HEADER OXIDOREDUCTASE 07-DEC-16 5MLN TITLE THE CRYSTAL STRUCTURE OF ALCOHOL DEHYDROGENASE 10 FROM CANDIDA TITLE 2 MAGNOLIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE 3; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA MAGNOLIAE; SOURCE 3 ORGANISM_TAXID: 5490; SOURCE 4 GENE: ADH3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH1; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 536056 KEYWDS SHORT-CHAIN ALCOHOL DEHYDROGENASE, NADP, 4-HYDROXY-ALPHA-ISOPHORONE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.G.CASTELLANOS,A.MATTEVI REVDAT 4 17-JAN-24 5MLN 1 REMARK REVDAT 3 22-APR-20 5MLN 1 REMARK REVDAT 2 03-JUL-19 5MLN 1 JRNL REVDAT 1 20-DEC-17 5MLN 0 JRNL AUTH M.TAVANTI,F.PARMEGGIANI,J.R.G.CASTELLANOS,A.MATTEVI, JRNL AUTH 2 N.J.TURNER JRNL TITL ONE-POT BIOCATALYTIC DOUBLE OXIDATION OF ALPHA-ISOPHORONE JRNL TITL 2 FOR THE SYNTHESIS OF KETOISOPHORONE JRNL REF CHEMCATCHEM 2017 JRNL REFN ESSN 1867-3899 JRNL DOI 10.1002/CCTC.201700620 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 61925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3247 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4491 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 234 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3517 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 381 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : 1.16000 REMARK 3 B33 (A**2) : -0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.395 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3722 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3520 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5075 ; 2.292 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8181 ; 1.164 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 477 ; 7.144 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;43.842 ;25.522 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 590 ;14.126 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.303 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 594 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4081 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 677 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1902 ; 2.209 ; 1.944 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1901 ; 2.200 ; 1.943 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2375 ; 3.113 ; 2.908 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2376 ; 3.116 ; 2.908 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1820 ; 3.900 ; 2.375 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1820 ; 3.900 ; 2.375 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2699 ; 5.735 ; 3.373 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4135 ;10.056 ;25.662 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4136 ;10.054 ;25.671 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5MLN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002654. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.872899 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65173 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.77900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3V2G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES PH 6.5, 40% PEG 200. SOAKED REMARK 280 20MM 4R-HYDROXYISOPHORONE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.08900 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.26000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.08900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.26000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 415 O HOH B 419 1.00 REMARK 500 O HOH A 413 O HOH A 431 1.18 REMARK 500 O HOH B 421 O HOH B 469 1.20 REMARK 500 C ALA B 241 O HOH B 402 1.20 REMARK 500 O SER A 129 O HOH A 401 1.29 REMARK 500 O HOH A 475 O HOH A 558 1.33 REMARK 500 C SER A 129 O HOH A 401 1.33 REMARK 500 O HOH B 422 O HOH B 538 1.35 REMARK 500 N GLU A 130 O HOH A 401 1.40 REMARK 500 O HOH A 500 O HOH A 564 1.42 REMARK 500 O HOH B 431 O HOH B 579 1.45 REMARK 500 O HOH B 411 O HOH B 484 1.48 REMARK 500 O HOH A 516 O HOH A 547 1.49 REMARK 500 CA GLU A 130 O HOH A 401 1.51 REMARK 500 O HOH B 441 O HOH B 538 1.52 REMARK 500 O HOH A 513 O HOH A 553 1.53 REMARK 500 O HOH B 488 O HOH B 559 1.54 REMARK 500 O HOH B 494 O HOH B 593 1.57 REMARK 500 O HOH B 526 O HOH B 592 1.58 REMARK 500 O HOH A 463 O HOH A 502 1.59 REMARK 500 O HOH A 524 O HOH A 533 1.59 REMARK 500 O HOH B 407 O HOH B 580 1.62 REMARK 500 O HOH B 523 O HOH B 588 1.62 REMARK 500 O HOH B 539 O HOH B 584 1.64 REMARK 500 O HOH A 562 O HOH B 435 1.65 REMARK 500 O HOH B 491 O HOH B 573 1.68 REMARK 500 O HOH A 409 O HOH A 526 1.71 REMARK 500 O HOH A 534 O HOH A 558 1.74 REMARK 500 O HOH A 557 O HOH A 559 1.77 REMARK 500 O HOH A 434 O HOH A 537 1.77 REMARK 500 O HOH A 487 O HOH A 550 1.82 REMARK 500 C GLU A 130 O HOH A 401 1.83 REMARK 500 O HOH A 422 O HOH A 487 1.83 REMARK 500 O HOH B 444 O HOH B 521 1.86 REMARK 500 O HOH A 492 O HOH A 518 1.86 REMARK 500 O HOH B 562 O HOH B 574 1.86 REMARK 500 O HOH A 459 O HOH A 488 1.94 REMARK 500 O HOH B 563 O HOH B 565 1.94 REMARK 500 O HOH A 435 O HOH B 504 1.97 REMARK 500 O HOH B 490 O HOH B 559 1.98 REMARK 500 O ALA B 241 O HOH B 401 1.99 REMARK 500 O HOH A 547 O HOH A 575 1.99 REMARK 500 OG SER A 129 O HOH A 402 2.03 REMARK 500 O ALA B 241 O HOH B 402 2.09 REMARK 500 O HOH A 539 O HOH A 554 2.09 REMARK 500 O HOH B 409 O HOH B 477 2.10 REMARK 500 OE1 GLU B 130 O HOH B 403 2.12 REMARK 500 O HOH B 439 O HOH B 552 2.12 REMARK 500 NZ LYS B 178 O HOH B 404 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 448 O HOH B 468 2555 1.26 REMARK 500 O HOH A 417 O HOH B 550 2555 1.54 REMARK 500 O HOH B 520 O HOH B 520 2555 1.70 REMARK 500 O HOH A 564 O HOH B 569 1556 1.92 REMARK 500 O HOH A 417 O HOH B 522 2555 1.96 REMARK 500 O HOH A 555 O HOH B 566 4575 2.08 REMARK 500 O HOH A 569 O HOH B 599 2555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 241 C ALA A 241 O 0.158 REMARK 500 TRP B 209 CG TRP B 209 CD1 0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 63 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 GLU B 174 OE1 - CD - OE2 ANGL. DEV. = -7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 35 -173.41 -171.56 REMARK 500 SER A 143 -133.92 -92.50 REMARK 500 ASP A 236 15.91 -140.93 REMARK 500 SER B 35 -178.98 -176.22 REMARK 500 LEU B 114 -58.42 -125.43 REMARK 500 SER B 129 -67.42 60.50 REMARK 500 LYS B 135 67.77 -151.06 REMARK 500 SER B 143 -139.26 -93.