HEADER HYDROLASE 13-DEC-16 5MNR TITLE THERMOLYSIN IN COMPLEX WITH INHIBITOR JC256 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 5 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS INHIBITOR, PHOSPHONAMIDATE, PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.CRAMER,S.G.KRIMMER,A.HEINE,G.KLEBE REVDAT 3 17-JAN-24 5MNR 1 LINK REVDAT 2 26-JUL-17 5MNR 1 REVDAT 1 21-JUN-17 5MNR 0 JRNL AUTH J.CRAMER,S.G.KRIMMER,A.HEINE,G.KLEBE JRNL TITL PAYING THE PRICE OF DESOLVATION IN SOLVENT-EXPOSED PROTEIN JRNL TITL 2 POCKETS: IMPACT OF DISTAL SOLUBILIZING GROUPS ON AFFINITY JRNL TITL 3 AND BINDING THERMODYNAMICS IN A SERIES OF THERMOLYSIN JRNL TITL 4 INHIBITORS. JRNL REF J. MED. CHEM. V. 60 5791 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28590130 JRNL DOI 10.1021/ACS.JMEDCHEM.7B00490 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 91748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.104 REMARK 3 R VALUE (WORKING SET) : 0.103 REMARK 3 FREE R VALUE : 0.127 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1762 - 3.8794 0.99 3181 168 0.1306 0.1436 REMARK 3 2 3.8794 - 3.0795 1.00 3011 159 0.1179 0.1400 REMARK 3 3 3.0795 - 2.6904 1.00 2992 157 0.1092 0.1476 REMARK 3 4 2.6904 - 2.4444 1.00 2957 156 0.1054 0.1385 REMARK 3 5 2.4444 - 2.2692 1.00 2950 155 0.1003 0.1091 REMARK 3 6 2.2692 - 2.1354 1.00 2930 154 0.1017 0.1187 REMARK 3 7 2.1354 - 2.0285 1.00 2928 155 0.0979 0.1115 REMARK 3 8 2.0285 - 1.9402 1.00 2923 153 0.0973 0.1177 REMARK 3 9 1.9402 - 1.8655 1.00 2914 154 0.0967 0.1165 REMARK 3 10 1.8655 - 1.8011 1.00 2911 153 0.0924 0.1028 REMARK 3 11 1.8011 - 1.7448 1.00 2895 152 0.0847 0.1218 REMARK 3 12 1.7448 - 1.6949 1.00 2899 153 0.0863 0.1305 REMARK 3 13 1.6949 - 1.6503 1.00 2885 152 0.0834 0.1115 REMARK 3 14 1.6503 - 1.6101 1.00 2901 152 0.0787 0.0897 REMARK 3 15 1.6101 - 1.5735 1.00 2868 151 0.0787 0.1049 REMARK 3 16 1.5735 - 1.5400 1.00 2898 153 0.0796 0.1046 REMARK 3 17 1.5400 - 1.5092 1.00 2890 152 0.0822 0.1185 REMARK 3 18 1.5092 - 1.4807 1.00 2864 151 0.0854 0.1191 REMARK 3 19 1.4807 - 1.4542 1.00 2878 151 0.0848 0.1228 REMARK 3 20 1.4542 - 1.4296 1.00 2878 152 0.0908 0.1058 REMARK 3 21 1.4296 - 1.4065 1.00 2871 151 0.0921 0.1333 REMARK 3 22 1.4065 - 1.3849 1.00 2867 151 0.0992 0.1527 REMARK 3 23 1.3849 - 1.3645 1.00 2874 151 0.0992 0.1278 REMARK 3 24 1.3645 - 1.3453 1.00 2865 151 0.1011 0.1210 REMARK 3 25 1.3453 - 1.3271 1.00 2857 150 0.1049 0.1378 REMARK 3 26 1.3271 - 1.3099 1.00 2882 152 0.1060 0.1516 REMARK 3 27 1.3099 - 1.2935 1.00 2849 150 0.1137 0.1349 REMARK 3 28 1.2935 - 1.2779 1.00 2876 151 0.1142 0.1397 REMARK 3 29 1.2779 - 1.2631 1.00 2865 151 0.1198 0.1437 REMARK 3 30 1.2631 - 1.2489 0.98 2801 147 0.1216 0.1439 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.060 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 8.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2624 REMARK 3 ANGLE : 1.150 3590 REMARK 3 CHIRALITY : 0.090 379 REMARK 3 PLANARITY : 0.009 477 REMARK 3 DIHEDRAL : 19.866 903 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MNR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002669. