HEADER HYDROLASE 08-DEC-16 5MLX TITLE OPEN LOOP CONFORMATION OF PHAZ7 Y105E MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHB DEPOLYMERASE PHAZ7; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: NO ELECTRON DENSITY FOR THE LAST C-TERMINAL RESIDUES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAUCIMONAS LEMOIGNEI; SOURCE 3 ORGANISM_TAXID: 29443; SOURCE 4 GENE: PHAZ7; SOURCE 5 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1423; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: WB800 KEYWDS DEPOLYMERASE, CONFORMATIONAL CHANGE, BIOPOLYMER DEGRADATION, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KELLICI,T.MAVROMOUSTAKOS,D.JENDROSSEK,A.C.PAPAGEORGIOU REVDAT 4 17-JAN-24 5MLX 1 REMARK REVDAT 3 17-JUL-19 5MLX 1 REMARK REVDAT 2 28-JUN-17 5MLX 1 JRNL REVDAT 1 10-MAY-17 5MLX 0 JRNL AUTH T.F.KELLICI,T.MAVROMOUSTAKOS,D.JENDROSSEK,A.C.PAPAGEORGIOU JRNL TITL CRYSTAL STRUCTURE ANALYSIS, COVALENT DOCKING, AND MOLECULAR JRNL TITL 2 DYNAMICS CALCULATIONS REVEAL A CONFORMATIONAL SWITCH IN JRNL TITL 3 PHAZ7 PHB DEPOLYMERASE. JRNL REF PROTEINS V. 85 1351 2017 JRNL REFN ESSN 1097-0134 JRNL PMID 28370478 JRNL DOI 10.1002/PROT.25296 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.JENDROSSEK,S.HERMAWAN,B.SUBEDI,A.C.PAPAGEORGIOU REMARK 1 TITL BIOCHEMICAL ANALYSIS AND STRUCTURE DETERMINATION OF REMARK 1 TITL 2 PAUCIMONAS LEMOIGNEI POLY(3-HYDROXYBUTYRATE) (PHB) REMARK 1 TITL 3 DEPOLYMERASE PHAZ7 MUTEINS REVEAL THE PHB BINDING SITE AND REMARK 1 TITL 4 DETAILS OF SUBSTRATE-ENZYME INTERACTIONS. REMARK 1 REF MOL. MICROBIOL. V. 90 649 2013 REMARK 1 REFN ESSN 1365-2958 REMARK 1 PMID 24007310 REMARK 1 DOI 10.1111/MMI.12391 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.C.PAPAGEORGIOU,S.HERMAWAN,C.B.SINGH,D.JENDROSSEK REMARK 1 TITL STRUCTURAL BASIS OF POLY(3-HYDROXYBUTYRATE) HYDROLYSIS BY REMARK 1 TITL 2 PHAZ7 DEPOLYMERASE FROM PAUCIMONAS LEMOIGNEI. REMARK 1 REF J. MOL. BIOL. V. 382 1184 2008 REMARK 1 REFN ESSN 1089-8638 REMARK 1 PMID 18706425 REMARK 1 DOI 10.1016/J.JMB.2008.07.078 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 3 NUMBER OF REFLECTIONS : 76716 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.127 REMARK 3 R VALUE (WORKING SET) : 0.126 REMARK 3 FREE R VALUE : 0.152 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.0845 - 4.7767 0.81 2489 131 0.1544 0.1508 REMARK 3 2 4.7767 - 3.7969 0.83 2531 133 0.1180 0.1274 REMARK 3 3 3.7969 - 3.3185 0.85 2601 137 0.1227 0.1314 REMARK 3 4 3.3185 - 3.0158 0.86 2613 137 0.1237 0.1668 REMARK 3 5 3.0158 - 2.8000 0.86 2616 138 0.1236 0.1699 REMARK 3 6 2.8000 - 2.6352 0.87 2648 139 0.1215 0.1296 REMARK 3 7 2.6352 - 2.5034 0.88 2690 142 0.1139 