HEADER TRANSCRIPTION 02-DEC-16 5MK4 TITLE CRYSTAL STRUCTURE OF THE RETINOID X RECEPTOR ALPHA IN COMPLEX WITH TITLE 2 SYNTHETIC HONOKIOL DERIVATIVE 7 AND A FRAGMENT OF THE TIF2 CO- TITLE 3 ACTIVATOR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR RXR-ALPHA; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 229-457; COMPND 5 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 2 GROUP B MEMBER 1,RETINOID X COMPND 6 RECEPTOR ALPHA; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: UNP RESIDUES 686-696; COMPND 12 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 13 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RXRA, NR2B1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS RXR TIF2 HONOKIOL, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.A.ANDREI,M.SCHEEPSTRA,L.BRUNSVELD,C.OTTMANN REVDAT 3 17-JAN-24 5MK4 1 REMARK REVDAT 2 10-AUG-22 5MK4 1 REMARK REVDAT 1 08-NOV-17 5MK4 0 JRNL AUTH M.SCHEEPSTRA,S.A.ANDREI,R.M.J.M.DE VRIES,F.A.MEIJER,J.N.MA, JRNL AUTH 2 E.S.BURSTEIN,R.OLSSON,C.OTTMANN,L.G.MILROY,L.BRUNSVELD JRNL TITL LIGAND DEPENDENT SWITCH FROM RXR HOMO- TO RXR-NURR1 JRNL TITL 2 HETERODIMERIZATION. JRNL REF ACS CHEM NEUROSCI V. 8 2065 2017 JRNL REFN ESSN 1948-7193 JRNL PMID 28691794 JRNL DOI 10.1021/ACSCHEMNEURO.7B00216 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 36380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.4147 - 4.7020 1.00 2825 158 0.1718 0.2100 REMARK 3 2 4.7020 - 3.7323 1.00 2673 190 0.1366 0.1949 REMARK 3 3 3.7323 - 3.2605 1.00 2679 142 0.1541 0.2203 REMARK 3 4 3.2605 - 2.9624 1.00 2649 162 0.1760 0.2464 REMARK 3 5 2.9624 - 2.7501 1.00 2649 130 0.1751 0.2368 REMARK 3 6 2.7501 - 2.5880 1.00 2673 140 0.1627 0.2117 REMARK 3 7 2.5880 - 2.4583 1.00 2620 129 0.1720 0.2303 REMARK 3 8 2.4583 - 2.3513 1.00 2660 139 0.1574 0.2408 REMARK 3 9 2.3513 - 2.2608 1.00 2621 141 0.1921 0.2801 REMARK 3 10 2.2608 - 2.1828 1.00 2623 132 0.2480 0.3543 REMARK 3 11 2.1828 - 2.1145 1.00 2636 118 0.1925 0.2372 REMARK 3 12 2.1145 - 2.0541 1.00 2665 112 0.2019 0.2490 REMARK 3 13 2.0541 - 2.0000 0.99 2584 130 0.2222 0.2921 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3869 REMARK 3 ANGLE : 1.169 5244 REMARK 3 CHIRALITY : 0.068 585 REMARK 3 PLANARITY : 0.009 679 REMARK 3 DIHEDRAL : 11.388 4026 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3633 -16.5779 -11.6880 REMARK 3 T TENSOR REMARK 3 T11: 0.4746 T22: 0.1973 REMARK 3 T33: 0.5580 T12: -0.0094 REMARK 3 T13: 0.0671 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 1.6859 L22: 6.9774 REMARK 3 L33: 1.1218 L12: 1.7497 REMARK 3 L13: 0.1101 L23: 1.4708 REMARK 3 S TENSOR REMARK 3 S11: 0.5179 S12: -0.0450 S13: -0.8491 REMARK 3 S21: 0.3100 S22: -0.2284 S23: -0.0321 REMARK 3 S31: 0.8116 S32: -0.1985 S33: -0.2672 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 263 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.6558 -8.8806 -12.5454 REMARK 3 T TENSOR REMARK 3 T11: 0.1979 T22: 0.1344 REMARK 3 T33: 