HEADER HYDROLASE 08-DEC-16 5MLY TITLE CLOSED LOOP CONFORMATION OF PHAZ7 Y105E MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHB DEPOLYMERASE PHAZ7; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: NO ELECTRON DENSITY FOR THE LAST C-TER RESIDUES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAUCIMONAS LEMOIGNEI; SOURCE 3 ORGANISM_TAXID: 29443; SOURCE 4 GENE: PHAZ7; SOURCE 5 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1423; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: WB800 KEYWDS DEPOLYMERASE, CONFORMATIONAL CHANGE, BIOPOLYMER DEGRADATION, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KELLICI,T.MAVROMOUSTAKOS,D.JENDROSSEK,A.C.PAPAGEORGIOU REVDAT 4 17-JAN-24 5MLY 1 REMARK REVDAT 3 17-JUL-19 5MLY 1 REMARK REVDAT 2 28-JUN-17 5MLY 1 JRNL REVDAT 1 10-MAY-17 5MLY 0 JRNL AUTH T.F.KELLICI,T.MAVROMOUSTAKOS,D.JENDROSSEK,A.C.PAPAGEORGIOU JRNL TITL CRYSTAL STRUCTURE ANALYSIS, COVALENT DOCKING, AND MOLECULAR JRNL TITL 2 DYNAMICS CALCULATIONS REVEAL A CONFORMATIONAL SWITCH IN JRNL TITL 3 PHAZ7 PHB DEPOLYMERASE. JRNL REF PROTEINS V. 85 1351 2017 JRNL REFN ESSN 1097-0134 JRNL PMID 28370478 JRNL DOI 10.1002/PROT.25296 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.JENDROSSEK,S.HERMAWAN,B.SUBEDI,A.C.PAPAGEORGIOU REMARK 1 TITL BIOCHEMICAL ANALYSIS AND STRUCTURE DETERMINATION OF REMARK 1 TITL 2 PAUCIMONAS LEMOIGNEI POLY(3-HYDROXYBUTYRATE) (PHB) REMARK 1 TITL 3 DEPOLYMERASE PHAZ7 MUTEINS REVEAL THE PHB BINDING SITE AND REMARK 1 TITL 4 DETAILS OF SUBSTRATE-ENZYME INTERACTIONS. REMARK 1 REF MOL. MICROBIOL. V. 90 649 2013 REMARK 1 REFN ESSN 1365-2958 REMARK 1 PMID 24007310 REMARK 1 DOI 10.1111/MMI.12391 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.C.PAPAGEORGIOU,S.HERMAWAN,C.B.SINGH,D.JENDROSSEK REMARK 1 TITL STRUCTURAL BASIS OF POLY(3-HYDROXYBUTYRATE) HYDROLYSIS BY REMARK 1 TITL 2 PHAZ7 DEPOLYMERASE FROM PAUCIMONAS LEMOIGNEI. REMARK 1 REF J. MOL. BIOL. V. 382 1184 2008 REMARK 1 REFN ESSN 1089-8638 REMARK 1 PMID 18706425 REMARK 1 DOI 10.1016/J.JMB.2008.07.078 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 78327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.4214 - 4.8296 0.90 2630 144 0.1436 0.1435 REMARK 3 2 4.8296 - 3.8431 0.89 2588 143 0.1008 0.1093 REMARK 3 3 3.8431 - 3.3602 0.91 2656 143 0.1127 0.1473 REMARK 3 4 3.3602 - 3.0543 0.94 2759 149 0.1189 0.1441 REMARK 3 5 3.0543 - 2.8361 0.94 2740 135 0.1212 0.1377 REMARK 3 6 2.8361 - 2.6693 0.94 2745 150 0.1182 0.1320 REMARK 3 7 2.6693 - 2.5359 0.95 2740 144 0.1203 0.1604 REMARK 3 8 2.5359 - 2.4257 0.95 2712 139 0.1206 0.1617 REMARK 3 9 2.4257 - 2.3325 0.96 2801 144 0.1186 0.1370 REMARK 3 10 2.3325 - 2.2521 0.95 2774 150 0.1206 0.1655 REMARK 3 11 2.2521 - 2.1818 0.95 2708 135 0.1172 0.1694 REMARK 3 12 2.1818 - 2.1195 0.95 2771 157 0.1207 0.1388 REMARK 3 13 2.1195 - 2.0638 0.95 2740 145 0.1288 0.1598 REMARK 3 14 2.0638 - 2.0135 0.94 2757 142 0.1309 0.1688 REMARK 3 