0.1564 REMARK 3 8 2.5034 - 2.3945 0.88 2671 141 0.1157 0.1259 REMARK 3 9 2.3945 - 2.3024 0.88 2667 140 0.1196 0.1392 REMARK 3 10 2.3024 - 2.2231 0.89 2706 143 0.1154 0.1361 REMARK 3 11 2.2231 - 2.1536 0.90 2772 145 0.1186 0.1664 REMARK 3 12 2.1536 - 2.0921 0.90 2724 144 0.1188 0.1528 REMARK 3 13 2.0921 - 2.0370 0.90 2704 142 0.1205 0.1549 REMARK 3 14 2.0370 - 1.9874 0.91 2796 147 0.1224 0.1550 REMARK 3 15 1.9874 - 1.9422 0.91 2703 142 0.1233 0.1476 REMARK 3 16 1.9422 - 1.9009 0.92 2835 150 0.1264 0.1628 REMARK 3 17 1.9009 - 1.8629 0.91 2725 143 0.1289 0.1488 REMARK 3 18 1.8629 - 1.8277 0.92 2837 149 0.1323 0.1745 REMARK 3 19 1.8277 - 1.7951 0.92 2702 143 0.1352 0.1683 REMARK 3 20 1.7951 - 1.7647 0.92 2842 149 0.1316 0.1747 REMARK 3 21 1.7647 - 1.7362 0.92 2777 146 0.1348 0.1714 REMARK 3 22 1.7362 - 1.7095 0.92 2795 148 0.1320 0.1684 REMARK 3 23 1.7095 - 1.6844 0.93 2864 150 0.1333 0.1569 REMARK 3 24 1.6844 - 1.6607 0.93 2766 146 0.1348 0.1857 REMARK 3 25 1.6607 - 1.6383 0.92 2809 148 0.1410 0.1754 REMARK 3 26 1.6383 - 1.6170 0.93 2828 148 0.1477 0.1759 REMARK 3 27 1.6170 - 1.5968 0.72 2169 115 0.1608 0.1844 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5189 REMARK 3 ANGLE : 0.882 7072 REMARK 3 CHIRALITY : 0.140 749 REMARK 3 PLANARITY : 0.006 915 REMARK 3 DIHEDRAL : 12.303 2981 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MLX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8123 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77568 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 23.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.13000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4BRS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4CL, O.1 M SODIUM ACETATE, 20% REMARK 280 PEG6000, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 99.75000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 344 REMARK 465 HIS A 345 REMARK 465 HIS A 346 REMARK 465 HIS A 347 REMARK 465 HIS A 348 REMARK 465 HIS A 349 REMARK 465 HIS A 350 REMARK 465 GLN B 282 REMARK 465 ALA B 283 REMARK 465 ASP B 284 REMARK 465 TYR B 285 REMARK 465 ASP B 286 REMARK 465 TRP B 287 REMARK 465 ALA B 288 REMARK 465 ASP B 289 REMARK 465 GLY B 290 REMARK 465 MET B 291 REMARK 465 PRO B 292 REMARK 465 TYR B 293 REMARK 465 LEU B 343 REMARK 465 GLU B 344 REMARK 465 HIS B 345 REMARK 465 HIS B 346 REMARK 465 HIS B 347 REMARK 465 HIS B 348 REMARK 465 HIS B 349 REMARK 465 HIS B 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 281 OG1 CG2 REMARK 470 ASN B 294 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 819 O HOH B 981 1.67 REMARK 500 O HOH A 1268 O HOH A 1346 1.82 REMARK 500 O HOH A 1003 O HOH A 1161 