0.2027 T12: 0.0409 REMARK 3 T13: 0.0044 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 2.5159 L22: 1.6972 REMARK 3 L33: 3.3284 L12: 0.0681 REMARK 3 L13: 0.3735 L23: 0.4049 REMARK 3 S TENSOR REMARK 3 S11: 0.0298 S12: 0.0429 S13: -0.4063 REMARK 3 S21: 0.0554 S22: 0.0077 S23: 0.0949 REMARK 3 S31: 0.3354 S32: 0.0972 S33: -0.0593 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3321 -4.1873 -1.4719 REMARK 3 T TENSOR REMARK 3 T11: 0.2622 T22: 0.1807 REMARK 3 T33: 0.1879 T12: -0.0183 REMARK 3 T13: 0.0262 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 3.5536 L22: 3.5296 REMARK 3 L33: 2.6503 L12: 1.2000 REMARK 3 L13: 1.2393 L23: 1.3178 REMARK 3 S TENSOR REMARK 3 S11: 0.1746 S12: -0.5058 S13: -0.2746 REMARK 3 S21: 0.4775 S22: -0.2070 S23: 0.2105 REMARK 3 S31: 0.3035 S32: -0.2603 S33: 0.0229 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 376 THROUGH 413 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6900 -11.0868 -18.3671 REMARK 3 T TENSOR REMARK 3 T11: 0.2565 T22: 0.2045 REMARK 3 T33: 0.5233 T12: -0.0169 REMARK 3 T13: -0.0393 T23: -0.1256 REMARK 3 L TENSOR REMARK 3 L11: 4.7484 L22: 3.8149 REMARK 3 L33: 5.6114 L12: 2.2683 REMARK 3 L13: -1.5302 L23: -2.2211 REMARK 3 S TENSOR REMARK 3 S11: -0.0358 S12: 0.4476 S13: -0.6498 REMARK 3 S21: -0.2939 S22: 0.0529 S23: 0.4830 REMARK 3 S31: 0.6704 S32: -0.4234 S33: -0.0432 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 414 THROUGH 441 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1114 1.9675 -9.7098 REMARK 3 T TENSOR REMARK 3 T11: 0.1703 T22: 0.1194 REMARK 3 T33: 0.1319 T12: 0.0123 REMARK 3 T13: 0.0073 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 8.3531 L22: 5.0287 REMARK 3 L33: 1.3952 L12: 4.2735 REMARK 3 L13: 1.2837 L23: 0.9432 REMARK 3 S TENSOR REMARK 3 S11: 0.0783 S12: -0.1447 S13: 0.0887 REMARK 3 S21: 0.2101 S22: -0.0749 S23: 0.3660 REMARK 3 S31: 0.1038 S32: 0.0368 S33: -0.0043 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 442 THROUGH 457 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.2843 0.8941 -16.2913 REMARK 3 T TENSOR REMARK 3 T11: 0.2486 T22: 0.2661 REMARK 3 T33: 0.2189 T12: -0.0186 REMARK 3 T13: 0.0225 T23: -0.0379 REMARK 3 L TENSOR REMARK 3 L11: 6.5395 L22: 5.2637 REMARK 3 L33: 8.4612 L12: 4.4650 REMARK 3 L13: 3.8948 L23: 6.3398 REMARK 3 S TENSOR REMARK 3 S11: -0.3886 S12: 0.5864 S13: -0.1205 REMARK 3 S21: -0.4929 S22: 0.4553 S23: -0.3563 REMARK 3 S31: -0.4206 S32: 0.7898 S33: -0.1167 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 471 THROUGH 480 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.7521 -8.6032 -26.4944 REMARK 3 T TENSOR REMARK 3 T11: 0.2802 T22: 0.2801 REMARK 3 T33: 0.2055 T12: 0.0995 REMARK 3 T13: 0.0356 T23: -0.0635 REMARK 3 L TENSOR REMARK 3 L11: 6.2099 L22: 5.0084 REMARK 3 L33: 8.3138 L12: 0.5436 REMARK 3 L13: 0.5431 L23: 0.1731 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: -0.2056 S13: 0.2167 REMARK 3 S21: -0.5769 S22: 0.0044 S23: -0.2658 