HEADER HYDROLASE 05-DEC-16 5MKW TITLE CRYSTAL STRUCTURE OF THE HUMAN ZRANB3 HNH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ANNEALING HELICASE 2,AH2,ZINC FINGER RAN-BINDING DOMAIN- COMPND 5 CONTAINING PROTEIN 3; COMPND 6 EC: 3.6.4.-,3.1.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZRANB3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENDONUCLEASE, METALLOPROTEIN, ZINC-BINDING, DNA-BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ARIZA REVDAT 3 09-OCT-19 5MKW 1 REMARK REVDAT 2 30-AUG-17 5MKW 1 REMARK REVDAT 1 28-JUN-17 5MKW 0 JRNL AUTH M.SEBESTA,C.D.O.COOPER,A.ARIZA,C.J.CARNIE,D.AHEL JRNL TITL STRUCTURAL INSIGHTS INTO THE FUNCTION OF ZRANB3 IN JRNL TITL 2 REPLICATION STRESS RESPONSE. JRNL REF NAT COMMUN V. 8 15847 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28621305 JRNL DOI 10.1038/NCOMMS15847 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23410 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1209 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1689 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1904 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 232 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.235 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2067 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2013 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2793 ; 1.498 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4609 ; 1.017 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 262 ; 6.647 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;29.650 ;23.451 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 389 ;15.743 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;20.606 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 299 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2383 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 530 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 970 ; 2.069 ; 2.045 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 969 ; 2.062 ; 2.042 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1216 ; 2.997 ; 3.043 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1217 ; 3.001 ; 3.047 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1097 ; 3.124 ; 2.440 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1097 ; 3.122 ; 2.441 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1564 ; 4.772 ; 3.491 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2576 ; 7.578 ;17.559 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2479 ; 7.473 ;16.847 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 116 B 1 116 14006 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): -7.6120 -19.6920 10.8110 REMARK 3 T TENSOR REMARK 3 T11: 0.0054 T22: 0.0251 REMARK 3 T33: 0.1820 T12: -0.0072 REMARK 3 T13: 0.0011 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.6001 L22: 0.5861 REMARK 3 L33: 0.4756 L12: 0.0209 REMARK 3 L13: 0.3468 L23: -0.1536 REMARK 3 S TENSOR REMARK 3 S11: 0.0424 S12: -0.1037 S13: -0.0143 REMARK 3 S21: -0.0250 S22: -0.0505 S23: -0.0094 REMARK 3 S31: 0.0155 S32: -0.0188 S33: 0.0081 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): -7.2550 -18.5750 -15.6920 REMARK 3 T TENSOR REMARK 3 T11: 0.0337 T22: 0.0387 REMARK 3 T33: 0.1613 T12: 0.0081 REMARK 3 T13: 0.0066 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.7927 L22: 0.4326 REMARK 3 L33: 0.1350 L12: 0.1504 REMARK 3 L13: -0.1536 L23: -0.1945 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: 0.1657 S13: 0.0645 REMARK 3 S21: 0.0222 S22: 0.0164 S23: 0.0102 REMARK 3 S31: 0.0265 S32: -0.0145 S33: -0.0089 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MKW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9174 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24666 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 54.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.20800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 11.90 REMARK 200 R MERGE FOR SHELL (I) : 1.86200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: OBTAINED BY SEMET SAD PHASING REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG10,000 + 100 MM HEPES PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.42050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.08050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.77600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.08050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.42050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.77600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 120 REMARK 465 SER A 121 REMARK 465 LYS A 122 REMARK 465 SER B 118 REMARK 465 LEU B 119 REMARK 465 ALA B 120 REMARK 465 SER B 121 REMARK 465 LYS B 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 65 80.79 -162.91 REMARK 500 ASN B 65 81.64 -165.