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91757 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.249 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 25.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 0.47800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8TLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9 M CSCL, 50 MM TRIS (PH 7.5), 50% REMARK 280 DMSO, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.51267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.02533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.26900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.78167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.75633 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.51267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 87.02533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 108.78167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.26900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.75633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E 633 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 812 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE E 1 CD1 REMARK 470 GLN E 128 CG CD OE1 NE2 REMARK 470 LYS E 182 CG CD CE NZ REMARK 470 LYS E 210 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP E 16 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER E 25 92.54 -160.16 REMARK 500 THR E 26 -59.24 69.85 REMARK 500 SER E 92 -173.34 60.21 REMARK 500 SER E 107 -164.08 62.22 REMARK 500 ASN E 111 52.49 -90.75 REMARK 500 THR E 152 -100.98 -116.45 REMARK 500 ASN E 159 -144.95 55.28 REMARK 500 THR E 194 73.58 43.59 REMARK 500 ILE E 232 -60.42 -105.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E 902 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH E 903 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH E 904 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH E 905 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH E 906 DISTANCE = 6.71 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 57 OD1 REMARK 620 2 ASP E 57 OD2 52.4 REMARK 620 3 ASP E 59 OD1 122.8 70.7 REMARK 620 4 GLN E 61 O 95.2 89.8 88.7 REMARK 620 5 HOH E 577 O 157.4 147.3 77.2 95.7 REMARK 620 6 HOH E 613 O 82.1 133.2 154.5 83.4 79.5 REMARK 620 7 HOH E 789 O 85.5 88.2 88.4 176.8 84.8 99.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 138 OD2 REMARK 620 2 GLU E 177 OE1 77.8 REMARK 620 3 GLU E 177 OE2 126.8 49.3 REMARK 620 4 ASP E 185 OD1 161.3 120.9 71.8 REMARK 620 5 GLU E 187 O 84.6 147.2 142.5 79.1 REMARK 620 6 GLU E 190 OE1 84.3 127.0 120.7 83.1 77.5 REMARK 620 7 GLU E 190 OE2 98.7 82.4 72.7 84.2 127.9 51.5 REMARK 620 8 HOH E 570 O 98.2 79.5 79.3 86.9 75.9 152.9 151.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 142 NE2 REMARK 620 2 HIS E 146 NE2 103.0 REMARK 620 3 GLU E 166 OE1 124.9 96.1 REMARK 620 4 JC2 E 409 O05 111.6 127.3 95.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 177 OE2 REMARK 620 2 ASN E 183 O 92.1 REMARK 620 3 ASP E 185 OD2 87.3 90.6 REMARK 620 4 GLU E 190 OE2 83.6 171.3 81.7 REMARK 620 5 HOH E 547 O 88.4 93.2 174.4 94.3 REMARK 620 6 HOH E 557 O 173.0 93.0 97.5 91.9 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR E 193 O REMARK 620 2 THR E 194 O 76.4 REMARK 620 3 THR E 194 OG1 76.8 71.7 REMARK 620 4 ILE E 197 O 154.0 79.5 104.7 REMARK 620 5 ASP E 200 OD1 123.3 133.9 73.5 81.0 REMARK 620 6 HOH E 606 O 82.5 151.4 121.9 116.2 74.1 REMARK 620 7 HOH E 774 O 87.0 82.8 152.3 80.4 133.9 77.