REMARK 3 S31: -0.3705 S32: 0.0770 S33: 0.0040 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 229 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3954 12.6944 -14.4584 REMARK 3 T TENSOR REMARK 3 T11: 0.2086 T22: 0.4511 REMARK 3 T33: 0.4320 T12: -0.0061 REMARK 3 T13: -0.0279 T23: -0.1094 REMARK 3 L TENSOR REMARK 3 L11: 6.9765 L22: 4.3958 REMARK 3 L33: 0.6347 L12: 2.9531 REMARK 3 L13: -0.7276 L23: -0.5464 REMARK 3 S TENSOR REMARK 3 S11: -0.2867 S12: 0.7875 S13: -0.0160 REMARK 3 S21: -0.3844 S22: 0.5980 S23: 0.8903 REMARK 3 S31: 0.2884 S32: -0.6939 S33: -0.3524 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 263 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7216 17.3566 -12.2982 REMARK 3 T TENSOR REMARK 3 T11: 0.1155 T22: 0.1835 REMARK 3 T33: 0.1873 T12: 0.0235 REMARK 3 T13: -0.0212 T23: -0.0508 REMARK 3 L TENSOR REMARK 3 L11: 2.4621 L22: 3.0526 REMARK 3 L33: 2.5693 L12: 0.2043 REMARK 3 L13: -0.1721 L23: 0.2613 REMARK 3 S TENSOR REMARK 3 S11: -0.0212 S12: 0.1800 S13: -0.0928 REMARK 3 S21: -0.1117 S22: -0.0974 S23: 0.3646 REMARK 3 S31: -0.1569 S32: -0.3782 S33: 0.0739 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 331 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8994 10.3457 -24.0275 REMARK 3 T TENSOR REMARK 3 T11: 0.2067 T22: 0.2802 REMARK 3 T33: 0.2020 T12: 0.0005 REMARK 3 T13: -0.0446 T23: -0.0572 REMARK 3 L TENSOR REMARK 3 L11: 3.8011 L22: 2.4283 REMARK 3 L33: 2.5752 L12: 1.0397 REMARK 3 L13: -0.9348 L23: -0.4375 REMARK 3 S TENSOR REMARK 3 S11: -0.0554 S12: 0.5695 S13: -0.2845 REMARK 3 S21: -0.4250 S22: 0.0294 S23: 0.2267 REMARK 3 S31: 0.0949 S32: -0.2848 S33: -0.0083 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 376 THROUGH 413 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3800 -0.5274 -7.3814 REMARK 3 T TENSOR REMARK 3 T11: 0.1988 T22: 0.2666 REMARK 3 T33: 0.5642 T12: -0.0984 REMARK 3 T13: 0.0448 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 3.7096 L22: 3.9390 REMARK 3 L33: 2.4482 L12: 2.0854 REMARK 3 L13: 1.6021 L23: 1.2060 REMARK 3 S TENSOR REMARK 3 S11: 0.1427 S12: -0.4932 S13: -0.9478 REMARK 3 S21: 0.5462 S22: 0.0053 S23: 0.5660 REMARK 3 S31: 0.4267 S32: -0.6278 S33: -0.0735 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 414 THROUGH 442 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1734 10.9026 -15.7232 REMARK 3 T TENSOR REMARK 3 T11: 0.1254 T22: 0.1715 REMARK 3 T33: 0.1388 T12: -0.0088 REMARK 3 T13: -0.0267 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 4.7216 L22: 7.7861 REMARK 3 L33: 1.9709 L12: 4.0261 REMARK 3 L13: -0.2707 L23: 0.4359 REMARK 3 S TENSOR REMARK 3 S11: -0.1310 S12: 0.2843 S13: -0.3853 REMARK 3 S21: -0.3588 S22: 0.1580 S23: -0.2747 REMARK 3 S31: -0.0598 S32: 0.0590 S33: -0.0548 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 443 THROUGH 457 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0757 27.3948 -8.0677 REMARK 3 T TENSOR REMARK 3 T11: 0.2648 T22: 0.2866 REMARK 3 T33: 0.2299 