1.84 REMARK 500 O HOH A 1245 O HOH A 1288 1.84 REMARK 500 O HOH B 810 O HOH B 853 1.85 REMARK 500 O HOH B 505 O HOH B 764 1.91 REMARK 500 O HOH B 719 O HOH B 866 1.91 REMARK 500 O HOH B 748 O HOH B 854 1.94 REMARK 500 O HOH A 1021 O HOH A 1240 1.94 REMARK 500 O HOH B 871 O HOH B 967 1.94 REMARK 500 O HOH A 881 O HOH A 1171 1.97 REMARK 500 O HOH B 760 O HOH B 909 1.98 REMARK 500 O HOH A 1338 O HOH A 1389 2.00 REMARK 500 O HOH B 925 O HOH B 1018 2.00 REMARK 500 O HOH B 883 O HOH B 985 2.02 REMARK 500 O HOH B 885 O HOH B 1028 2.02 REMARK 500 O HOH A 1199 O HOH A 1213 2.03 REMARK 500 O HOH B 877 O HOH B 901 2.04 REMARK 500 O HOH B 861 O HOH B 864 2.04 REMARK 500 O HOH A 1102 O HOH A 1173 2.04 REMARK 500 O HOH B 693 O HOH B 941 2.06 REMARK 500 O HOH A 1015 O HOH A 1309 2.06 REMARK 500 O HOH A 984 O HOH A 1201 2.06 REMARK 500 O HOH B 872 O HOH B 901 2.07 REMARK 500 O HOH B 528 O HOH B 937 2.08 REMARK 500 O HOH A 1302 O HOH A 1340 2.08 REMARK 500 O HOH B 684 O HOH B 835 2.09 REMARK 500 ND2 ASN B 279 O HOH B 501 2.10 REMARK 500 O HOH A 1010 O HOH A 1136 2.10 REMARK 500 O HOH A 1043 O HOH A 1215 2.10 REMARK 500 O HOH A 804 O HOH A 980 2.10 REMARK 500 OE1 GLU A 333 O HOH A 801 2.11 REMARK 500 O HOH B 609 O HOH B 885 2.11 REMARK 500 O HOH A 872 O HOH A 1013 2.13 REMARK 500 O HOH A 888 O HOH A 1365 2.13 REMARK 500 O HOH A 837 O HOH A 892 2.14 REMARK 500 O HOH A 1281 O HOH A 1292 2.15 REMARK 500 O HOH B 658 O HOH B 725 2.16 REMARK 500 O HOH B 613 O HOH B 803 2.17 REMARK 500 O HOH B 590 O HOH B 722 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 821 O HOH A 918 1455 1.58 REMARK 500 O HOH A 844 O HOH B 522 2545 1.81 REMARK 500 O HOH B 898 O HOH B 951 1454 1.84 REMARK 500 O HOH A 823 O HOH B 512 1656 1.89 REMARK 500 O HOH A 1164 O HOH A 1172 1455 2.02 REMARK 500 O HOH B 764 O HOH B 915 1655 2.04 REMARK 500 O HOH A 984 O HOH A 1242 1454 2.06 REMARK 500 O HOH B 1016 O HOH B 1026 1554 2.12 REMARK 500 O HOH B 636 O HOH B 835 1655 2.12 REMARK 500 O HOH B 1024 O HOH B 1037 1655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B 274 CG1 - CB - CG2 ANGL. DEV. = 12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 9 -36.28 -134.25 REMARK 500 ALA A 23 88.38 -150.94 REMARK 500 SER A 136 -124.60 51.07 REMARK 500 ARG A 156 -62.28 -91.76 REMARK 500 ALA A 181 59.49 -154.10 REMARK 500 SER A 186 -157.76 -85.00 REMARK 500 ASN A 210 82.52 -154.16 REMARK 500 ALA B 23 84.73 -153.52 REMARK 500 SER B 136 -125.86 49.41 REMARK 500 ARG B 156 -62.19 -95.38 REMARK 500 ALA B 181 60.23 -155.06 REMARK 500 ASN B 210 83.14 -153.