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 20 SG REMARK 620 2 CYS A 23 SG 106.6 REMARK 620 3 CYS A 96 SG 115.9 110.4 REMARK 620 4 CYS A 99 SG 107.5 115.7 101.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 20 SG REMARK 620 2 CYS B 23 SG 104.7 REMARK 620 3 CYS B 96 SG 117.0 111.3 REMARK 620 4 CYS B 99 SG 105.1 117.5 101.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 203 DBREF 5MKW A 3 122 UNP Q5FWF4 ZRAB3_HUMAN 948 1067 DBREF 5MKW B 3 122 UNP Q5FWF4 ZRAB3_HUMAN 948 1067 SEQADV 5MKW SER A 1 UNP Q5FWF4 EXPRESSION TAG SEQADV 5MKW MET A 2 UNP Q5FWF4 EXPRESSION TAG SEQADV 5MKW SER B 1 UNP Q5FWF4 EXPRESSION TAG SEQADV 5MKW MET B 2 UNP Q5FWF4 EXPRESSION TAG SEQRES 1 A 122 SER MET SER ASN ASN SER TYR LEU ARG ALA LYS VAL PHE SEQRES 2 A 122 GLU THR GLU HIS GLY VAL CYS GLN LEU CYS ASN VAL ASN SEQRES 3 A 122 ALA GLN GLU LEU PHE LEU ARG LEU ARG ASP ALA PRO LYS SEQRES 4 A 122 SER GLN ARG LYS ASN LEU LEU TYR ALA THR TRP THR SER SEQRES 5 A 122 LYS LEU PRO LEU GLU GLN LEU ASN GLU MET ILE ARG ASN SEQRES 6 A 122 PRO GLY GLU GLY HIS PHE TRP GLN VAL ASP HIS ILE LYS SEQRES 7 A 122 PRO VAL TYR GLY GLY GLY GLY GLN CYS SER LEU ASP ASN SEQRES 8 A 122 LEU GLN THR LEU CYS THR VAL CYS HIS LYS GLU ARG THR SEQRES 9 A 122 ALA ARG GLN ALA LYS GLU ARG SER GLN VAL ARG ARG GLN SEQRES 10 A 122 SER LEU ALA SER LYS SEQRES 1 B 122 SER MET SER ASN ASN SER TYR LEU ARG ALA LYS VAL PHE SEQRES 2 B 122 GLU THR GLU HIS GLY VAL CYS GLN LEU CYS ASN VAL ASN SEQRES 3 B 122 ALA GLN GLU LEU PHE LEU ARG LEU ARG ASP ALA PRO LYS SEQRES 4 B 122 SER GLN ARG LYS ASN LEU LEU TYR ALA THR TRP THR SER SEQRES 5 B 122 LYS LEU PRO LEU GLU GLN LEU ASN GLU MET ILE ARG ASN SEQRES 6 B 122 PRO GLY GLU GLY HIS PHE TRP GLN VAL ASP HIS ILE LYS SEQRES 7 B 122 PRO VAL TYR GLY GLY GLY GLY GLN CYS SER LEU ASP ASN SEQRES 8 B 122 LEU GLN THR LEU CYS THR VAL CYS HIS LYS GLU ARG THR SEQRES 9 B 122 ALA ARG GLN ALA LYS GLU ARG SER GLN VAL ARG ARG GLN SEQRES 10 B 122 SER LEU ALA SER LYS HET ZN A 201 1 HET GOL A 202 6 HET GOL A 203 6 HET ZN B 201 1 HET GOL B 202 6 HET GOL B 203 6 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 GOL 4(C3 H8 O3) FORMUL 9 HOH *232(H2 O) HELIX 1 AA1 ASN A 4 HIS A 17 1 14 HELIX 2 AA2 ASN A 26 ALA A 37 1 12 HELIX 3 AA3 PRO A 38 ALA A 48 1 11 HELIX 4 AA4 THR A 49 LEU A 54 5 6 HELIX 5 AA5 PRO A 55 ASN A 65 1 11 HELIX 6 AA6 GLY A 67 HIS A 70 5 4 HELIX 7 AA7 SER A 88 ASP A 90 5 3 HELIX 8 AA8 THR A 97 LEU A 119 1 23 HELIX 9 AA9 ASN B 4 HIS B 17 1 14 HELIX 10 AB1 ASN B 26 ALA B 37 1 12 HELIX 11 AB2 PRO B 38 ALA B 48 1 11 HELIX 12 AB3 THR B 49 LEU B 54 5 6 HELIX 13 AB4 PRO B 55 ASN B 65 1 11 HELIX 14 AB5 GLY B 67 HIS B 70 5 4 HELIX 15 AB6 SER B 88 ASP B 90 5 3 HELIX 16 AB7 THR B 97 GLN B 117 1 21 SHEET 1 AA1 2 TRP A 72 HIS A 76 0 SHEET 2 AA1 2 LEU A 92 CYS A 96 -1 O GLN A 93 N ASP A 75 SHEET 1 AA2 2 TRP B 72 HIS B 76 0 SHEET 2 AA2 2 LEU B 92 CYS B 96 -1 O LEU B 95 N GLN B 73 LINK SG CYS A 20 ZN ZN A 201 1555 1555 2.36 LINK SG CYS A 23 ZN ZN A 201 1555 1555 2.31 LINK SG CYS A 96 ZN ZN A 201 1555 1555 2.36 LINK SG CYS A 99 ZN ZN A 201 1555 1555 2.30 LINK SG CYS B 20 ZN ZN B 201 1555 1555 2.35 LINK SG CYS B 23 ZN ZN B 201 1555 1555 2.32 LINK SG CYS B 96 ZN ZN B 201 1555 1555 2.37 LINK SG CYS B 99 ZN ZN B 201 1555 1555 2.34 SITE 1 AC1 4 CYS A 20 CYS A 23 CYS A 96 CYS A 99 SITE 1 AC2 9 ARG A 35 ASP A 36 ALA A 37 PRO A 38 SITE 2 AC2 9 ARG A 42 HOH A 309 HOH A 339 ASN B 4 SITE 3 AC2 9 TYR B 7 SITE 1 AC3 7 ASN A 4 TYR A 7 HOH A 311 ARG B 35 SITE 2 AC3 7 ASP B 36 ALA B 37 ARG B 42 SITE 1 AC4 4 CYS B 20 CYS B 23 CYS B 96 CYS B 99 SITE 1 AC5 5 PHE B 13 GLN B 28 GLU B 68 HOH B 327 SITE 2 AC5 5 HOH B 383 SITE 1 AC6 5 GLY B 67 GLU B 68 GLY B 69 HIS B 70 SITE 2 AC6 5 HOH B 380 CRYST1 56.841 67.552 92.161 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017593 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014803 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010851 0.00000