T12: -0.0245 REMARK 3 T13: -0.0213 T23: -0.0433 REMARK 3 L TENSOR REMARK 3 L11: 9.1297 L22: 4.5252 REMARK 3 L33: 5.5830 L12: 6.4220 REMARK 3 L13: -7.1131 L23: -5.0169 REMARK 3 S TENSOR REMARK 3 S11: 0.0633 S12: -0.2732 S13: 0.1764 REMARK 3 S21: -0.0152 S22: -0.2183 S23: -0.1926 REMARK 3 S31: -0.3051 S32: 0.6055 S33: 0.2559 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 471 THROUGH 481 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1621 24.8006 1.5881 REMARK 3 T TENSOR REMARK 3 T11: 0.1921 T22: 0.2344 REMARK 3 T33: 0.1835 T12: 0.0110 REMARK 3 T13: 0.0268 T23: -0.0611 REMARK 3 L TENSOR REMARK 3 L11: 8.0965 L22: 7.7932 REMARK 3 L33: 7.6644 L12: -3.5653 REMARK 3 L13: 1.5914 L23: -0.4536 REMARK 3 S TENSOR REMARK 3 S11: -0.0621 S12: -0.8664 S13: 0.1503 REMARK 3 S21: 0.4184 S22: -0.1317 S23: -0.1530 REMARK 3 S31: -0.0102 S32: -0.2638 S33: 0.1848 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MK4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002554. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0331 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.1 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36452 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 99.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.89700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 5EC9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M PIPES, PH 7.0, 0.1M NACL, 22% PEG REMARK 280 2K MME, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.84950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.60500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.07000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.60500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.84950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.07000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 244 REMARK 465 LYS A 245 REMARK 465 THR A 246 REMARK 465 GLU A 247 REMARK 465 THR A 248 REMARK 465 TYR A 249 REMARK 465 VAL A 250 REMARK 465 GLU A 251 REMARK 465 ALA A 252 REMARK 465 ASN A 253 REMARK 465 MET A 254 REMARK 465 GLY A 255 REMARK 465 LEU A 256 REMARK 465 ASN A 257 REMARK 465 PRO A 258 REMARK 465 ASP B 481 REMARK 465 LYS C 245 REMARK 465 THR C 246 REMARK 465 GLU C 247 REMARK 465 THR C 248 REMARK 465 TYR C 249 REMARK 465 VAL C 250 REMARK 465 GLU C 251 REMARK 465 ALA C 252 REMARK 465 ASN C 253 REMARK 465 MET C 254 REMARK 465 GLY C 255 REMARK 465 LEU C 256 REMARK 465 ASN C 257 REMARK 465 PRO C 258 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN C 270 O HOH C 601 2.08 REMARK 500 O HOH C 688 O HOH C 716 2.13 REMARK 500 O HOH A 725 O HOH A 748 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 288 -14.13 78.76 REMARK 500 LEU A 353 -62.55 -121.47 REMARK 500 ASN A 385 76.37 -157.67 REMARK 500 HIS C 288 -11.35 85.70 REMARK 500 LEU C 353 -65.31 -120.63 REMARK 500 ASN C 385 80.24 -150.