HEADER TRANSCRIPTION 30-NOV-16 5MJ5 TITLE CRYSTAL STRUCTURE OF THE RETINOID X RECEPTOR ALPHA IN COMPLEX WITH TITLE 2 SYNTHETICHONOKIOL DERIVATIVE 3 AND A FRAGMENT OF THE TIF2 CO- TITLE 3 ACTIVATOR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR RXR-ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 2 GROUP B MEMBER 1,RETINOID X COMPND 5 RECEPTOR ALPHA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: LYS-HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN-ASP-SER; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RXRA, NR2B1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS RXR TIF2 HONOKIOL, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.A.ANDREI,L.BRUNSVELD,M.SCHEEPSTRA,C.OTTMANN REVDAT 3 17-JAN-24 5MJ5 1 REMARK REVDAT 2 10-AUG-22 5MJ5 1 REMARK REVDAT 1 08-NOV-17 5MJ5 0 JRNL AUTH M.SCHEEPSTRA,S.A.ANDREI,R.M.J.M.DE VRIES,F.A.MEIJER,J.N.MA, JRNL AUTH 2 E.S.BURSTEIN,R.OLSSON,C.OTTMANN,L.G.MILROY,L.BRUNSVELD JRNL TITL LIGAND DEPENDENT SWITCH FROM RXR HOMO- TO RXR-NURR1 JRNL TITL 2 HETERODIMERIZATION. JRNL REF ACS CHEM NEUROSCI V. 8 2065 2017 JRNL REFN ESSN 1948-7193 JRNL PMID 28691794 JRNL DOI 10.1021/ACSCHEMNEURO.7B00216 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1-2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.990 REMARK 3 FREE R VALUE TEST SET COUNT : 418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.9240 - 2.7402 1.00 7093 160 0.1813 0.2329 REMARK 3 2 2.7402 - 2.1750 1.00 6832 123 0.2276 0.2423 REMARK 3 3 2.1750 - 1.9000 1.00 6706 135 0.2332 0.3091 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.001 1909 REMARK 3 ANGLE : 0.361 2585 REMARK 3 CHIRALITY : 0.034 290 REMARK 3 PLANARITY : 0.002 355 REMARK 3 DIHEDRAL : 12.886 1184 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2834 -11.2156 3.8361 REMARK 3 T TENSOR REMARK 3 T11: 0.3516 T22: 0.6124 REMARK 3 T33: 0.3712 T12: -0.0200 REMARK 3 T13: -0.0563 T23: 0.0932 REMARK 3 L TENSOR REMARK 3 L11: 8.9862 L22: 8.4906 REMARK 3 L33: 7.9581 L12: 5.7164 REMARK 3 L13: 5.1095 L23: 5.4966 REMARK 3 S TENSOR REMARK 3 S11: 0.1874 S12: 0.1589 S13: -0.4883 REMARK 3 S21: 0.6192 S22: 0.1920 S23: -1.5822 REMARK 3 S31: 0.1949 S32: 0.9947 S33: -0.3930 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 264 THROUGH 318 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4441 -15.3375 6.8564 REMARK 3 T TENSOR REMARK 3 T11: 0.2639 T22: 0.3402 REMARK 3 T33: 0.3145 T12: 0.0417 REMARK 3 T13: -0.0745 T23: 0.0668 REMARK 3 L TENSOR REMARK 3 L11: 2.9911 L22: 3.9215 REMARK 3 L33: 3.4387 L12: 0.1960 REMARK 3 L13: 0.1719 L23: 0.6409 REMARK 3 S TENSOR REMARK 3 S11: 0.0627 S12: -0.1939 S13: -0.4967 REMARK 3 S21: 0.5196 S22: -0.0184 S23: -0.1279 REMARK 3 S31: 0.1483 S32: 0.4707 S33: -0.0865 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 319 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9861 -20.9455 -13.8283 REMARK 3 T TENSOR REMARK 3 T11: 0.4369 T22: 0.5728 REMARK 3 T33: 0.4808 T12: 0.0935 REMARK 3 T13: -0.0828 T23: -0.2121 REMARK 3 L TENSOR REMARK 3 L11: 7.2886 L22: 3.6348 REMARK 3 L33: 2.0492 L12: 1.0632 REMARK 3 L13: 1.1578 L23: -0.9452 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: 1.3374 S13: -0.3921 REMARK 3 S21: -0.7684 S22: 0.0812 S23: 0.2244 REMARK 3 S31: 0.0480 S32: 0.4519 S33: -0.2517 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 341 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0319 -8.0520 -6.7604 REMARK 3 T TENSOR REMARK 3 T11: 0.2362 T22: 0.4534 REMARK 3 T33: 0.2346 T12: -0.0016 REMARK 3 T13: -0.0106 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 3.2435 L22: 4.9489 REMARK 3 L33: 4.2058 L12: 1.0106 REMARK 3 L13: 1.1340 L23: 0.9143 REMARK 3 S TENSOR REMARK 3 S11: -0.1769 S12: 0.4851 