HEADER PHOTOSYNTHESIS 01-DEC-16 5MJR TITLE STRUCTURE OF PSB29 AT 1.55A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN THF1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 146786; SOURCE 4 GENE: THF1, TLR1134; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: KRZ; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSETA MODIFIED KEYWDS PHOTOSYSTEM II FTSH, PHOTOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR J.W.MURRAY,A.KOZLO REVDAT 2 17-JAN-24 5MJR 1 REMARK REVDAT 1 23-AUG-17 5MJR 0 JRNL AUTH M.BEC KOVA,J.YU,V.KRYNICKA,A.KOZLO,S.SHAO,P.KONIK,J.KOMENDA, JRNL AUTH 2 J.W.MURRAY,P.J.NIXON JRNL TITL STRUCTURE OF PSB29/THF1 AND ITS ASSOCIATION WITH THE FTSH JRNL TITL 2 PROTEASE COMPLEX INVOLVED IN PHOTOSYSTEM II REPAIR IN JRNL TITL 3 CYANOBACTERIA. JRNL REF PHILOS. TRANS. R. SOC. V. 372 2017 JRNL REF 2 LOND., B, BIOL. SCI. JRNL REFN ESSN 1471-2970 JRNL PMID 28808107 JRNL DOI 10.1098/RSTB.2016.0394 REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 36039 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.116 REMARK 3 R VALUE (WORKING SET) : 0.114 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1895 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2630 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.1490 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1503 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.40000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : -0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.71000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.048 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.030 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.629 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1587 ; 0.026 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1454 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2160 ; 2.181 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3373 ; 1.160 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 196 ; 5.448 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;30.416 ;23.659 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 268 ;12.642 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.901 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 237 ; 0.166 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1782 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 332 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 766 ; 2.247 ; 1.339 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 765 ; 2.248 ; 1.336 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 962 ; 2.553 ; 2.019 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 963 ; 2.552 ; 2.022 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 821 ; 5.237 ; 1.809 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 817 ; 5.239 ; 1.804 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1190 ; 4.885 ; 2.555 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1898 ; 4.684 ;18.360 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1838 ; 4.413 ;17.450 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3041 ; 5.187 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 150 ;32.786 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3092 ;14.539 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MJR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002580. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91730 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37960 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 42.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 13.56 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1923 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 1.77000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5MJO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRISODIUM CITRATE, 20% W/V PEG REMARK 280 6000, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.05000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 ARG A -15 REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 190 REMARK 465 SER A 191 REMARK 465 LEU A 192 REMARK 465 MET A 193 REMARK 465 LYS A 194 REMARK 465 GLU A 195 REMARK 465 LEU A 196 REMARK 465 VAL A 197 REMARK 465 GLU A 198 REMARK 465 GLN A 199 REMARK 465 GLU A 200 REMARK 465 ARG A 201 REMARK 465 LYS A 202 REMARK 465 ARG A 203 REMARK 465 ARG A 204 REMARK 465 ALA A 205 REMARK 465 GLN A 206 REMARK 465 GLN A 207 REMARK 465 THR A 208 REMARK 465 SER A 209 REMARK 465 ALA A 210 REMARK 465 PRO A 211 REMARK 465 PRO A 212 REMARK 465 ALA A 213 REMARK 465 VAL A 214 REMARK 465 ASP A 215 REMARK 465 ALA