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 450 0.06 SIDE CHAIN REMARK 500 PHE C 450 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 812 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A 813 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 814 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A 815 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A 816 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A 817 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH C 828 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH C 829 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH C 830 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH C 831 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH C 832 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH C 833 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH C 834 DISTANCE = 8.08 ANGSTROMS REMARK 525 HOH D 517 DISTANCE = 6.13 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue I5W A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue I5W C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 502 DBREF 5MK4 A 229 457 UNP P19793 RXRA_HUMAN 229 457 DBREF 5MK4 B 471 481 UNP Q15596 NCOA2_HUMAN 686 696 DBREF 5MK4 C 229 457 UNP P19793 RXRA_HUMAN 229 457 DBREF 5MK4 D 471 481 UNP Q15596 NCOA2_HUMAN 686 696 SEQRES 1 A 229 ASP MET PRO VAL GLU ARG ILE LEU GLU ALA GLU LEU ALA SEQRES 2 A 229 VAL GLU PRO LYS THR GLU THR TYR VAL GLU ALA ASN MET SEQRES 3 A 229 GLY LEU ASN PRO SER SER PRO ASN ASP PRO VAL THR ASN SEQRES 4 A 229 ILE CYS GLN ALA ALA ASP LYS GLN LEU PHE THR LEU VAL SEQRES 5 A 229 GLU TRP ALA LYS ARG ILE PRO HIS PHE SER GLU LEU PRO SEQRES 6 A 229 LEU ASP ASP GLN VAL ILE LEU LEU ARG ALA GLY TRP ASN SEQRES 7 A 229 GLU LEU LEU ILE ALA SER PHE SER HIS ARG SER ILE ALA SEQRES 8 A 229 VAL LYS ASP GLY ILE LEU LEU ALA THR GLY LEU HIS VAL SEQRES 9 A 229 HIS ARG ASN SER ALA HIS SER ALA GLY VAL GLY ALA ILE SEQRES 10 A 229 PHE ASP ARG VAL LEU THR GLU LEU VAL SER LYS MET ARG SEQRES 11 A 229 ASP MET GLN MET ASP LYS THR GLU LEU GLY CYS LEU ARG SEQRES 12 A 229 ALA ILE VAL LEU PHE ASN PRO ASP SER LYS GLY LEU SER SEQRES 13 A 229 ASN PRO ALA GLU VAL GLU ALA LEU ARG GLU LYS VAL TYR SEQRES 14 A 229 ALA SER LEU GLU ALA TYR CYS LYS HIS LYS TYR PRO GLU SEQRES 15 A 229 GLN PRO GLY ARG PHE ALA LYS LEU LEU LEU ARG LEU PRO SEQRES 16 A 229 ALA LEU ARG SER ILE GLY LEU LYS CYS LEU GLU HIS LEU SEQRES 17 A 229 PHE PHE PHE LYS LEU ILE GLY ASP THR PRO ILE ASP THR SEQRES 18 A 229 PHE LEU MET GLU MET LEU GLU ALA SEQRES 1 B 11 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SEQRES 1 C 229 ASP MET PRO VAL GLU ARG ILE LEU GLU ALA GLU LEU ALA SEQRES 2 C 229 VAL GLU PRO LYS THR GLU THR TYR VAL GLU ALA ASN MET SEQRES 3 C 229 GLY LEU ASN PRO SER SER PRO ASN ASP PRO VAL THR ASN SEQRES 4 C 229 ILE CYS GLN ALA ALA ASP LYS GLN LEU PHE THR LEU VAL SEQRES 5 C 229 GLU TRP ALA LYS ARG ILE PRO HIS PHE SER GLU LEU PRO SEQRES 6 C 229 LEU ASP ASP GLN VAL ILE LEU LEU ARG ALA GLY TRP ASN SEQRES 7 C 229 GLU LEU LEU ILE ALA SER PHE SER