S13: -0.1084 REMARK 3 S21: -0.3309 S22: 0.0063 S23: -0.1675 REMARK 3 S31: -0.1811 S32: 0.5125 S33: 0.1801 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 376 THROUGH 413 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7827 2.3605 6.7543 REMARK 3 T TENSOR REMARK 3 T11: 0.4047 T22: 0.3822 REMARK 3 T33: 0.3222 T12: -0.1137 REMARK 3 T13: -0.1288 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 4.2065 L22: 5.7694 REMARK 3 L33: 2.6394 L12: 1.7275 REMARK 3 L13: 0.3010 L23: -1.9435 REMARK 3 S TENSOR REMARK 3 S11: 0.0189 S12: 0.0298 S13: 0.3142 REMARK 3 S21: 0.7120 S22: -0.0862 S23: -0.3576 REMARK 3 S31: -0.5996 S32: 0.4762 S33: 0.0611 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 414 THROUGH 441 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8239 -10.0162 -1.7173 REMARK 3 T TENSOR REMARK 3 T11: 0.1404 T22: 0.2927 REMARK 3 T33: 0.2280 T12: 0.0164 REMARK 3 T13: -0.0318 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 3.4389 L22: 6.8228 REMARK 3 L33: 3.4958 L12: 0.1229 REMARK 3 L13: 0.9833 L23: -0.5116 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: 0.0293 S13: -0.4411 REMARK 3 S21: -0.1155 S22: 0.0335 S23: 0.3089 REMARK 3 S31: 0.0176 S32: 0.0501 S33: -0.0532 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 442 THROUGH 456 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4202 -26.6475 6.6135 REMARK 3 T TENSOR REMARK 3 T11: 0.4386 T22: 0.4759 REMARK 3 T33: 0.8080 T12: -0.0281 REMARK 3 T13: -0.0516 T23: 0.1332 REMARK 3 L TENSOR REMARK 3 L11: 3.3584 L22: 6.0954 REMARK 3 L33: 8.8462 L12: 1.5965 REMARK 3 L13: 5.4145 L23: 1.7819 REMARK 3 S TENSOR REMARK 3 S11: 0.5587 S12: -0.3379 S13: -1.2538 REMARK 3 S21: 0.0768 S22: 0.0426 S23: 0.7255 REMARK 3 S31: 1.2554 S32: -0.6221 S33: -0.4960 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 472 THROUGH 481 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4791 -21.9399 19.1382 REMARK 3 T TENSOR REMARK 3 T11: 0.6887 T22: 0.5442 REMARK 3 T33: 0.5779 T12: 0.0839 REMARK 3 T13: -0.0008 T23: 0.1512 REMARK 3 L TENSOR REMARK 3 L11: 9.9301 L22: 2.0761 REMARK 3 L33: 7.8312 L12: 3.3573 REMARK 3 L13: -3.7376 L23: -3.2207 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: -1.1812 S13: -1.4136 REMARK 3 S21: 1.5930 S22: -0.1240 S23: -0.5385 REMARK 3 S31: 0.0212 S32: -0.3186 S33: 0.1496 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MJ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1200002462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0331 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.2.1 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.28 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21110 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 68.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.90 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 9.80 REMARK 200 R MERGE FOR SHELL (I) : 1.06400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 5EC9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PIPES, PH 7.0, 0.1 M NACL, 22% REMARK 280 PEG 2K MME, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.85950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.07950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.07950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.28925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.07950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.07950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.42975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.07950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.07950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.28925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.07950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.07950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.42975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.85950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 