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 199 ALA A 200 126.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 302 DBREF 5MLN A 1 241 UNP B8K244 B8K244_9ASCO 1 241 DBREF 5MLN B 1 241 UNP B8K244 B8K244_9ASCO 1 241 SEQADV 5MLN ASN A 30 UNP B8K244 SER 30 CONFLICT SEQADV 5MLN ARG A 81 UNP B8K244 SER 81 CONFLICT SEQADV 5MLN VAL A 133 UNP B8K244 ALA 133 CONFLICT SEQADV 5MLN LYS A 135 UNP B8K244 ASN 135 CONFLICT SEQADV 5MLN ASN B 30 UNP B8K244 SER 30 CONFLICT SEQADV 5MLN ARG B 81 UNP B8K244 SER 81 CONFLICT SEQADV 5MLN VAL B 133 UNP B8K244 ALA 133 CONFLICT SEQADV 5MLN LYS B 135 UNP B8K244 ASN 135 CONFLICT SEQRES 1 A 241 MET THR THR THR SER ASN ALA LEU VAL THR GLY GLY SER SEQRES 2 A 241 ARG GLY ILE GLY ALA ALA SER ALA ILE LYS LEU ALA GLN SEQRES 3 A 241 GLU GLY TYR ASN VAL THR LEU ALA SER ARG SER VAL ASP SEQRES 4 A 241 LYS LEU ASN GLU VAL LYS ALA LYS LEU PRO ILE VAL GLN SEQRES 5 A 241 ASP GLY GLN LYS HIS TYR ILE TRP GLU LEU ASP LEU ALA SEQRES 6 A 241 ASP VAL GLU ALA ALA SER SER PHE LYS GLY ALA PRO LEU SEQRES 7 A 241 PRO ALA ARG SER TYR ASP VAL PHE VAL SER ASN ALA GLY SEQRES 8 A 241 VAL ALA ALA PHE SER PRO THR ALA ASP HIS ASP ASP LYS SEQRES 9 A 241 GLU TRP GLN ASN LEU LEU ALA VAL ASN LEU SER SER PRO SEQRES 10 A 241 ILE ALA LEU THR LYS ALA LEU LEU LYS ASP VAL SER GLU SEQRES 11 A 241 ARG PRO VAL ASP LYS PRO LEU GLN ILE ILE TYR ILE SER SEQRES 12 A 241 SER VAL ALA GLY LEU HIS GLY ALA ALA GLN VAL ALA VAL SEQRES 13 A 241 TYR SER ALA SER LYS ALA GLY LEU ASP GLY PHE MET ARG SEQRES 14 A 241 SER VAL ALA ARG GLU VAL GLY PRO LYS GLY ILE HIS VAL SEQRES 15 A 241 ASN SER ILE ASN PRO GLY TYR THR LYS THR GLU MET THR SEQRES 16 A 241 ALA GLY ILE GLU ALA LEU PRO ASP LEU PRO ILE LYS GLY SEQRES 17 A 241 TRP ILE GLU PRO GLU ALA ILE ALA ASP ALA VAL LEU PHE SEQRES 18 A 241 LEU ALA LYS SER LYS ASN ILE THR GLY THR ASN ILE VAL SEQRES 19 A 241 VAL ASP ASN GLY LEU ILE ALA SEQRES 1 B 241 MET THR THR THR SER ASN ALA LEU VAL THR GLY GLY SER SEQRES 2 B 241 ARG GLY ILE GLY ALA ALA SER ALA ILE LYS LEU ALA GLN SEQRES 3 B 241 GLU GLY TYR ASN VAL THR LEU ALA SER ARG SER VAL ASP SEQRES 4 B 241 LYS LEU ASN GLU VAL LYS ALA LYS LEU PRO ILE VAL GLN SEQRES 5 B 241 ASP GLY GLN LYS HIS TYR ILE TRP GLU LEU ASP LEU ALA SEQRES 6 B 241 ASP VAL GLU ALA ALA SER SER PHE LYS GLY ALA PRO LEU SEQRES 7 B 241 PRO ALA ARG SER TYR ASP VAL PHE VAL SER ASN ALA GLY SEQRES 8 B 241 VAL ALA ALA PHE SER PRO THR ALA ASP HIS ASP ASP LYS SEQRES 9 B 241 GLU TRP GLN ASN LEU LEU ALA VAL ASN LEU SER SER PRO SEQRES 10 B 241 ILE ALA LEU THR LYS ALA LEU LEU LYS ASP VAL SER GLU SEQRES 11 B 241 ARG PRO VAL ASP LYS PRO LEU GLN ILE ILE TYR ILE SER SEQRES 12 B 241 SER VAL ALA GLY LEU HIS GLY ALA ALA GLN VAL ALA VAL SEQRES 13 B 241 TYR SER ALA SER LYS ALA GLY LEU ASP GLY PHE MET ARG SEQRES 14 B 241 SER VAL ALA ARG GLU VAL GLY PRO LYS GLY ILE HIS VAL SEQRES 15 B 241 ASN SER ILE ASN PRO GLY TYR THR LYS THR GLU MET THR SEQRES 16 B 241 ALA GLY ILE GLU ALA LEU PRO ASP LEU PRO ILE LYS GLY SEQRES 17 B 241 TRP ILE GLU PRO GLU ALA ILE ALA ASP ALA VAL LEU PHE SEQRES 