0.0679 'X-RAY DIFFRACTION' 4 ? refined 25.6277 36.3972 56.4688 0.4365 0.3029 0.5175 -0.0031 -0.0294 -0.0171 5.8173 3.2345 5.8056 -2.8781 -2.6848 2.1292 -0.4113 -0.2306 -1.3974 0.9247 0.2000 0.4242 1.0941 0.0277 0.1697 'X-RAY DIFFRACTION' 5 ? refined 22.3263 43.2500 49.4903 0.3154 0.3726 0.3417 -0.0329 -0.0487 -0.0314 3.3554 4.3567 3.8313 -1.3467 -1.4881 2.1728 0.0005 0.4024 -0.5204 -0.3323 -0.0458 0.4045 0.1896 -0.1321 0.0200 'X-RAY DIFFRACTION' 6 ? refined 14.6443 55.4542 55.9150 0.3188 0.4660 0.4910 -0.0236 0.0027 0.0532 6.1794 4.8442 6.2054 0.5073 -1.1007 -1.2634 0.2326 -0.3387 0.4803 -0.1399 0.5512 0.5729 -0.3310 -0.6619 -0.7067 'X-RAY DIFFRACTION' 7 ? refined 32.8879 38.2719 46.9189 0.4247 0.3660 0.4601 0.0020 0.0357 -0.0701 7.7521 4.0580 7.7599 -1.8043 0.0599 -2.1222 0.0346 0.2956 -0.8220 -0.7463 -0.1924 -1.2723 0.7808 0.6958 0.1137 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(chain A and resid 18:24)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(chain A and resid 25:38)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(chain A and resid 39:88)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(chain A and resid 89:98)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(chain A and resid 99:110)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(chain A and resid 111:120)' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? '(chain A and resid 121:129)' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? MxCuBE ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 PRO _pdbx_validate_rmsd_angle.auth_seq_id_1 18 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 18 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CB _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 18 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.51 _pdbx_validate_rmsd_angle.angle_target_value 103.30 _pdbx_validate_rmsd_angle.angle_deviation 7.21 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.20 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 28 ? ? 75.78 -4.01 2 1 THR A 127 ? ? -132.47 -159.07 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A PRO 18 ? CG ? A PRO 3 CG 2 1 Y 1 A PRO 18 ? CD ? A PRO 3 CD 3 1 Y 1 A GLU 54 ? CG ? A GLU 39 CG 4 1 Y 1 A GLU 54 ? CD ? A GLU 39 CD 5 1 Y 1 A GLU 54 ? OE1 ? A GLU 39 OE1 6 1 Y 1 A GLU 54 ? OE2 ? A GLU 39 OE2 7 1 Y 1 A GLN 115 ? CG ? A GLN 100 CG 8 1 Y 1 A GLN 115 ? CD ? A GLN 100 CD 9 1 Y 1 A GLN 115 ? OE1 ? A GLN 100 OE1 10 1 Y 1 A GLN 115 ? NE2 ? A GLN 100 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 16 ? A GLY 1 2 1 Y 1 A SER 17 ? A SER 2 3 1 Y 1 A GLY 55 ? A GLY 40 4 1 Y 1 A GLY 56 ? A GLY 41 5 1 Y 1 A GLU 57 ? A GLU 42 6 1 Y 1 A GLU 58 ? A GLU 43 7 1 Y 1 A ARG 59 ? A ARG 44 8 1 Y 1 A MET 60 ? A MET 45 9 1 Y 1 A GLU 61 ? A GLU 46 10 1 Y 1 A THR 62 ? A THR 47 11 1 Y 1 A PRO 63 ? A PRO 48 12 1 Y 1 A GLN 64 ? A GLN 49 13 1 Y 1 A GLU 65 ? A GLU 50 14 1 Y 1 A ASP 66 ? A ASP 51 15 1 Y 1 A HIS 67 ? A HIS 52 16 1 Y 1 A LEU 68 ? A LEU 53 17 1 Y 1 A ARG 69 ? A ARG 54 18 1 Y 1 A GLY 70 ? A GLY 55 19 1 Y 1 A GLN 71 ? A GLN 56 20 1 Y 1 A HIS 72 ? A HIS 57 21 1 Y 1 A TYR 73 ? A TYR 58 22 1 Y 1 A HIS 74 ? A HIS 59 23 1 Y 1 A GLN 75 ? A GLN 60 24 1 Y 1 A LYS 76 ? A LYS 61 25 1 Y 1 A GLY 77 ? A GLY 62 26 1 Y 1 A GLN 78 ? A GLN 63 27 1 Y 1 A ASN 79 ? A ASN 64 28 1 Y 1 A GLY 80 ? A GLY 65 29 1 Y 1 A SER 81 ? A SER 66 30 1 Y 1 A PHE 82 ? A PHE 67 31 1 Y 1 A ASP 83 ? A ASP 68 32 1 Y 1 A ALA 84 ? A ALA 69 33 1 Y 1 A PRO 85 ? A PRO 70 34 1 Y 1 A PRO 130 ? A PRO 115 35 1 Y 1 A ALA 131 ? A ALA 116 # _pdbx_audit_support.funding_organization 'German Research Foundation' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number SFB796 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DI(HYDROXYETHYL)ETHER' PEG 3 water HOH #