667 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 245 REMARK 465 THR A 246 REMARK 465 GLU A 247 REMARK 465 THR A 248 REMARK 465 TYR A 249 REMARK 465 VAL A 250 REMARK 465 GLU A 251 REMARK 465 ALA A 252 REMARK 465 ASN A 253 REMARK 465 MET A 254 REMARK 465 GLY A 255 REMARK 465 LEU A 256 REMARK 465 ASN A 257 REMARK 465 PRO A 258 REMARK 465 SER A 259 REMARK 465 SER A 260 REMARK 465 SER B 483 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 608 O HOH A 702 2.08 REMARK 500 O HOH A 688 O HOH A 719 2.10 REMARK 500 O HOH A 646 O HOH A 699 2.15 REMARK 500 O HOH A 704 O HOH A 716 2.16 REMARK 500 O HOH A 714 O HOH A 720 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 263 NE2 HIS B 472 3444 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 288 -7.85 81.72 REMARK 500 LEU A 353 -66.61 -126.73 REMARK 500 GLN A 411 77.34 -115.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 724 DISTANCE = 6.60 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7O0 A 501 DBREF 5MJ5 A 229 457 UNP P19793 RXRA_HUMAN 229 457 DBREF 5MJ5 B 471 483 PDB 5MJ5 5MJ5 471 483 SEQRES 1 A 229 ASP MET PRO VAL GLU ARG ILE LEU GLU ALA GLU LEU ALA SEQRES 2 A 229 VAL GLU PRO LYS THR GLU THR TYR VAL GLU ALA ASN MET SEQRES 3 A 229 GLY LEU ASN PRO SER SER PRO ASN ASP PRO VAL THR ASN SEQRES 4 A 229 ILE CYS GLN ALA ALA ASP LYS GLN LEU PHE THR LEU VAL SEQRES 5 A 229 GLU TRP ALA LYS ARG ILE PRO HIS PHE SER GLU LEU PRO SEQRES 6 A 229 LEU ASP ASP GLN VAL ILE LEU LEU ARG ALA GLY TRP ASN SEQRES 7 A 229 GLU LEU LEU ILE ALA SER PHE SER HIS ARG SER ILE ALA SEQRES 8 A 229 VAL LYS ASP GLY ILE LEU LEU ALA THR GLY LEU HIS VAL SEQRES 9 A 229 HIS ARG ASN SER ALA HIS SER ALA GLY VAL GLY ALA ILE SEQRES 10 A 229 PHE ASP ARG VAL LEU THR GLU LEU VAL SER LYS MET ARG SEQRES 11 A 229 ASP MET GLN MET ASP LYS THR GLU LEU GLY CYS LEU ARG SEQRES 12 A 229 ALA ILE VAL LEU PHE ASN PRO ASP SER LYS GLY LEU SER SEQRES 13 A 229 ASN PRO ALA GLU VAL GLU ALA LEU ARG GLU LYS VAL TYR SEQRES 14 A 229 ALA SER LEU GLU ALA TYR CYS LYS HIS LYS TYR PRO GLU SEQRES 15 A 229 GLN PRO GLY ARG PHE ALA LYS LEU LEU LEU ARG LEU PRO SEQRES 16 A 229 ALA LEU ARG SER ILE GLY LEU LYS CYS LEU GLU HIS LEU SEQRES 17 A 229 PHE PHE PHE LYS LEU ILE GLY ASP THR PRO ILE ASP THR SEQRES 18 A 229 PHE LEU MET GLU MET LEU GLU ALA SEQRES 1 B 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER HET 7O0 A 501 43 HETNAM 7O0 (~{E})-3-[4-OXIDANYL-3-[3-(PHENYLMETHYL) HETNAM 2 7O0 PHENYL]PHENYL]PROP-2-ENOIC ACID FORMUL 3 7O0 C22 H18 O3 FORMUL 4 HOH *127(H2 O) HELIX 1 AA1 PRO A 231 VAL A 242 1 12 HELIX 2 AA2 ASP A 263 ILE A 286 1 24 HELIX 3 AA3 PRO A 293 SER A 317 1 25 HELIX 4 AA4 ARG A 334 ALA A 340 1 7 HELIX 5 AA5 VAL A 342 LEU A 353 1 12 HELIX 6 AA6 LEU A 353 GLN A 361 1 9 HELIX 7 AA7 ASP A 363 PHE A 376 1 14 HELIX 8 AA8 ASN A 385 TYR A 408 1 24 HELIX 9 AA9 GLY A 413 LEU A 420 1 8 HELIX 10 AB1 ARG A 421 ILE A 442 1 22 HELIX 11 AB2 ASP A 448 GLU A 456 1 9 HELIX 12 AB3 LYS B 473 ASP B 481 1 9 SHEET 1 AA1 2 GLY A 323 LEU A 325 0 SHEET 2 AA1 2 HIS A 331 HIS A 333 -1 O VAL A 332 N ILE A 324 SITE 1 AC1 15 ILE A 268 ALA A 271 GLN A 275 ASN A 306 SITE 2 AC1 15 PHE A 313 ARG A 316 ILE A 324 LEU A 326 SITE 3 AC1 15 ALA A 327 VAL A 332 VAL A 342 PHE A 346 SITE 4 AC1 15 CYS A 432 LEU A 436 HOH A 630 CRYST1 68.159 68.159 109.719 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014672 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014672 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009114 0.00000