HEADER IMMUNE SYSTEM 14-DEC-16 5MO9 TITLE STRUCTURE OF HUMAN TRKB RECEPTOR LIGAND BINDING DOMAIN IN COMPLEX WITH TITLE 2 THE FAB FRGMENT OF ANTIBODY AB20 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AB20 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: AB20 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: BDNF/NT-3 GROWTH FACTORS RECEPTOR; COMPND 11 CHAIN: X; COMPND 12 SYNONYM: GP145-TRKB,TRK-B,NEUROTROPHIC TYROSINE KINASE RECEPTOR TYPE COMPND 13 2,TRKB TYROSINE KINASE,TROPOMYOSIN-RELATED KINASE B; COMPND 14 EC: 2.7.10.1; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: FRAGMENT: LIGAND BINDING DOMAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: CHO; SOURCE 9 EXPRESSION_SYSTEM_ORGAN: OVARY; SOURCE 10 EXPRESSION_SYSTEM_TISSUE: EPITHELIUM; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 ORGAN: OVARY; SOURCE 16 TISSUE: EPITHELIUM; SOURCE 17 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 18 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: CHO; SOURCE 21 EXPRESSION_SYSTEM_ORGAN: OVARY; SOURCE 22 EXPRESSION_SYSTEM_TISSUE: EPITHELIUM; SOURCE 23 MOL_ID: 3; SOURCE 24 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 25 ORGANISM_COMMON: HUMAN; SOURCE 26 ORGANISM_TAXID: 9606; SOURCE 27 GENE: NTRK2, TRKB; SOURCE 28 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 29 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 30 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 31 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TRK RECEPTOR, ANTIBODY, ANTIGEN, COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.HOERER REVDAT 3 17-JAN-24 5MO9 1 REMARK REVDAT 2 03-APR-19 5MO9 1 SOURCE REVDAT 1 02-AUG-17 5MO9 0 JRNL AUTH S.TRAUB,H.STAHL,H.ROSENBROCK,E.SIMON,L.FLORIN,L.HOSPACH, JRNL AUTH 2 S.HORER,R.HEILKER JRNL TITL PHARMACEUTICAL CHARACTERIZATION OF TROPOMYOSIN RECEPTOR JRNL TITL 2 KINASE B-AGONISTIC ANTIBODIES ON HUMAN INDUCED PLURIPOTENT JRNL TITL 3 STEM (HIPS) CELL-DERIVED NEURONS. JRNL REF J. PHARMACOL. EXP. THER. V. 361 355 2017 JRNL REFN ESSN 1521-0103 JRNL PMID 28351853 JRNL DOI 10.1124/JPET.117.240184 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 18392 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.650 REMARK 3 FREE R VALUE TEST SET COUNT : 855 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.21 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 6.68 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 295 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2290 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 284 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE : 0.3850 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.73 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4091 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.75720 REMARK 3 B22 (A**2) : -0.96880 REMARK 3 B33 (A**2) : 2.72600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.310 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.513 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.254 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.466 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.253 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4299 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5878 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1404 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 89 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 632 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4299 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 571 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 12 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : 4 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4703 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.79 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.79 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { H|1 H|114 } REMARK 3 ORIGIN FOR THE GROUP (A): -51.8383 5.5102 -20.7023 REMARK 3 T TENSOR REMARK 3 T11: 0.0173 T22: -0.0006 REMARK 3 T33: -0.0048 T12: -0.0082 REMARK 3 T13: 0.0097 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 0.1391 L22: 0.0131 REMARK 3 L33: 0.7580 L12: 0.2716 REMARK 3 L13: -0.9361 L23: -0.2994 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: 0.0180 S13: -0.0203 REMARK 3 S21: -0.0091 S22: -0.0057 S23: 0.0058 REMARK 3 S31: 0.0131 S32: 0.0028 S33: 0.0039 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { H|120 H|217 } REMARK 3 ORIGIN FOR THE GROUP (A): -25.1901 23.1004 -32.2042 REMARK 3 T TENSOR REMARK 3 T11: -0.0012 T22: 0.0113 REMARK 3 T33: 0.0112 T12: -0.0024 REMARK 3 T13: 0.0005 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.1095 L22: 0.3282 REMARK 3 L33: 0.2681 L12: 0.1227 REMARK 3 L13: 0.4220 L23: 0.4506 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: -0.0021 S13: -0.0008 REMARK 3 S21: 0.0133 S22: 0.0039 S23: 0.0146 REMARK 3 S31: -0.0026 S32: -0.0036 S33: -0.0038 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { L|1 L|111 } REMARK 3 ORIGIN FOR THE GROUP (A): -36.8270 -2.7568 -4.7875 REMARK 3 T TENSOR REMARK 3 T11: 0.0024 T22: -0.0009 REMARK 3 T33: 0.0317 T12: 0.0098 REMARK 3 T13: -0.0019 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.1743 L22: 1.1006 REMARK 3 L33: 0.0439 L12: 0.0817 REMARK 3 L13: 0.2193 L23: -0.4568 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.0234 S13: 0.0056 REMARK 3 S21: -0.0028 S22: -0.0113 S23: -0.0132 REMARK 3 S31: -0.0002 S32: -0.0179 S33: 0.0126 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { L|116 L|219 } REMARK 3 ORIGIN FOR THE GROUP (A): -9.4704 11.0890 -27.4351 REMARK 3 T TENSOR REMARK 3 T11: 0.0042 T22: -0.0023 REMARK 3 T33: 0.0031 T12: -0.0005 REMARK 3 T13: 0.0121 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.0894 L22: 0.1508 REMARK 3 L33: 0.0893 L12: -0.2797 REMARK 3 L13: -0.3883 L23: 0.2859 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: 0.0024 S13: 0.0015 REMARK 3 S21: 0.0005 S22: 0.0001 S23: 0.0019 REMARK 3 S31: -0.0022 S32: 0.0050 S33: 0.0017 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { X|* } REMARK 3 ORIGIN FOR THE GROUP (A): -65.4379 -21.9292 -11.2392 REMARK 3 T TENSOR REMARK 3 T11: -0.1193 T22: -0.1596 REMARK 3 T33: 0.0773 T12: -0.0316 REMARK 3 T13: 0.0243 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 3.1941 L22: 1.3913 REMARK 3 L33: 1.7542 L12: 0.4639 REMARK 3 L13: -0.9044 L23: -1.1430 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: -0.0146 S13: 0.0161 REMARK 3 S21: -0.0232 S22: 0.0478 S23: 0.1366 REMARK 3 S31: 0.1239 S32: 0.0293 S33: -0.0608 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MO9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002459. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0005 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS MAY 1, 2016 BUILT=20160617 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18392 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.594 REMARK 200 RESOLUTION RANGE LOW (A) : 37.402 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.15800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.96300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1HCF REMARK 200 REMARK 200 REMARK: ROD-SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% W/V PEG 3350, 25 MM TRIS PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 74.18500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 74.18500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.71500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 131 REMARK 465 LYS H 132 REMARK 465 SER H 133 REMARK 465 THR H 134 REMARK 465 SER H 135 REMARK 465 SER H 218 REMARK 465 CYS H 219 REMARK 465 ASP H 220 REMARK 465 LYS H 221 REMARK 465 THR H 222 REMARK 465 HIS H 223 REMARK 465 MET X 276 REMARK 465 GLY X 277 REMARK 465 