HEADER MEMBRANE PROTEIN 08-DEC-16 5MM1 TITLE DOLICHYL PHOSPHATE MANNOSE SYNTHASE IN COMPLEX WITH GDP AND DOLICHYL TITLE 2 PHOSPHATE MANNOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOLICHOL MONOPHOSPHATE MANNOSE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: N-TERMINAL HEXA-HISTDINE TAG AND TEV PROTEASE CLEAVAGE COMPND 6 SITE PRECEDES THE PROTEIN SEQUENCES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS (STRAIN ATCC 43587 / DSM SOURCE 3 3638 / JCM 8422 / VC1); SOURCE 4 ORGANISM_TAXID: 186497; SOURCE 5 GENE: PF0058; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS DOLICHOL PHOSPHATE MANNOSE SYNTHASE, ENZYME, INTEGRAL MEMBRANE KEYWDS 2 PROTEIN, PROTEIN GLYCOSYLATION, PRODUCT COMPLEX, GDP, DOLICHYL KEYWDS 3 PHOSPHATE MANNOSE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.GANDINI,T.REICHENBACH,T.C.TAN,C.DIVNE REVDAT 2 17-JAN-24 5MM1 1 REMARK REVDAT 1 09-AUG-17 5MM1 0 JRNL AUTH R.GANDINI,T.REICHENBACH,T.C.TAN,C.DIVNE JRNL TITL STRUCTURAL BASIS FOR DOLICHYLPHOSPHATE MANNOSE BIOSYNTHESIS. JRNL REF NAT COMMUN V. 8 120 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28743912 JRNL DOI 10.1038/S41467-017-00187-2 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3934 - 6.2620 1.00 1363 155 0.1963 0.2502 REMARK 3 2 6.2620 - 4.9720 1.00 1295 146 0.2182 0.2648 REMARK 3 3 4.9720 - 4.3439 1.00 1294 137 0.1866 0.2533 REMARK 3 4 4.3439 - 3.9470 1.00 1272 149 0.1987 0.2426 REMARK 3 5 3.9470 - 3.6642 1.00 1272 137 0.2078 0.3129 REMARK 3 6 3.6642 - 3.4482 1.00 1259 142 0.2448 0.3423 REMARK 3 7 3.4482 - 3.2756 1.00 1250 138 0.2792 0.3653 REMARK 3 8 3.2756 - 3.1330 0.99 1261 133 0.3568 0.4580 REMARK 3 9 3.1330 - 3.0124 0.99 1235 144 0.3683 0.4336 REMARK 3 10 3.0124 - 2.9085 1.00 1284 126 0.3735 0.4443 REMARK 3 11 2.9085 - 2.8175 1.00 1241 144 0.3758 0.4703 REMARK 3 12 2.8175 - 2.7370 1.00 1243 142 0.3685 0.4320 REMARK 3 13 2.7370 - 2.6650 1.00 1258 131 0.3972 0.4589 REMARK 3 14 2.6650 - 2.5999 0.99 1226 149 0.4307 0.4869 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.520 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 42.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2966 REMARK 3 ANGLE : 1.217 4013 REMARK 3 CHIRALITY : 0.043 448 REMARK 3 PLANARITY : 0.005 480 REMARK 3 DIHEDRAL : 18.599 1162 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MM1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200001000. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19735 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 48.385 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 3.53500 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5MLZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM CHLORIDE, 0.1 M REMARK 280 TRISODIUM CITRATE (PH 5.5), 37% (V/V) PENTAERYTHRITOL REMARK 280 PROPOXYLATE (5/4 PO/OH), 50 MM HEPES (PH 7.5), 150 MM NACL, 10% REMARK 280 (V/V) GLYCEROL, 0.05% LDAO, 5 MM GDP-MANNOSE, 5 MM MGCL2, 0.25 REMARK 280 MM C55 DOLICHYL PHOSPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.38500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.38500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.05500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.27000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.05500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.27000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.38500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.05500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.27000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.38500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.05500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 72.27000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ARG A 202 REMARK 465 ALA A 203 REMARK 465 ARG A 204 REMARK 465 GLY A 205 REMARK 465 GLU A 206 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 2 C VAL A 3 N -0.214 REMARK 500 ARG A 131 C LYS A 132 N 0.173 REMARK 500 VAL A 170 C GLU A 171 N 0.163 REMARK 500 GLY A 176 C PHE A 177 N -0.194 REMARK 500 ILE A 179 C LEU A 180 N 0.256 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 2 O - C - N ANGL. DEV. = -10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 11 70.96 47.31 REMARK 500 LEU A 19 -70.85 -44.65 REMARK 500 ASP A 39 59.31 -92.41 REMARK 500 PRO A 42 71.20 -64.36 REMARK 500 SER A 53 8.96 -67.16 REMARK 500 PRO A 57 76.34 -64.38 REMARK 500 SER A 81 23.02 -149.48 REMARK 500 LEU A 92 15.84 84.77 REMARK 500 ASN A 126 27.19 49.27 REMARK 500 LYS A 262 -36.65 -38.46 REMARK 500 TRP A 284 -77.65 -128.90 REMARK 500 VAL A 348 -66.80 -133.94 REMARK 500 TRP A 350 53.23 -108.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MJC A 501 DBREF 5MM1 A 1 352 UNP Q8U4M3 Q8U4M3_PYRFU 1 352 SEQADV 5MM1 MET A -21 UNP Q8U4M3 INITIATING METHIONINE SEQADV 5MM1 HIS A -20 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM1 HIS A -19 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM1 HIS A -18 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM1 HIS A -17 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM1 HIS A -16 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM1 HIS A -15 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM1 SER A -14 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM1 SER A -13 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM1 GLY A -12 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM1 VAL A -11 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM1 ASP A -10 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM1 LEU A -9 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM1 GLY A -8 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM1 THR A -7 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM1 GLU A -6 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM1 ASN A -5 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM1 LEU A -4 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM1 TYR A -3 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM1 PHE A -2 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM1 GLN A -1 UNP Q8U4M3 EXPRESSION TAG SEQADV 5MM1 SER A 0 UNP Q8U4M3 EXPRESSION TAG SEQRES 1 A 374 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 374 GLY THR GLU ASN LEU TYR PHE GLN SER MET LYS VAL SER SEQRES 3 A 374 VAL ILE ILE PRO THR TYR ASN GLU ARG GLU ASN LEU GLU SEQRES 4 A 374 GLU LEU PHE SER ARG ILE ASP ASN ALA LEU GLN GLY LEU SEQRES 5 A 374 ASN TYR GLU ILE VAL VAL VAL ASP ASP ASP SER PRO ASP SEQRES 6 A 374 ARG THR TRP GLU LYS ALA GLN GLU LEU SER SER LYS TYR SEQRES 7 A 374 PRO VAL LYS VAL ILE ARG ARG THR