18 B 241 LEU ALA LYS SER LYS ASN ILE THR GLY THR ASN ILE VAL SEQRES 19 B 241 VAL ASP ASN GLY LEU ILE ALA HET NAP A 301 48 HET PEG A 302 7 HET PEG A 303 7 HET PEG A 304 7 HET NAP B 301 48 HET PEG B 302 7 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 PEG 4(C4 H10 O3) FORMUL 9 HOH *381(H2 O) HELIX 1 AA1 ARG A 14 GLU A 27 1 14 HELIX 2 AA2 SER A 37 LEU A 48 1 12 HELIX 3 AA3 ASP A 66 SER A 72 1 7 HELIX 4 AA4 PRO A 79 TYR A 83 5 5 HELIX 5 AA5 PRO A 97 HIS A 101 5 5 HELIX 6 AA6 ASP A 102 LEU A 114 1 13 HELIX 7 AA7 LEU A 114 VAL A 128 1 15 HELIX 8 AA8 SER A 144 LEU A 148 5 5 HELIX 9 AA9 VAL A 154 GLY A 176 1 23 HELIX 10 AB1 THR A 192 ALA A 196 5 5 HELIX 11 AB2 GLU A 211 LYS A 224 1 14 HELIX 12 AB3 ARG B 14 GLU B 27 1 14 HELIX 13 AB4 SER B 37 LEU B 48 1 12 HELIX 14 AB5 ASP B 66 PHE B 73 1 8 HELIX 15 AB6 PRO B 79 TYR B 83 5 5 HELIX 16 AB7 PRO B 97 HIS B 101 5 5 HELIX 17 AB8 ASP B 102 LEU B 114 1 13 HELIX 18 AB9 LEU B 114 SER B 129 1 16 HELIX 19 AC1 SER B 144 LEU B 148 5 5 HELIX 20 AC2 VAL B 154 GLY B 176 1 23 HELIX 21 AC3 THR B 192 ALA B 196 5 5 HELIX 22 AC4 GLU B 211 LYS B 224 1 14 SHEET 1 AA1 7 TYR A 58 GLU A 61 0 SHEET 2 AA1 7 ASN A 30 SER A 35 1 N VAL A 31 O TYR A 58 SHEET 3 AA1 7 ASN A 6 THR A 10 1 N ALA A 7 O THR A 32 SHEET 4 AA1 7 VAL A 85 SER A 88 1 O VAL A 87 N LEU A 8 SHEET 5 AA1 7 LEU A 137 ILE A 142 1 O ILE A 140 N PHE A 86 SHEET 6 AA1 7 ILE A 180 PRO A 187 1 O ILE A 185 N TYR A 141 SHEET 7 AA1 7 ASN A 232 VAL A 235 1 O ILE A 233 N ASN A 186 SHEET 1 AA2 7 TYR B 58 GLU B 61 0 SHEET 2 AA2 7 ASN B 30 SER B 35 1 N VAL B 31 O TYR B 58 SHEET 3 AA2 7 ASN B 6 THR B 10 1 N VAL B 9 O THR B 32 SHEET 4 AA2 7 VAL B 85 SER B 88 1 O VAL B 87 N LEU B 8 SHEET 5 AA2 7 LEU B 137 ILE B 142 1 O ILE B 142 N SER B 88 SHEET 6 AA2 7 ILE B 180 PRO B 187 1 O HIS B 181 N ILE B 139 SHEET 7 AA2 7 ASN B 232 VAL B 235 1 O ILE B 233 N ASN B 186 SITE 1 AC1 32 GLY A 11 SER A 13 ARG A 14 GLY A 15 SITE 2 AC1 32 ILE A 16 SER A 35 ARG A 36 SER A 37 SITE 3 AC1 32 LEU A 62 ASP A 63 LEU A 64 ASN A 89 SITE 4 AC1 32 ALA A 90 GLY A 91 VAL A 112 ILE A 142 SITE 5 AC1 32 SER A 143 SER A 144 TYR A 157 LYS A 161 SITE 6 AC1 32 PRO A 187 GLY A 188 TYR A 189 THR A 190 SITE 7 AC1 32 THR A 192 MET A 194 THR A 195 HOH A 418 SITE 8 AC1 32 HOH A 434 HOH A 436 HOH A 462 HOH A 481 SITE 1 AC2 3 ASP A 217 LEU A 220 LYS B 224 SITE 1 AC3 5 SER A 5 ASN A 6 HOH A 404 HOH A 405 SITE 2 AC3 5 GLU B 199 SITE 1 AC4 3 HOH A 403 HOH A 452 VAL B 234 SITE 1 AC5 33 GLY B 11 SER B 13 ARG B 14 GLY B 15 SITE 2 AC5 33 ILE B 16 SER B 35 ARG B 36 SER B 37 SITE 3 AC5 33 LEU B 62 ASP B 63 LEU B 64 ALA B 65 SITE 4 AC5 33 ASN B 89 ALA B 90 GLY B 91 ILE B 142 SITE 5 AC5 33 SER B 143 SER B 144 TYR B 157 LYS B 161 SITE 6 AC5 33 PRO B 187 GLY B 188 TYR B 189 THR B 190 SITE 7 AC5 33 THR B 192 GLU B 193 MET B 194 THR B 195 SITE 8 AC5 33 HOH B 414 HOH B 427 HOH B 438 HOH B 439 SITE 9 AC5 33 HOH B 445 SITE 1 AC6 5 LEU A 148 ARG A 169 LEU B 148 HOH B 444 SITE 2 AC6 5 HOH B 521 CRYST1 74.178 80.425 80.520 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013481 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012434 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012419 0.00000