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1387 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1388 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1389 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1390 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1391 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A1392 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A1393 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A1394 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A1395 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A1396 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A1397 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH B1033 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B1034 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B1035 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B1036 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH B1037 DISTANCE = 7.62 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 703 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 41 OG1 REMARK 620 2 HOH A1130 O 129.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 704 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 921 O REMARK 620 2 HOH A 968 O 127.3 REMARK 620 3 HOH A1076 O 144.6 81.8 REMARK 620 4 HOH A1374 O 86.8 91.8 115.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 686 O REMARK 620 2 HOH B 826 O 44.3 REMARK 620 3 HOH B 834 O 80.6 124.9 REMARK 620 4 HOH B 844 O 130.4 131.7 79.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 402 DBREF 5MLX A 1 342 UNP Q939Q9 Q939Q9_PAULE 39 380 DBREF 5MLX B 1 342 UNP Q939Q9 Q939Q9_PAULE 39 380 SEQADV 5MLX GLU A 105 UNP Q939Q9 TYR 143 ENGINEERED MUTATION SEQADV 5MLX LEU A 343 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLX GLU A 344 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLX HIS A 345 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLX HIS A 346 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLX HIS A 347 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLX HIS A 348 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLX HIS A 349 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLX HIS A 350 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLX GLU B 105 UNP Q939Q9 TYR 143 ENGINEERED MUTATION SEQADV 5MLX LEU B 343 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLX GLU B 344 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLX HIS B 345 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLX HIS B 346 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLX HIS B 347 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLX HIS B 348 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLX HIS B 349 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLX HIS B 350 UNP Q939Q9 EXPRESSION TAG SEQRES 1 A 350 LEU THR CYS GLY THR ASN SER GLY PHE VAL CYS LYS GLY SEQRES 2 A 350 THR GLN THR GLN TYR ALA GLY GLY PHE ALA PRO GLY VAL SEQRES 3 A 350 GLY TYR GLY GLY PHE GLY GLY GLY SER CYS THR ALA THR SEQRES 4 A 350 LYS THR PRO VAL ILE PHE ILE HIS GLY ASN GLY ASP ASN SEQRES 5 A 350 ALA ILE SER PHE ASP MET PRO PRO GLY ASN VAL SER GLY SEQRES 6 A 350 TYR GLY THR PRO ALA ARG SER VAL TYR ALA GLU LEU LYS SEQRES 7 A 350 ALA ARG GLY TYR ASN ASP CYS GLU ILE PHE GLY VAL THR SEQRES 8 A 350 TYR LEU SER SER SER GLU GLN GLY SER ALA GLN TYR ASN SEQRES 9 A 350 GLU HIS SER SER THR LYS TYR ALA ILE ILE LYS THR PHE SEQRES 10 A 350 ILE ASP LYS VAL LYS ALA TYR THR GLY LYS SER GLN VAL SEQRES 11 A 350 ASP ILE VAL ALA HIS SER MET GLY VAL SER MET SER LEU SEQRES 12 A 350 ALA THR LEU GLN TYR TYR ASN ASN TRP THR SER VAL ARG SEQRES 13 A 350 LYS PHE ILE ASN LEU ALA GLY GLY ILE ARG GLY LEU TYR SEQRES 14 A 350 SER CYS TYR TYR THR GLY TYR ALA ASN ALA ALA ALA PRO SEQRES 15 A 350 THR CYS GLY SER GLN ASN TYR TYR ASN SER TYR THR PHE SEQRES 16 A 350 GLY PHE PHE PRO GLU GLY TRP TYR TYR GLY VAL TRP VAL SEQRES 17 A 350 SER ASN PRO TRP THR GLY SER GLY SER THR ASN SER MET SEQRES 18 A 350 ARG ASP MET PRO ALA LYS ARG THR ALA VAL SER PHE TYR SEQRES 19 A 350 THR LEU SER ALA GLY PHE LYS ASP GLN VAL GLY CYS ALA SEQRES 20 A 350 THR ALA SER PHE TRP ALA GLY CYS ASP SER ALA ALA LYS SEQRES 21 A 350 PHE ALA SER THR THR SER ASN VAL LYS ALA GLN ILE ASN SEQRES 22 A 350 VAL GLY ALA GLY SER ASN ALA THR GLN ALA ASP TYR ASP SEQRES 23 A 350 TRP ALA ASP GLY MET PRO TYR ASN ALA GLY GLY GLY ASP SEQRES 24 A 350 THR THR ASN GLY VAL GLY HIS PHE ARG THR LYS THR ASN SEQRES 25 A 350 THR GLY ALA ILE ILE GLN ARG MET LEU LEU THR THR CYS SEQRES 26 A 350 THR GLY LEU ASP CYS ALA ALA GLU TYR THR THR GLY PRO SEQRES 27 A 350 LYS ALA ALA TYR LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 350 LEU THR CYS GLY THR ASN SER GLY PHE VAL CYS LYS GLY SEQRES 2 B 350 THR GLN THR GLN TYR ALA GLY GLY PHE ALA PRO GLY VAL SEQRES 3 B 350 GLY TYR GLY GLY PHE GLY GLY GLY SER CYS THR ALA THR SEQRES 4 B 350 LYS THR PRO VAL ILE PHE ILE HIS GLY ASN GLY ASP ASN SEQRES 5 B 350 ALA ILE SER PHE ASP MET PRO PRO GLY ASN VAL SER GLY SEQRES 6 B 350 TYR GLY THR PRO ALA ARG SER VAL TYR ALA GLU LEU LYS SEQRES 7 B 350 ALA ARG GLY TYR ASN ASP CYS GLU ILE PHE GLY VAL THR SEQRES 8 B 350 TYR LEU SER SER SER GLU GLN GLY SER ALA GLN TYR ASN SEQRES 9 B 350 GLU HIS SER SER THR LYS TYR ALA ILE ILE LYS THR PHE SEQRES 10 B 350 ILE ASP LYS VAL LYS ALA TYR THR GLY LYS SER GLN VAL SEQRES 11 B 350 ASP ILE VAL ALA HIS SER MET GLY VAL SER MET SER LEU SEQRES 12 B 350 ALA THR LEU GLN TYR TYR ASN ASN