LYS GLU LYS GLY LEU SEQRES 8 A 374 SER SER ALA VAL ILE ARG GLY PHE LYS GLU ALA SER GLY SEQRES 9 A 374 ASP VAL PHE VAL VAL MET ASP ALA ASP LEU GLN HIS PRO SEQRES 10 A 374 PRO GLU VAL ILE PRO LYS LEU ILE GLU ALA ILE LYS ASN SEQRES 11 A 374 GLY SER ASP ILE ALA ILE GLY SER ARG TYR VAL LYS GLY SEQRES 12 A 374 GLY LYS VAL GLU ASN TRP PRO PHE TYR ARG LYS LEU ILE SEQRES 13 A 374 SER LYS GLY ALA ILE MET VAL GLY ARG ILE ALA LEU PRO SEQRES 14 A 374 LYS ILE ARG ASP ILE LYS ASP PRO VAL SER GLY PHE PHE SEQRES 15 A 374 ALA LEU ARG LYS GLU VAL VAL GLU GLY VAL GLU LEU ASN SEQRES 16 A 374 PRO ILE GLY PHE LYS ILE LEU MET GLU ILE LEU ILE LYS SEQRES 17 A 374 GLY LYS TYR SER LYS VAL VAL GLU VAL PRO PHE THR PHE SEQRES 18 A 374 GLY ILE ARG ALA ARG GLY GLU SER LYS LEU LYS GLY LYS SEQRES 19 A 374 THR ILE PHE GLU TYR LEU ARG HIS ILE TYR ARG LEU MET SEQRES 20 A 374 LYS TRP GLU GLY GLU ILE ASP ARG ILE VAL LYS PHE SER SEQRES 21 A 374 ILE VAL GLY LEU SER GLY ILE LEU VAL ASN GLU GLY PHE SEQRES 22 A 374 LEU TRP LEU PHE VAL ASN LEU GLY ILE PRO LYS GLU ILE SEQRES 23 A 374 ALA VAL ILE PRO ALA VAL GLU LEU SER ILE LEU ASN ASN SEQRES 24 A 374 PHE PHE TRP ASN ASP ILE TRP THR PHE LYS ASP ILE ARG SEQRES 25 A 374 ARG GLY SER ILE PHE SER ARG LEU LEU LYS PHE HIS ILE SEQRES 26 A 374 ALA ALA LEU SER GLY ALA VAL VAL ASN PHE ILE VAL TYR SEQRES 27 A 374 TRP ILE LEU LEU PHE LEU GLY ILE HIS TYR LEU ILE ALA SEQRES 28 A 374 ASN LEU VAL GLY ILE VAL LEU SER PHE GLY VAL ARG TYR SEQRES 29 A 374 VAL ILE ASN ARG HIS VAL THR TRP ALA THR HET GDP A 500 28 HET MJC A 501 71 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MJC DOLICHYL PHOSPHATE MANNOSE FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 MJC C61 H103 O9 P HELIX 1 AA1 ASN A 15 LEU A 27 1 13 HELIX 2 AA2 ARG A 44 SER A 53 1 10 HELIX 3 AA3 GLY A 68 GLU A 79 1 12 HELIX 4 AA4 VAL A 98 ASN A 108 1 11 HELIX 5 AA5 PRO A 128 LEU A 146 1 19 HELIX 6 AA6 PRO A 147 ARG A 150 5 4 HELIX 7 AA7 GLU A 165 GLU A 168 5 4 HELIX 8 AA8 LYS A 178 GLY A 187 1 10 HELIX 9 AA9 GLY A 211 GLY A 229 1 19 HELIX 10 AB1 GLY A 229 ASN A 257 1 29 HELIX 11 AB2 PRO A 261 TRP A 284 1 24 HELIX 12 AB3 SER A 293 LEU A 322 1 30 HELIX 13 AB4 HIS A 325 VAL A 348 1 24 SHEET 1 AA1 7 VAL A 58 ARG A 62 0 SHEET 2 AA1 7 TYR A 32 ASP A 38 1 N VAL A 36 O LYS A 59 SHEET 3 AA1 7 VAL A 3 THR A 9 1 N VAL A 3 O GLU A 33 SHEET 4 AA1 7 VAL A 84 VAL A 87 1 O VAL A 86 N SER A 4 SHEET 5 AA1 7 PHE A 160 ARG A 163 -1 O PHE A 160 N VAL A 87 SHEET 6 AA1 7 ILE A 112 SER A 116 -1 N ALA A 113 O ALA A 161 SHEET 7 AA1 7 VAL A 192 PRO A 196 1 O VAL A 195 N ILE A 114 SHEET 1 AA2 2 LYS A 123 VAL A 124 0 SHEET 2 AA2 2 THR A 198 PHE A 199 1 O PHE A 199 N LYS A 123 SITE 1 AC1 11 PRO A 8 THR A 9 TYR A 10 GLU A 12 SITE 2 AC1 11 VAL A 37 ASP A 39 GLY A 68 LEU A 69 SITE 3 AC1 11 ASP A 89 ALA A 90 MJC A 501 SITE 1 AC2 20 ASP A 89 HIS A 94 ARG A 117 ARG A 131 SITE 2 AC2 20 ILE A 134 SER A 135 ALA A 138 MET A 140 SITE 3 AC2 20 VAL A 141 ALA A 145 VAL A 156 SER A 157 SITE 4 AC2 20 GLY A 158 LYS A 178 PHE A 199 ILE A 214 SITE 5 AC2 20 ILE A 318 GLY A 339 VAL A 340 GDP A 500 CRYST1 90.110 144.540 96.770 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011098 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006919 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010334 0.00000