15 2.0135 - 1.9678 0.94 2733 137 0.1342 0.1504 REMARK 3 16 1.9678 - 1.9259 0.94 2715 140 0.1351 0.1820 REMARK 3 17 1.9259 - 1.8874 0.93 2676 144 0.1414 0.1794 REMARK 3 18 1.8874 - 1.8519 0.93 2722 145 0.1466 0.1879 REMARK 3 19 1.8519 - 1.8188 0.92 2664 143 0.1449 0.1814 REMARK 3 20 1.8188 - 1.7880 0.93 2657 134 0.1485 0.1918 REMARK 3 21 1.7880 - 1.7592 0.91 2666 143 0.1500 0.1803 REMARK 3 22 1.7592 - 1.7321 0.91 2619 138 0.1491 0.2222 REMARK 3 23 1.7321 - 1.7067 0.90 2611 134 0.1508 0.2193 REMARK 3 24 1.7067 - 1.6826 0.90 2631 139 0.1574 0.1921 REMARK 3 25 1.6826 - 1.6599 0.89 2554 128 0.1545 0.1918 REMARK 3 26 1.6599 - 1.6384 0.88 2579 128 0.1603 0.1885 REMARK 3 27 1.6384 - 1.6179 0.88 2555 132 0.1716 0.2203 REMARK 3 28 1.6179 - 1.5984 0.67 1915 104 0.1803 0.2129 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5253 REMARK 3 ANGLE : 0.878 7154 REMARK 3 CHIRALITY : 0.070 751 REMARK 3 PLANARITY : 0.006 928 REMARK 3 DIHEDRAL : 11.908 2996 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MLY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002615. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8123 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78330 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.598 REMARK 200 RESOLUTION RANGE LOW (A) : 19.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03000 REMARK 200 FOR THE DATA SET : 25.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.14000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4BRS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 0.1 M MES, 20% PEG6000, PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 99.88000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 343 REMARK 465 GLU A 344 REMARK 465 HIS A 345 REMARK 465 HIS A 346 REMARK 465 HIS A 347 REMARK 465 HIS A 348 REMARK 465 HIS A 349 REMARK 465 HIS A 350 REMARK 465 LEU B 343 REMARK 465 GLU B 344 REMARK 465 HIS B 345 REMARK 465 HIS B 346 REMARK 465 HIS B 347 REMARK 465 HIS B 348 REMARK 465 HIS B 349 REMARK 465 HIS B 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 499 O HOH B 677 1.57 REMARK 500 O HOH A 478 O HOH A 716 1.65 REMARK 500 O HOH A 404 O HOH A 737 1.65 REMARK 500 O HOH B 804 O HOH B 985 1.66 REMARK 500 O HOH A 808 O HOH A 950 1.69 REMARK 500 O HOH B 405 O HOH B 485 1.69 REMARK 500 O HOH B 431 O HOH B 704 1.70 REMARK 500 O HOH A 689 O HOH A 894 1.71 REMARK 500 O HOH A 930 O HOH B 948 1.78 REMARK 500 O TYR A 204 O HOH A 401 1.80 REMARK 500 O HOH B 1005 O HOH B 1010 1.82 REMARK 500 O HOH A 854 O HOH A 893 1.83 REMARK 500 O HOH A 728 O HOH A 901 1.83 REMARK 500 O HOH A 422 O HOH A 578 1.91 REMARK 500 O HOH A 700 O HOH A 808 1.93 REMARK 500 O HOH A 646 O HOH A 676 1.93 REMARK 500 O HOH A 521 O HOH A 737 1.94 REMARK 500 O HOH A 880 O HOH A 928 1.96 REMARK 500 O HOH B 735 O HOH B 858 1.97 REMARK 500 O HOH A 946 O HOH A 971 1.98 REMARK 500 O HOH A 700 O HOH A 950 2.00 REMARK 500 O HOH A 488 O HOH