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JC2 E 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD E 410 DBREF 5MNR E 1 316 UNP P00800 THER_BACTH 233 548 SEQRES 1 E 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 E 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 E 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASN GLY ILE SEQRES 4 E 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 E 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 E 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 E 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 E 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 E 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 E 316 SER GLN MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 E 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 E 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 E 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 E 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 E 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 E 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 E 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 E 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 E 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 E 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 E 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 E 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 E 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 E 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 E 316 VAL GLY VAL LYS HET ZN E 401 1 HET CA E 402 1 HET CA E 403 1 HET CA E 404 1 HET CA E 405 1 HET DMS E 406 4 HET DMS E 407 4 HET DMS E 408 4 HET JC2 E 409 31 HET MPD E 410 8 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM JC2 (2~{S})-4-AZANYL-2-[[(2~{S})-4-METHYL-2- HETNAM 2 JC2 [[OXIDANYL(PHENYLMETHOXYCARBONYLAMINOMETHYL) HETNAM 3 JC2 PHOSPHORYL]AMINO]PENTANOYL]AMINO]BUTANOIC ACID HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 ZN ZN 2+ FORMUL 3 CA 4(CA 2+) FORMUL 7 DMS 3(C2 H6 O S) FORMUL 10 JC2 C19 H31 N4 O7 P FORMUL 11 MPD C6 H14 O2 FORMUL 12 HOH *406(H2 O) HELIX 1 AA1 ALA E 64 TYR E 66 5 3 HELIX 2 AA2 ASP E 67 ASN E 89 1 23 HELIX 3 AA3 PRO E 132 GLY E 135 5 4 HELIX 4 AA4 GLY E 136 THR E 152 1 17 HELIX 5 AA5 GLN E 158 ASN E 181 1 24 HELIX 6 AA6 ASP E 207 GLY E 212 5 6 HELIX 7 AA7 HIS E 216 ARG E 220 5 5 HELIX 8 AA8 THR E 224 VAL E 230 1 7 HELIX 9 AA9 ASN E 233 GLY E 247 1 15 HELIX 10 AB1 GLY E 259 TYR E 274 1 16 HELIX 11 AB2 ASN E 280 GLY E 297 1 18 HELIX 12 AB3 SER E 300 VAL E 313 1 14 SHEET 1 AA1 5 ALA E 56 ASP E 57 0 SHEET 2 AA1 5 TYR E 28 TYR E 29 -1 N TYR E 28 O ASP E 57 SHEET 3 AA1 5 GLN E 17 TYR E 24 -1 N THR E 23 O TYR E 29 SHEET 4 AA1 5 THR E 4 ARG E 11 -1 N GLY E 8 O ILE E 20 SHEET 5 AA1 5 GLN E 61 PHE E 62 1 O PHE E 62 N VAL E 9 SHEET 1 AA2 3 GLN E 31 ASP E 32 0 SHEET 2 AA2 3 