HIS ARG SER ILE ALA SEQRES 8 C 229 VAL LYS ASP GLY ILE LEU LEU ALA THR GLY LEU HIS VAL SEQRES 9 C 229 HIS ARG ASN SER ALA HIS SER ALA GLY VAL GLY ALA ILE SEQRES 10 C 229 PHE ASP ARG VAL LEU THR GLU LEU VAL SER LYS MET ARG SEQRES 11 C 229 ASP MET GLN MET ASP LYS THR GLU LEU GLY CYS LEU ARG SEQRES 12 C 229 ALA ILE VAL LEU PHE ASN PRO ASP SER LYS GLY LEU SER SEQRES 13 C 229 ASN PRO ALA GLU VAL GLU ALA LEU ARG GLU LYS VAL TYR SEQRES 14 C 229 ALA SER LEU GLU ALA TYR CYS LYS HIS LYS TYR PRO GLU SEQRES 15 C 229 GLN PRO GLY ARG PHE ALA LYS LEU LEU LEU ARG LEU PRO SEQRES 16 C 229 ALA LEU ARG SER ILE GLY LEU LYS CYS LEU GLU HIS LEU SEQRES 17 C 229 PHE PHE PHE LYS LEU ILE GLY ASP THR PRO ILE ASP THR SEQRES 18 C 229 PHE LEU MET GLU MET LEU GLU ALA SEQRES 1 D 11 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP HET I5W A 501 42 HET CL A 502 1 HET I5W C 501 42 HET CL C 502 1 HETNAM I5W (~{E})-3-[3-(2-METHYL-5-PHENYL-PHENYL)-4-OXIDANYL- HETNAM 2 I5W PHENYL]PROP-2-ENOIC ACID HETNAM CL CHLORIDE ION FORMUL 5 I5W 2(C22 H18 O3) FORMUL 6 CL 2(CL 1-) FORMUL 9 HOH *476(H2 O) HELIX 1 AA1 PRO A 231 GLU A 243 1 13 HELIX 2 AA2 ASN A 262 ARG A 285 1 24 HELIX 3 AA3 HIS A 288 LEU A 292 5 5 HELIX 4 AA4 PRO A 293 SER A 317 1 25 HELIX 5 AA5 ARG A 334 ALA A 340 1 7 HELIX 6 AA6 VAL A 342 LEU A 353 1 12 HELIX 7 AA7 LEU A 353 GLN A 361 1 9 HELIX 8 AA8 ASP A 363 PHE A 376 1 14 HELIX 9 AA9 ASN A 385 TYR A 408 1 24 HELIX 10 AB1 GLY A 413 LEU A 420 1 8 HELIX 11 AB2 ARG A 421 ILE A 442 1 22 HELIX 12 AB3 THR A 449 ALA A 457 1 9 HELIX 13 AB4 LYS B 473 LEU B 479 1 7 HELIX 14 AB5 PRO C 231 GLU C 243 1 13 HELIX 15 AB6 ASN C 262 ARG C 285 1 24 HELIX 16 AB7 HIS C 288 LEU C 292 5 5 HELIX 17 AB8 PRO C 293 SER C 317 1 25 HELIX 18 AB9 ILE C 318 VAL C 320 5 3 HELIX 19 AC1 ARG C 334 ALA C 340 1 7 HELIX 20 AC2 VAL C 342 LEU C 353 1 12 HELIX 21 AC3 LEU C 353 GLN C 361 1 9 HELIX 22 AC4 ASP C 363 PHE C 376 1 14 HELIX 23 AC5 ASN C 385 TYR C 408 1 24 HELIX 24 AC6 GLY C 413 LEU C 420 1 8 HELIX 25 AC7 ARG C 421 ILE C 442 1 22 HELIX 26 AC8 THR C 449 ALA C 457 1 9 HELIX 27 AC9 LYS D 473 GLN D 480 1 8 SHEET 1 AA1 2 GLY A 323 LEU A 325 0 SHEET 2 AA1 2 HIS A 331 HIS A 333 -1 O VAL A 332 N ILE A 324 SHEET 1 AA2 2 GLY C 323 LEU C 325 0 SHEET 2 AA2 2 HIS C 331 HIS C 333 -1 O VAL C 332 N ILE C 324 SITE 1 AC1 13 ILE A 268 ALA A 271 ALA A 272 GLN A 275 SITE 2 AC1 13 ASN A 306 PHE A 313 ARG A 316 LEU A 326 SITE 3 AC1 13 ALA A 327 VAL A 342 PHE A 346 CYS A 432 SITE 4 AC1 13 HOH A 670 SITE 1 AC2 3 ARG A 393 ARG C 421 HOH C 677 SITE 1 AC3 13 ILE C 268 ALA C 271 GLN C 275 ASN C 306 SITE 2 AC3 13 LEU C 309 PHE C 313 ARG C 316 LEU C 326 SITE 3 AC3 13 ALA C 327 PHE C 346 CYS C 432 LEU C 436 SITE 4 AC3 13 HOH C 674 SITE 1 AC4 3 ARG A 421 HOH A 668 ARG C 393 CRYST1 71.699 74.140 99.210 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013947 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013488 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010080 0.00000