A 843 2.00 REMARK 500 O HOH A 910 O HOH A 962 2.01 REMARK 500 O HOH B 818 O HOH B 882 2.01 REMARK 500 O HOH B 817 O HOH B 844 2.01 REMARK 500 O HOH B 640 O HOH B 846 2.04 REMARK 500 O HOH B 812 O HOH B 963 2.05 REMARK 500 O HOH A 721 O HOH A 799 2.05 REMARK 500 O HOH B 912 O HOH B 962 2.06 REMARK 500 O HOH A 429 O HOH A 728 2.07 REMARK 500 O HOH B 638 O HOH B 779 2.07 REMARK 500 O HOH A 435 O HOH A 621 2.08 REMARK 500 O HOH A 855 O HOH A 916 2.09 REMARK 500 O HOH B 864 O HOH B 896 2.09 REMARK 500 O HOH A 683 O HOH B 794 2.09 REMARK 500 O HOH A 903 O HOH A 954 2.09 REMARK 500 O HOH B 704 O HOH B 755 2.10 REMARK 500 O HOH B 823 O HOH B 831 2.10 REMARK 500 O HOH A 800 O HOH A 940 2.11 REMARK 500 O HOH A 721 O HOH A 942 2.11 REMARK 500 O HOH B 623 O HOH B 778 2.13 REMARK 500 O HOH B 455 O HOH B 576 2.13 REMARK 500 O HOH A 705 O HOH A 741 2.16 REMARK 500 O HOH A 497 O HOH A 750 2.16 REMARK 500 O HOH A 637 O HOH A 883 2.17 REMARK 500 O HOH A 942 O HOH A 962 2.18 REMARK 500 OE1 GLU B 333 O HOH B 401 2.18 REMARK 500 OG1 THR B 39 O HOH B 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 858 O HOH B 951 1656 1.60 REMARK 500 O HOH A 842 O HOH A 947 1455 1.76 REMARK 500 O HOH A 878 O HOH B 877 2545 1.77 REMARK 500 O HOH B 615 O HOH B 750 1656 1.88 REMARK 500 O HOH A 566 O HOH A 823 1455 1.90 REMARK 500 O HOH B 874 O HOH B 987 1656 1.90 REMARK 500 O HOH A 872 O HOH B 755 1656 2.03 REMARK 500 O HOH B 735 O HOH B 951 1656 2.09 REMARK 500 O HOH A 415 O HOH B 609 1656 2.09 REMARK 500 O HOH B 618 O HOH B 774 1455 2.12 REMARK 500 O HOH A 581 O HOH A 786 1454 2.14 REMARK 500 O HOH B 629 O HOH B 870 1655 2.15 REMARK 500 O HOH B 839 O HOH B 917 1655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B 206 CG1 - CB - CG2 ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 23 83.38 -150.39 REMARK 500 SER A 136 -131.73 57.89 REMARK 500 ARG A 156 -62.10 -93.70 REMARK 500 ALA A 177 42.64 -140.07 REMARK 500 ALA A 181 64.46 -150.08 REMARK 500 SER A 186 -159.01 -83.10 REMARK 500 ASN A 210 83.89 -155.38 REMARK 500 ALA A 295 66.94 -104.70 REMARK 500 ALA B 23 87.31 -153.58 REMARK 500 SER B 136 -133.72 56.98 REMARK 500 ARG B 156 -60.33 -96.08 REMARK 500 ALA B 177 41.59 -141.91 REMARK 500 ALA B 181 64.24 -150.57 REMARK 500 SER B 186 -157.37 -83.70 REMARK 500 ASN B 210 80.92 -156.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 978 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 979 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A 980 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A 981 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A 982 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH A 983 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH A 984 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH A 985 DISTANCE = 7.30 ANGSTROMS REMARK 525 HOH A 986 DISTANCE = 7.98 ANGSTROMS REMARK 525 HOH A 987 DISTANCE = 7.98 ANGSTROMS REMARK 525 HOH A 988 