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 AA2 3 SER E 53 LEU E 54 -1 O SER E 53 N ASP E 43 SHEET 1 AA3 5 GLN E 31 ASP E 32 0 SHEET 2 AA3 5 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 AA3 5 ILE E 100 TYR E 106 1 O ILE E 100 N PHE E 40 SHEET 4 AA3 5 MET E 120 GLY E 123 1 O MET E 120 N ARG E 101 SHEET 5 AA3 5 ALA E 113 TRP E 115 -1 N PHE E 114 O VAL E 121 SHEET 1 AA4 2 GLU E 187 ILE E 188 0 SHEET 2 AA4 2 ARG E 203 SER E 204 -1 O ARG E 203 N ILE E 188 SHEET 1 AA5 2 GLY E 248 HIS E 250 0 SHEET 2 AA5 2 VAL E 253 VAL E 255 -1 O VAL E 255 N GLY E 248 LINK OD1 ASP E 57 CA CA E 403 1555 1555 2.38 LINK OD2 ASP E 57 CA CA E 403 1555 1555 2.56 LINK OD1 ASP E 59 CA CA E 403 1555 1555 2.38 LINK O GLN E 61 CA CA E 403 1555 1555 2.29 LINK OD2 ASP E 138 CA CA E 402 1555 1555 2.38 LINK NE2 HIS E 142 ZN ZN E 401 1555 1555 2.02 LINK NE2 HIS E 146 ZN ZN E 401 1555 1555 2.03 LINK OE1 GLU E 166 ZN ZN E 401 1555 1555 1.99 LINK OE1 GLU E 177 CA CA E 402 1555 1555 2.47 LINK OE2 GLU E 177 CA CA E 402 1555 1555 2.76 LINK OE2 GLU E 177 CA CA E 404 1555 1555 2.39 LINK O ASN E 183 CA CA E 404 1555 1555 2.29 LINK OD1 ASP E 185 CA CA E 402 1555 1555 2.49 LINK OD2 ASP E 185 CA CA E 404 1555 1555 2.32 LINK O GLU E 187 CA CA E 402 1555 1555 2.32 LINK OE1 GLU E 190 CA CA E 402 1555 1555 2.49 LINK OE2 GLU E 190 CA CA E 402 1555 1555 2.53 LINK OE2 GLU E 190 CA CA E 404 1555 1555 2.32 LINK O TYR E 193 CA CA E 405 1555 1555 2.38 LINK O THR E 194 CA CA E 405 1555 1555 2.42 LINK OG1 THR E 194 CA CA E 405 1555 1555 2.36 LINK O ILE E 197 CA CA E 405 1555 1555 2.30 LINK OD1 ASP E 200 CA CA E 405 1555 1555 2.37 LINK ZN ZN E 401 O05 JC2 E 409 1555 1555 1.99 LINK CA CA E 402 O HOH E 570 1555 1555 2.43 LINK CA CA E 403 O HOH E 577 1555 1555 2.41 LINK CA CA E 403 O HOH E 613 1555 1555 2.42 LINK CA CA E 403 O HOH E 789 1555 1555 2.35 LINK CA CA E 404 O HOH E 547 1555 1555 2.34 LINK CA CA E 404 O HOH E 557 1555 1555 2.30 LINK CA CA E 405 O HOH E 606 1555 1555 2.40 LINK CA CA E 405 O HOH E 774 1555 1555 2.44 CISPEP 1 LEU E 50 PRO E 51 0 4.23 SITE 1 AC1 4 HIS E 142 HIS E 146 GLU E 166 JC2 E 409 SITE 1 AC2 6 ASP E 138 GLU E 177 ASP E 185 GLU E 187 SITE 2 AC2 6 GLU E 190 HOH E 570 SITE 1 AC3 6 ASP E 57 ASP E 59 GLN E 61 HOH E 577 SITE 2 AC3 6 HOH E 613 HOH E 789 SITE 1 AC4 6 GLU E 177 ASN E 183 ASP E 185 GLU E 190 SITE 2 AC4 6 HOH E 547 HOH E 557 SITE 1 AC5 6 TYR E 193 THR E 194 ILE E 197 ASP E 200 SITE 2 AC5 6 HOH E 606 HOH E 774 SITE 1 AC6 6 TYR E 66 HIS E 216 SER E 218 TYR E 251 SITE 2 AC6 6 HOH E 608 HOH E 868 SITE 1 AC7 4 THR E 2 GLY E 3 GLN E 31 ASN E 33 SITE 1 AC8 4 GLY E 259 ARG E 260 ASP E 261 HOH E 529 SITE 1 AC9 19 ASN E 111 ASN E 112 ALA E 113 ASN E 116 SITE 2 AC9 19 HIS E 142 GLU E 143 HIS E 146 TYR E 157 SITE 3 AC9 19 GLU E 166 LEU E 202 ARG E 203 HIS E 231 SITE 4 AC9 19 ZN E 401 MPD E 410 HOH E 532 HOH E 539 SITE 5 AC9 19 HOH E 591 HOH E 600 HOH E 671 SITE 1 AD1 5 TYR E 110 ASN E 227 JC2 E 409 HOH E 810 SITE 2 AD1 5 HOH E 826 CRYST1 92.735 92.735 130.538 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010783 0.006226 0.000000 0.00000 SCALE2 0.000000 0.012452 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007661 0.00000