A 216 REMARK 465 SER A 217 REMARK 465 SER A 218 REMARK 465 ASP A 219 REMARK 465 ALA A 220 REMARK 465 PRO A 221 REMARK 465 ALA A 222 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 149 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1103 O HOH A 1267 1.67 REMARK 500 O HOH A 1117 O HOH A 1268 1.76 REMARK 500 O THR A 128 O HOH A 1101 1.94 REMARK 500 CD ARG A 5 O HOH A 1139 1.96 REMARK 500 OE1 GLN A 144 O HOH A 1102 1.99 REMARK 500 O HOH A 1144 O HOH A 1160 1.99 REMARK 500 O HOH A 1254 O HOH A 1279 2.09 REMARK 500 O HOH A 1158 O HOH A 1281 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 41 CZ ARG A 41 NH2 0.110 REMARK 500 ARG A 47 CZ ARG A 47 NH2 0.086 REMARK 500 SER A 115 CB SER A 115 OG 0.160 REMARK 500 SER A 119 CB SER A 119 OG 0.093 REMARK 500 ALA A 147 CA ALA A 147 CB -0.155 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 5 CD - NE - CZ ANGL. DEV. = -9.1 DEGREES REMARK 500 ARG A 5 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 GLU A 70 OE1 - CD - OE2 ANGL. DEV. = -9.2 DEGREES REMARK 500 GLU A 70 CG - CD - OE2 ANGL. DEV. = 18.2 DEGREES REMARK 500 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 104 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 184 CB - CG - OD2 ANGL. DEV. = -8.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 147 131.10 -31.44 REMARK 500 HIS A 153 55.06 -95.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1339 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1340 DISTANCE = 5.93 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1000 DBREF 5MJR A 1 222 UNP Q8DJT8 THF1_THEEB 1 222 SEQADV 5MJR MET A -16 UNP Q8DJT8 INITIATING METHIONINE SEQADV 5MJR ARG A -15 UNP Q8DJT8 EXPRESSION TAG SEQADV 5MJR GLY A -14 UNP Q8DJT8 EXPRESSION TAG SEQADV 5MJR SER A -13 UNP Q8DJT8 EXPRESSION TAG SEQADV 5MJR HIS A -12 UNP Q8DJT8 EXPRESSION TAG SEQADV 5MJR HIS A -11 UNP Q8DJT8 EXPRESSION TAG SEQADV 5MJR HIS A -10 UNP Q8DJT8 EXPRESSION TAG SEQADV 5MJR HIS A -9 UNP Q8DJT8 EXPRESSION TAG SEQADV 5MJR HIS A -8 UNP Q8DJT8 EXPRESSION TAG SEQADV 5MJR HIS A -7 UNP Q8DJT8 EXPRESSION TAG SEQADV 5MJR GLY A -6 UNP Q8DJT8 EXPRESSION TAG SEQADV 5MJR LEU A -5 UNP Q8DJT8 EXPRESSION TAG SEQADV 5MJR VAL A -4 UNP Q8DJT8 EXPRESSION TAG SEQADV 5MJR PRO A -3 UNP Q8DJT8 EXPRESSION TAG SEQADV 5MJR ARG A -2 UNP Q8DJT8 EXPRESSION TAG SEQADV 5MJR GLY A -1 UNP Q8DJT8 EXPRESSION TAG SEQADV 5MJR SER A 0 UNP Q8DJT8 EXPRESSION TAG SEQRES 1 A 239 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY LEU VAL SEQRES 2 A 239 PRO ARG GLY SER MET GLN ASN PRO ARG THR VAL SER ASP SEQRES 3 A 239 THR LYS ARG ALA PHE TYR ALA ALA HIS THR ARG PRO ILE SEQRES 4 A 239 HIS SER ILE TYR ARG ARG PHE ILE GLU GLU LEU LEU VAL SEQRES 5 A 239 GLU ILE HIS LEU LEU ARG VAL ASN VAL ASP PHE ARG TYR SEQRES 6 A 239 SER PRO LEU PHE ALA LEU GLY VAL VAL THR ALA PHE ASP SEQRES 7 A 239 GLN PHE MET GLU GLY TYR GLN PRO GLU GLY ASP ARG ASP SEQRES 8 A 239 ARG ILE PHE HIS ALA LEU CYS VAL ALA GLU GLU MET ASN SEQRES 9 A 239 PRO GLN GLN LEU LYS GLU ASP ALA ALA SER TRP GLN GLN SEQRES 10 A 239 TYR GLN GLY ARG PRO LEU SER GLN ILE LEU ASP GLU LEU SEQRES 11 A 239 ASN SER GLY GLN PRO SER ALA PRO LEU ASN SER LEU ASN SEQRES 12 A 239 HIS THR GLY LYS TYR SER ARG LEU HIS ALA VAL GLY LEU SEQRES 13 A 239 TYR ALA PHE LEU GLN GLU LEU ALA GLY GLU VAL THR ILE SEQRES 14 A 239 HIS LEU ASN GLU THR LEU ASP GLN LEU ALA PRO VAL ILE SEQRES 15 A 239 PRO LEU PRO ILE GLU LYS VAL LYS ARG ASP LEU GLU LEU SEQRES 16 A 239 TYR ARG SER ASN LEU ASP LYS ILE ASN GLN ALA ARG SER SEQRES 17 A 239 LEU MET LYS GLU LEU VAL GLU GLN GLU ARG LYS ARG ARG SEQRES 18 A 239 ALA GLN GLN THR SER ALA PRO PRO ALA VAL ASP ALA SER SEQRES 19 A 239 SER ASP ALA PRO ALA HET SO4 A1000 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *240(H2 O) HELIX 1 AA1 THR A 6 HIS A 18 1 13 HELIX 2 AA2 HIS A 23 VAL A 42 1 20 HELIX 3 AA3 SER A 49 MET A 64 1 16 HELIX 4 AA4 PRO A 69 GLY A 71 5 3 HELIX 5 AA5 ASP A 72 GLU A 84 1 13 HELIX 6 AA6 ASN A 87 SER A 97 1 11 HELIX 7 AA7 TRP A 98 GLN A 102 5 5 HELIX 8 AA8 PRO A 105 SER A 115 1 11 HELIX 9 AA9 PRO A 121 ASN A 126 5 6 HELIX 10 AB1 SER A 132 LEU A 146 1 15 HELIX 11 AB2 GLY A 148 HIS A 153 1 6 HELIX 12 AB3 HIS A 153 ALA A 162 1 10 HELIX 13 AB4 PRO A 168 ASN A 182 1 15 HELIX 14 AB5 ASP A 184 GLN A 188 5 5 CISPEP 1 GLN A 68 PRO A 69 0 3.03 CISPEP 2 ALA A 120 PRO A 121 0 8.13 SITE 1 AC1 4 LYS A 171 ARG A 174 HOH A1128 HOH A1129 CRYST1 39.660 56.100 44.550 90.00 105.70 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025214 0.000000 0.007087 0.00000 SCALE2 0.000000 0.017825 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023317 0.00000