DISTANCE = 8.35 ANGSTROMS REMARK 525 HOH A 989 DISTANCE = 8.69 ANGSTROMS REMARK 525 HOH B1003 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B1004 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B1005 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B1006 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B1007 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH B1008 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH B1009 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH B1010 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH B1011 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH B1012 DISTANCE = 8.05 ANGSTROMS REMARK 525 HOH B1013 DISTANCE = 8.10 ANGSTROMS DBREF 5MLY A 1 342 UNP Q939Q9 Q939Q9_PAULE 39 380 DBREF 5MLY B 1 342 UNP Q939Q9 Q939Q9_PAULE 39 380 SEQADV 5MLY GLU A 105 UNP Q939Q9 TYR 143 ENGINEERED MUTATION SEQADV 5MLY LEU A 343 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLY GLU A 344 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLY HIS A 345 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLY HIS A 346 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLY HIS A 347 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLY HIS A 348 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLY HIS A 349 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLY HIS A 350 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLY GLU B 105 UNP Q939Q9 TYR 143 ENGINEERED MUTATION SEQADV 5MLY LEU B 343 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLY GLU B 344 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLY HIS B 345 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLY HIS B 346 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLY HIS B 347 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLY HIS B 348 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLY HIS B 349 UNP Q939Q9 EXPRESSION TAG SEQADV 5MLY HIS B 350 UNP Q939Q9 EXPRESSION TAG SEQRES 1 A 350 LEU THR CYS GLY THR ASN SER GLY PHE VAL CYS LYS GLY SEQRES 2 A 350 THR GLN THR GLN TYR ALA GLY GLY PHE ALA PRO GLY VAL SEQRES 3 A 350 GLY TYR GLY GLY PHE GLY GLY GLY SER CYS THR ALA THR SEQRES 4 A 350 LYS THR PRO VAL ILE PHE ILE HIS GLY ASN GLY ASP ASN SEQRES 5 A 350 ALA ILE SER PHE ASP MET PRO PRO GLY ASN VAL SER GLY SEQRES 6 A 350 TYR GLY THR PRO ALA ARG SER VAL TYR ALA GLU LEU LYS SEQRES 7 A 350 ALA ARG GLY TYR ASN ASP CYS GLU ILE PHE GLY VAL THR SEQRES 8 A 350 TYR LEU SER SER SER GLU GLN GLY SER ALA GLN TYR ASN SEQRES 9 A 350 GLU HIS SER SER THR LYS TYR ALA ILE ILE LYS THR PHE SEQRES 10 A 350 ILE ASP LYS VAL LYS ALA TYR THR GLY LYS SER GLN VAL SEQRES 11 A 350 ASP ILE VAL ALA HIS SER MET GLY VAL SER MET SER LEU SEQRES 12 A 350 ALA THR LEU GLN TYR TYR ASN ASN TRP THR SER VAL ARG SEQRES 13 A 350 LYS PHE ILE ASN LEU ALA GLY GLY ILE ARG GLY LEU TYR SEQRES 14 A 350 SER CYS TYR TYR THR GLY TYR ALA ASN ALA ALA ALA PRO SEQRES 15 A 350 THR