TRP THR SER VAL ARG SEQRES 13 B 350 LYS PHE ILE ASN LEU ALA GLY GLY ILE ARG GLY LEU TYR SEQRES 14 B 350 SER CYS TYR TYR THR GLY TYR ALA ASN ALA ALA ALA PRO SEQRES 15 B 350 THR CYS GLY SER GLN ASN TYR TYR ASN SER TYR THR PHE SEQRES 16 B 350 GLY PHE PHE PRO GLU GLY TRP TYR TYR GLY VAL TRP VAL SEQRES 17 B 350 SER ASN PRO TRP THR GLY SER GLY SER THR ASN SER MET SEQRES 18 B 350 ARG ASP MET PRO ALA LYS ARG THR ALA VAL SER PHE TYR SEQRES 19 B 350 THR LEU SER ALA GLY PHE LYS ASP GLN VAL GLY CYS ALA SEQRES 20 B 350 THR ALA SER PHE TRP ALA GLY CYS ASP SER ALA ALA LYS SEQRES 21 B 350 PHE ALA SER THR THR SER ASN VAL LYS ALA GLN ILE ASN SEQRES 22 B 350 VAL GLY ALA GLY SER ASN ALA THR GLN ALA ASP TYR ASP SEQRES 23 B 350 TRP ALA ASP GLY MET PRO TYR ASN ALA GLY GLY GLY ASP SEQRES 24 B 350 THR THR ASN GLY VAL GLY HIS PHE ARG THR LYS THR ASN SEQRES 25 B 350 THR GLY ALA ILE ILE GLN ARG MET LEU LEU THR THR CYS SEQRES 26 B 350 THR GLY LEU ASP CYS ALA ALA GLU TYR THR THR GLY PRO SEQRES 27 B 350 LYS ALA ALA TYR LEU GLU HIS HIS HIS HIS HIS HIS HET CL A 701 1 HET CL A 702 1 HET NA A 703 1 HET NA A 704 1 HET NA A 705 1 HET NA B 401 1 HET NA B 402 1 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 3 CL 2(CL 1-) FORMUL 5 NA 5(NA 1+) FORMUL 10 HOH *1134(H2 O) HELIX 1 AA1 ASN A 52 MET A 58 5 7 HELIX 2 AA2 SER A 72 ARG A 80 1 9 HELIX 3 AA3 SER A 94 GLY A 99 1 6 HELIX 4 AA4 SER A 100 ASN A 104 5 5 HELIX 5 AA5 SER A 107 GLY A 126 1 20 HELIX 6 AA6 SER A 136 ASN A 150 1 15 HELIX 7 AA7 ASN A 151 THR A 153 5 3 HELIX 8 AA8 SER A 170 GLY A 175 1 6 HELIX 9 AA9 ALA A 181 GLY A 185 5 5 HELIX 10 AB1 SER A 220 ARG A 222 5 3 HELIX 11 AB2 ASP A 223 ARG A 228 1 6 HELIX 12 AB3 ALA A 238 ASP A 242 5 5 HELIX 13 AB4 ALA A 247 PHE A 251 5 5 HELIX 14 AB5 GLY A 254 ALA A 258 5 5 HELIX 15 AB6 THR A 281 ALA A 288 1 8 HELIX 16 AB7 GLY A 296 THR A 301 5 6 HELIX 17 AB8 PHE A 307 ASN A 312 1 6 HELIX 18 AB9 THR A 313 THR A 323 1 11 HELIX 19 AC1 THR A 326 ALA A 332 5 7 HELIX 20 AC2 ASN B 52 MET B 58 5 7 HELIX 21 AC3 SER B 72 ARG B 80 1 9 HELIX 22 AC4 SER B 94 GLY B 99 1 6 HELIX 23 AC5 SER B 100 ASN B 104 5 5 HELIX 24 AC6 SER B 107 GLY B 126 1 20 HELIX 25 AC7 SER B 136 ASN B 150 1 15 HELIX 26 AC8 ASN B 151 THR B 153 5 3 HELIX 27 AC9 SER B 170 GLY B 175 1 6 HELIX 28 AD1 ALA B 181 GLY B 185 5 5 HELIX 29 AD2 SER B 220 ARG B 222 5 3 HELIX 30 AD3 ASP B 223 ARG B 228 1 6 HELIX 31 AD4 ALA B 238 ASP B 242 5 5 HELIX 32 AD5 ALA B 247 PHE B 251 5 5 HELIX 33 AD6 GLY B 254 ALA B 258 5 5 HELIX 34 AD7 PHE B 307 ASN B 312 1 6 HELIX 35 AD8 THR B 313 THR B 323 1 11 HELIX 36 AD9 THR B 326 ALA B 332 5 7 SHEET 1 AA1 9 THR A 16 TYR A 18 0 SHEET 2 AA1 9 GLY A 30 GLY A 32 1 O GLY A 30 N GLN A 