HEADER ALLERGEN 12-DEC-16 5MMU TITLE NMR SOLUTION STRUCTURE OF THE MAJOR APPLE ALLERGEN MAL D 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR ALLERGEN MAL D 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALLERGEN MAL D I; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MALUS DOMESTICA; SOURCE 3 ORGANISM_COMMON: APPLE; SOURCE 4 ORGANISM_TAXID: 3750; SOURCE 5 GENE: MALD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS PR-10 PROTEIN APPLE ALLERGEN, ALLERGEN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.AHAMMER,S.GRUTSCH,A.S.KAMENIK,K.R.LIEDL,M.TOLLINGER REVDAT 5 15-MAY-24 5MMU 1 REMARK REVDAT 4 08-MAY-19 5MMU 1 REMARK REVDAT 3 06-SEP-17 5MMU 1 SHEET REVDAT 2 15-MAR-17 5MMU 1 JRNL REVDAT 1 15-FEB-17 5MMU 0 JRNL AUTH L.AHAMMER,S.GRUTSCH,A.S.KAMENIK,K.R.LIEDL,M.TOLLINGER JRNL TITL STRUCTURE OF THE MAJOR APPLE ALLERGEN MAL D 1. JRNL REF J. AGRIC. FOOD CHEM. V. 65 1606 2017 JRNL REFN ESSN 1520-5118 JRNL PMID 28161953 JRNL DOI 10.1021/ACS.JAFC.6B05752 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.AHAMMER,S.GRUTSCH,M.TOLLINGER REMARK 1 TITL NMR RESONANCE ASSIGNMENTS OF THE MAJOR APPLE ALLERGEN MAL D REMARK 1 TITL 2 1 REMARK 1 REF BIOMOL NMR ASSIGN V. 10 287 2016 REMARK 1 REFN ESSN 1874-270X REMARK 1 PMID 27165578 REMARK 1 DOI 10.1007/S12104-016-9685-8 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MMU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200001425. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 960 MBAR REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-99% 15N] MAL D 1, 10 REMARK 210 MM SODIUM PHOSPHATE, 11.2 MM L- REMARK 210 ASCORBIC ACID, 91% H2O/9% D2O; REMARK 210 0.5 MM [U-13C; U-15N] MAL D 1, REMARK 210 10 MM SODIUM PHOSPHATE, 7 MM L- REMARK 210 ASCORBIC ACID, 91% H2O/9% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-15C HSQC; REMARK 210 3D HNCO; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HCCH-TOCSY; 3D (H)CC(CO) REMARK 210 NH-TOCSY; 3D 1H-15N TOCSY; 3D 1H- REMARK 210 13N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DIRECT DRIVE; AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : AGILENT; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XPLOR-NIH 2.42, CCPNMR ANALYSIS, REMARK 210 NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 72 HG SER A 73 1.39 REMARK 500 O LEU A 145 HG SER A 148 1.45 REMARK 500 O GLY A 49 HG1 THR A 52 1.54 REMARK 500 O LEU A 91 HG1 THR A 92 1.55 REMARK 500 HG SER A 99 CE1 HIS A 118 1.59 REMARK 500 O ASP A 25 H ASN A 28 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 14 151.20 -47.67 REMARK 500 1 ASN A 28 -10.85 -140.50 REMARK 500 1 ALA A 34 64.10 -105.75 REMARK 500 1 ALA A 37 -77.19 -73.97 REMARK 500 1 ASP A 89 2.63 -61.79 REMARK 500 1 THR A 92 -127.04 46.94 REMARK 500 1 ILE A 125 162.39 -48.81 REMARK 500 1 HIS A 153 67.49 -156.32 REMARK 500 1 TYR A 157 6.06 54.51 REMARK 500 2 VAL A 23 -52.33 -129.70 REMARK 500 2 ALA A 34 65.23 -105.87 REMARK 500 