CYS GLY SER GLN ASN TYR TYR ASN SER TYR THR PHE SEQRES 16 A 350 GLY PHE PHE PRO GLU GLY TRP TYR TYR GLY VAL TRP VAL SEQRES 17 A 350 SER ASN PRO TRP THR GLY SER GLY SER THR ASN SER MET SEQRES 18 A 350 ARG ASP MET PRO ALA LYS ARG THR ALA VAL SER PHE TYR SEQRES 19 A 350 THR LEU SER ALA GLY PHE LYS ASP GLN VAL GLY CYS ALA SEQRES 20 A 350 THR ALA SER PHE TRP ALA GLY CYS ASP SER ALA ALA LYS SEQRES 21 A 350 PHE ALA SER THR THR SER ASN VAL LYS ALA GLN ILE ASN SEQRES 22 A 350 VAL GLY ALA GLY SER ASN ALA THR GLN ALA ASP TYR ASP SEQRES 23 A 350 TRP ALA ASP GLY MET PRO TYR ASN ALA GLY GLY GLY ASP SEQRES 24 A 350 THR THR ASN GLY VAL GLY HIS PHE ARG THR LYS THR ASN SEQRES 25 A 350 THR GLY ALA ILE ILE GLN ARG MET LEU LEU THR THR CYS SEQRES 26 A 350 THR GLY LEU ASP CYS ALA ALA GLU TYR THR THR GLY PRO SEQRES 27 A 350 LYS ALA ALA TYR LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 350 LEU THR CYS GLY THR ASN SER GLY PHE VAL CYS LYS GLY SEQRES 2 B 350 THR GLN THR GLN TYR ALA GLY GLY PHE ALA PRO GLY VAL SEQRES 3 B 350 GLY TYR GLY GLY PHE GLY GLY GLY SER CYS THR ALA THR SEQRES 4 B 350 LYS THR PRO VAL ILE PHE ILE HIS GLY ASN GLY ASP ASN SEQRES 5 B 350 ALA ILE SER PHE ASP MET PRO PRO GLY ASN VAL SER GLY SEQRES 6 B 350 TYR GLY THR PRO ALA ARG SER VAL TYR ALA GLU LEU LYS SEQRES 7 B 350 ALA ARG GLY TYR ASN ASP CYS GLU ILE PHE GLY VAL THR SEQRES 8 B 350 TYR LEU SER SER SER GLU GLN GLY SER ALA GLN TYR ASN SEQRES 9 B 350 GLU HIS SER SER THR LYS TYR ALA ILE ILE LYS THR PHE SEQRES 10 B 350 ILE ASP LYS VAL LYS ALA TYR THR GLY LYS SER GLN VAL SEQRES 11 B 350 ASP ILE VAL ALA HIS SER MET GLY VAL SER MET SER LEU SEQRES 12 B 350 ALA THR LEU GLN TYR TYR ASN ASN TRP THR SER VAL ARG SEQRES 13 B 350 LYS PHE ILE ASN LEU ALA GLY GLY ILE ARG GLY LEU TYR SEQRES 14 B 350 SER CYS TYR TYR THR GLY TYR ALA ASN ALA ALA ALA PRO SEQRES 15 B 350 THR CYS GLY SER GLN ASN TYR TYR ASN SER TYR THR PHE SEQRES 16 B 350 GLY PHE PHE PRO GLU GLY TRP TYR TYR GLY VAL TRP VAL SEQRES 17 B 350 SER ASN PRO TRP THR GLY SER GLY SER THR ASN SER MET SEQRES 18 B 350 ARG ASP MET PRO ALA LYS ARG THR ALA VAL SER PHE TYR SEQRES 19 B 350 THR LEU SER ALA GLY PHE LYS ASP GLN VAL GLY CYS ALA SEQRES 20 B 350 THR ALA SER PHE TRP ALA GLY CYS ASP SER ALA ALA LYS SEQRES 21 B 350 PHE ALA SER THR THR SER ASN VAL LYS ALA GLN ILE ASN SEQRES 22 B 350 VAL GLY ALA GLY SER ASN ALA THR GLN ALA ASP TYR ASP SEQRES 23 B 350 TRP ALA ASP GLY MET PRO TYR ASN ALA GLY GLY GLY ASP SEQRES 24 B 350 THR THR ASN GLY VAL GLY HIS PHE ARG THR LYS THR ASN SEQRES 25 B 350 THR GLY ALA ILE ILE GLN ARG MET LEU LEU THR THR CYS SEQRES 26 B 350 THR GLY LEU ASP CYS ALA ALA GLU TYR THR THR GLY PRO SEQRES 27 B 350 LYS ALA ALA TYR LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *1202(H2 O) HELIX 1 AA1 ASN A 52 MET A 58 5 7 HELIX 2 AA2 SER A 72 ARG A 80 1 9 HELIX 3 AA3 SER A 94 GLY A 99 1 6 HELIX 4 AA4 SER A 100 ASN A 104 5 5 HELIX 5 AA5 SER A 107 GLY A 126 1 20 HELIX 6 