17 SHEET 3 AA1 9 ILE A 87 VAL A 90 -1 O GLY A 89 N PHE A 31 SHEET 4 AA1 9 VAL A 43 ILE A 46 1 N PHE A 45 O PHE A 88 SHEET 5 AA1 9 VAL A 130 HIS A 135 1 O ASP A 131 N ILE A 44 SHEET 6 AA1 9 VAL A 155 LEU A 161 1 O ILE A 159 N ILE A 132 SHEET 7 AA1 9 SER A 232 SER A 237 1 O TYR A 234 N ASN A 160 SHEET 8 AA1 9 VAL A 268 ASN A 273 1 O ILE A 272 N THR A 235 SHEET 9 AA1 9 ALA A 340 ALA A 341 -1 O ALA A 340 N ASN A 273 SHEET 1 AA2 2 GLY A 201 TYR A 203 0 SHEET 2 AA2 2 VAL A 206 VAL A 208 -1 O VAL A 206 N TYR A 203 SHEET 1 AA3 9 THR B 16 TYR B 18 0 SHEET 2 AA3 9 GLY B 30 GLY B 32 1 O GLY B 30 N GLN B 17 SHEET 3 AA3 9 ILE B 87 VAL B 90 -1 O GLY B 89 N PHE B 31 SHEET 4 AA3 9 VAL B 43 ILE B 46 1 N PHE B 45 O PHE B 88 SHEET 5 AA3 9 VAL B 130 HIS B 135 1 O ASP B 131 N ILE B 44 SHEET 6 AA3 9 VAL B 155 LEU B 161 1 O ILE B 159 N ILE B 132 SHEET 7 AA3 9 SER B 232 SER B 237 1 O TYR B 234 N ASN B 160 SHEET 8 AA3 9 VAL B 268 ASN B 273 1 O ILE B 272 N THR B 235 SHEET 9 AA3 9 ALA B 340 ALA B 341 -1 O ALA B 340 N ASN B 273 SHEET 1 AA4 2 GLY B 201 TYR B 203 0 SHEET 2 AA4 2 VAL B 206 VAL B 208 -1 O VAL B 208 N GLY B 201 SSBOND 1 CYS A 3 CYS A 11 1555 1555 2.04 SSBOND 2 CYS A 36 CYS A 85 1555 1555 2.05 SSBOND 3 CYS A 171 CYS A 184 1555 1555 2.04 SSBOND 4 CYS A 246 CYS A 255 1555 1555 2.06 SSBOND 5 CYS A 325 CYS A 330 1555 1555 2.03 SSBOND 6 CYS B 3 CYS B 11 1555 1555 2.06 SSBOND 7 CYS B 36 CYS B 85 1555 1555 2.04 SSBOND 8 CYS B 171 CYS B 184 1555 1555 2.05 SSBOND 9 CYS B 246 CYS B 255 1555 1555 2.05 SSBOND 10 CYS B 325 CYS B 330 1555 1555 2.03 LINK OG1 THR A 41 NA NA A 703 1555 1555 3.05 LINK NA NA A 703 O HOH A1130 1555 1555 2.03 LINK NA NA A 704 O HOH A 921 1555 1555 2.75 LINK NA NA A 704 O HOH A 968 1555 1555 2.67 LINK NA NA A 704 O HOH A1076 1555 1555 2.78 LINK NA NA A 704 O HOH A1374 1555 1555 3.02 LINK NA NA B 401 O HOH B 932 1555 1555 3.10 LINK NA NA B 402 O HOH B 686 1555 1555 2.95 LINK NA NA B 402 O HOH B 826 1555 1555 2.96 LINK NA NA B 402 O HOH B 834 1555 1555 3.09 LINK NA NA B 402 O HOH B 844 1555 1556 2.93 SITE 1 AC1 4 ALA A 23 PRO A 24 GLY A 25 HOH A1310 SITE 1 AC2 5 GLN A 15 SER A 95 THR A 326 LEU A 328 SITE 2 AC2 5 ASP A 329 SITE 1 AC3 3 THR A 41 GLN A 129 HOH A1130 SITE 1 AC4 5 PHE A 197 HOH A 921 HOH A 968 HOH A1076 SITE 2 AC4 5 HOH A1374 SITE 1 AC5 2 ASN A 83 ASP A 84 SITE 1 AC6 3 ALA B 23 PRO B 24 GLY B 25 SITE 1 AC7 7 THR B 326 LEU B 328 ASP B 329 HOH B 686 SITE 2 AC7 7 HOH B 826 HOH B 834 HOH B 844 CRYST1 41.300 199.500 44.400 90.00 114.20 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024213 0.000000 0.010882 0.00000 SCALE2 0.000000 0.005013 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024692 0.00000