2 ALA A 37 -71.94 -72.27 REMARK 500 2 ASN A 47 -5.15 -141.24 REMARK 500 2 ASP A 89 2.26 -61.94 REMARK 500 2 THR A 92 -126.15 49.61 REMARK 500 2 ILE A 125 161.15 -45.48 REMARK 500 2 HIS A 153 68.16 -154.11 REMARK 500 2 TYR A 157 7.19 55.83 REMARK 500 3 VAL A 23 -36.57 -136.10 REMARK 500 3 ALA A 34 64.53 -105.54 REMARK 500 3 ALA A 37 -76.54 -72.81 REMARK 500 3 ASP A 89 0.37 -61.70 REMARK 500 3 THR A 92 -126.31 47.36 REMARK 500 3 LYS A 97 149.02 -172.53 REMARK 500 3 ILE A 125 160.41 -45.42 REMARK 500 3 HIS A 153 66.30 -154.86 REMARK 500 3 TYR A 157 8.17 55.08 REMARK 500 4 ALA A 34 64.17 -105.29 REMARK 500 4 ALA A 37 -79.02 -70.54 REMARK 500 4 ASP A 89 2.06 -62.28 REMARK 500 4 THR A 92 -126.25 43.35 REMARK 500 4 LYS A 97 147.41 -170.79 REMARK 500 4 ILE A 125 159.97 -47.51 REMARK 500 4 HIS A 153 66.65 -155.14 REMARK 500 4 TYR A 157 6.47 55.15 REMARK 500 5 ALA A 34 63.61 -105.95 REMARK 500 5 ALA A 37 -75.13 -71.73 REMARK 500 5 ASP A 89 2.07 -61.06 REMARK 500 5 THR A 92 -126.80 47.19 REMARK 500 5 LYS A 97 149.08 -171.69 REMARK 500 5 ILE A 125 151.54 -49.16 REMARK 500 5 HIS A 153 66.81 -156.04 REMARK 500 5 ASP A 155 2.21 -68.36 REMARK 500 5 TYR A 157 4.76 52.34 REMARK 500 6 ALA A 34 71.13 -110.80 REMARK 500 6 ALA A 37 -82.00 -79.55 REMARK 500 6 ASP A 89 2.05 -62.16 REMARK 500 6 THR A 92 -126.49 45.85 REMARK 500 6 LYS A 97 146.83 -172.62 REMARK 500 6 ILE A 125 151.42 -47.50 REMARK 500 REMARK 500 THIS ENTRY HAS 169 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25968 RELATED DB: BMRB DBREF 5MMU A 1 158 UNP P43211 MAL11_MALDO 2 159 SEQRES 1 A 158 GLY VAL TYR THR PHE GLU ASN GLU PHE THR SER GLU ILE SEQRES 2 A 158 PRO PRO SER ARG LEU PHE LYS ALA PHE VAL LEU ASP ALA SEQRES 3 A 158 ASP ASN LEU ILE PRO LYS ILE ALA PRO GLN ALA ILE LYS SEQRES 4 A 158 GLN ALA GLU ILE LEU GLU GLY ASN GLY GLY PRO GLY THR SEQRES 5 A 158 ILE LYS LYS ILE THR PHE GLY GLU GLY SER GLN TYR GLY SEQRES 6 A 158 TYR VAL LYS HIS ARG ILE ASP SER ILE ASP GLU ALA SER SEQRES 7 A 158 TYR SER TYR SER TYR THR LEU ILE GLU GLY ASP ALA LEU SEQRES 8 A 158 THR ASP THR ILE GLU LYS ILE SER TYR GLU THR LYS LEU SEQRES 9 A 158 VAL ALA CYS GLY SER GLY SER THR ILE LYS SER ILE SER SEQRES 10 A 158 HIS TYR HIS THR LYS GLY ASN ILE GLU ILE LYS GLU GLU SEQRES 11 A 158 HIS VAL LYS VAL GLY LYS GLU LYS ALA HIS GLY LEU PHE SEQRES 12 A 158 LYS LEU ILE GLU SER TYR LEU LYS ASP HIS PRO ASP ALA SEQRES 13 A 158 TYR ASN HELIX 1 AA1 PRO A 15 VAL A 23 1 9 HELIX 2 AA2 ALA A 26 ILE A 33 1 8 HELIX 3 AA3 LYS A 128 HIS A 153 1 26 SHEET 1 AA1 7 VAL A 2 SER A 11 0 SHEET 2 AA1 7 GLY A 110 THR A 121 -1 O ILE A 113 N PHE A 9 SHEET 3 AA1 7 ILE A 95 CYS A 107 -1 N GLU A 101 O ILE A 116 SHEET 4 AA1 7 SER A 80 GLU A 87 -1 N LEU A 85 O ILE A 98 SHEET 5 AA1 7 TYR A 66 ILE A 74 -1 N ARG A 70 O THR A 84 SHEET 6 AA1 7 ILE A 53 THR A 57 -1 N LYS A 54 O HIS A 69 SHEET 7 AA1 7 GLN A 40 GLU A 45 -1 N LEU A 44 O ILE A 53 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1