AA6 SER A 136 ASN A 150 1 15 HELIX 7 AA7 ASN A 151 THR A 153 5 3 HELIX 8 AA8 LEU A 168 TYR A 172 5 5 HELIX 9 AA9 ALA A 181 GLY A 185 5 5 HELIX 10 AB1 SER A 220 ARG A 222 5 3 HELIX 11 AB2 ASP A 223 ARG A 228 1 6 HELIX 12 AB3 ALA A 238 ASP A 242 5 5 HELIX 13 AB4 GLY A 254 ALA A 258 5 5 HELIX 14 AB5 ASP A 286 GLY A 290 5 5 HELIX 15 AB6 PHE A 307 ASN A 312 1 6 HELIX 16 AB7 THR A 313 THR A 323 1 11 HELIX 17 AB8 THR A 326 ALA A 332 5 7 HELIX 18 AB9 ASN B 52 MET B 58 5 7 HELIX 19 AC1 SER B 72 ARG B 80 1 9 HELIX 20 AC2 SER B 94 GLY B 99 1 6 HELIX 21 AC3 SER B 100 ASN B 104 5 5 HELIX 22 AC4 SER B 107 GLY B 126 1 20 HELIX 23 AC5 SER B 136 ASN B 150 1 15 HELIX 24 AC6 ASN B 151 THR B 153 5 3 HELIX 25 AC7 LEU B 168 TYR B 172 5 5 HELIX 26 AC8 ALA B 181 GLY B 185 5 5 HELIX 27 AC9 SER B 220 ARG B 222 5 3 HELIX 28 AD1 ASP B 223 ARG B 228 1 6 HELIX 29 AD2 ALA B 238 ASP B 242 5 5 HELIX 30 AD3 GLY B 254 ALA B 258 5 5 HELIX 31 AD4 ASP B 286 GLY B 290 5 5 HELIX 32 AD5 PHE B 307 ASN B 312 1 6 HELIX 33 AD6 THR B 313 THR B 323 1 11 HELIX 34 AD7 THR B 326 ALA B 332 5 7 SHEET 1 AA1 9 THR A 16 TYR A 18 0 SHEET 2 AA1 9 GLY A 30 GLY A 32 1 O GLY A 30 N GLN A 17 SHEET 3 AA1 9 ILE A 87 VAL A 90 -1 O GLY A 89 N PHE A 31 SHEET 4 AA1 9 VAL A 43 ILE A 46 1 N PHE A 45 O PHE A 88 SHEET 5 AA1 9 VAL A 130 HIS A 135 1 O ASP A 131 N ILE A 44 SHEET 6 AA1 9 VAL A 155 LEU A 161 1 O ILE A 159 N ILE A 132 SHEET 7 AA1 9 SER A 232 SER A 237 1 O TYR A 234 N ASN A 160 SHEET 8 AA1 9 VAL A 268 ASN A 273 1 O ILE A 272 N THR A 235 SHEET 9 AA1 9 ALA A 340 ALA A 341 -1 O ALA A 340 N ASN A 273 SHEET 1 AA2 2 GLY A 201 TYR A 203 0 SHEET 2 AA2 2 VAL A 206 VAL A 208 -1 O VAL A 206 N TYR A 203 SHEET 1 AA3 9 THR B 16 TYR B 18 0 SHEET 2 AA3 9 GLY B 30 GLY B 32 1 O GLY B 30 N GLN B 17 SHEET 3 AA3 9 ILE B 87 VAL B 90 -1 O GLY B 89 N PHE B 31 SHEET 4 AA3 9 VAL B 43 ILE B 46 1 N PHE B 45 O PHE B 88 SHEET 5 AA3 9 VAL B 130 HIS B 135 1 O ASP B 131 N ILE B 44 SHEET 6 AA3 9 VAL B 155 LEU B 161 1 O ILE B 159 N ILE B 132 SHEET 7 AA3 9 SER B 232 SER B 237 1 O TYR B 234 N ASN B 160 SHEET 8 AA3 9 VAL B 268 ASN B 273 1 O ILE B 272 N THR B 235 SHEET 9 AA3 9 ALA B 340 ALA B 341 -1 O ALA B 340 N ASN B 273 SHEET 1 AA4 2 GLY B 201 TYR B 203 0 SHEET 2 AA4 2 VAL B 206 VAL B 208 -1 O VAL B 206 N TYR B 203 SSBOND 1 CYS A 3 CYS A 11 1555 1555 2.04 SSBOND 2 CYS A 36 CYS A 85 1555 1555 2.04 SSBOND 3 CYS A 171 CYS A 184 1555 1555 2.03 SSBOND 4 CYS A 246 CYS A 255 1555 1555 2.06 SSBOND 5 CYS A 325 CYS A 330 1555 1555 2.03 SSBOND 6 CYS B 3 CYS B 11 1555 1555 2.04 SSBOND 7 CYS B 36 CYS B 85 1555 1555 2.04 SSBOND 8 CYS B 171 CYS B 184 1555 1555 2.03 SSBOND 9 CYS B 246 CYS B 255 1555 1555 2.06 SSBOND 10 CYS B 325 CYS B 330 1555 1555 2.03 CRYST1 41.410 199.760 43.960 90.00 114.17 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024149 0.000000 0.010838 0.00000 SCALE2 0.000000 0.005006 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024934 0.00000