SER X 278 REMARK 465 VAL X 279 REMARK 465 ASN X 280 REMARK 465 LEU X 281 REMARK 465 THR X 282 REMARK 465 ASP X 385 REMARK 465 ASP X 386 REMARK 465 GLY X 387 REMARK 465 ALA X 388 REMARK 465 ASN X 389 REMARK 465 PRO X 390 REMARK 465 ASN X 391 REMARK 465 TYR X 392 REMARK 465 PRO X 393 REMARK 465 ASP X 394 REMARK 465 VAL X 395 REMARK 465 ILE X 396 REMARK 465 TYR X 397 REMARK 465 GLU X 398 REMARK 465 ASP X 399 REMARK 465 TYR X 400 REMARK 465 GLY X 401 REMARK 465 THR X 402 REMARK 465 ALA X 403 REMARK 465 ALA X 404 REMARK 465 ASN X 405 REMARK 465 ASP X 406 REMARK 465 ILE X 407 REMARK 465 GLY X 408 REMARK 465 ASP X 409 REMARK 465 THR X 410 REMARK 465 THR X 411 REMARK 465 ASN X 412 REMARK 465 ARG X 413 REMARK 465 SER X 414 REMARK 465 ASN X 415 REMARK 465 GLU X 416 REMARK 465 ILE X 417 REMARK 465 PRO X 418 REMARK 465 SER X 419 REMARK 465 THR X 420 REMARK 465 ASP X 421 REMARK 465 VAL X 422 REMARK 465 THR X 423 REMARK 465 ASP X 424 REMARK 465 LYS X 425 REMARK 465 THR X 426 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR H 100 -152.92 -148.53 REMARK 500 THR H 194 -51.71 -124.72 REMARK 500 VAL L 56 -52.66 63.86 REMARK 500 SER L 61 123.23 -37.53 REMARK 500 LYS L 131 39.87 -74.61 REMARK 500 SER L 132 -4.18 -156.08 REMARK 500 ASN L 143 78.64 42.66 REMARK 500 HIS X 339 -113.04 57.98 REMARK 500 REMARK 500 REMARK: NULL DBREF 5MO9 H 1 223 PDB 5MO9 5MO9 1 223 DBREF 5MO9 L 1 219 PDB 5MO9 5MO9 1 219 DBREF 5MO9 X 278 426 UNP Q16620 NTRK2_HUMAN 278 426 SEQADV 5MO9 MET X 276 UNP Q16620 INITIATING METHIONINE SEQADV 5MO9 GLY X 277 UNP Q16620 EXPRESSION TAG SEQRES 1 H 223 GLN VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL ARG SEQRES 2 H 223 PRO GLY ALA SER VAL THR LEU SER CYS LYS ALA SER GLY SEQRES 3 H 223 TYR THR PHE THR ASP TYR GLU MET HIS TRP VAL LYS GLN SEQRES 4 H 223 THR PRO VAL HIS GLY LEU GLU TRP ILE GLY THR ILE ASP SEQRES 5 H 223 PRO GLU THR ALA GLY THR ALA TYR ASN GLN LYS PHE LYS SEQRES 6 H 223 GLY LYS ALA ILE LEU THR ALA GLY LYS SER SER SER THR SEQRES 7 H 223 ALA TYR MET GLU LEU ARG SER LEU THR SER GLU ASP SER SEQRES 8 H 223 ALA VAL TYR TYR CYS THR GLY VAL THR THR TRP PHE ALA SEQRES 9 H 223 TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER ALA ALA SEQRES 10 H 223 SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 11 H 223 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 12 H 223 LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER SEQRES 13 H 223 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 14 H 223 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 15 H 223 SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN SEQRES 16 H 223 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 17 H 223 LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS ASP LYS SEQRES 18 H 223 THR HIS SEQRES 1 L 219 ASP VAL VAL MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 219 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN SER LEU VAL HIS SER ASN GLY ASN THR TYR LEU HIS SEQRES 4 L 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO ASN LEU LEU SEQRES 5 L 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 219 PHE CYS SER GLN GLY THR HIS VAL PRO TYR THR PHE GLY SEQRES 9 L 219 GLY GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 L 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 X 151 MET GLY SER VAL ASN LEU THR VAL HIS PHE ALA PRO THR SEQRES 2 X 151 ILE THR PHE LEU GLU SER PRO THR SER ASP HIS HIS TRP SEQRES 3 X 151 CYS ILE PRO PHE THR VAL LYS GLY ASN PRO LYS PRO ALA SEQRES 4 X 151 LEU GLN TRP PHE TYR ASN GLY ALA ILE LEU ASN GLU SER SEQRES 5 X 151 LYS TYR ILE CYS THR LYS ILE HIS VAL THR ASN HIS THR SEQRES 6 X 151 GLU TYR HIS GLY CYS LEU GLN LEU ASP ASN PRO THR HIS SEQRES 7 X 151 MET ASN ASN GLY ASP TYR THR LEU ILE ALA LYS ASN GLU SEQRES 8 X 151 TYR GLY LYS ASP GLU LYS GLN ILE SER ALA HIS PHE MET SEQRES 9 X 151 GLY TRP PRO GLY ILE ASP ASP GLY ALA ASN PRO ASN TYR SEQRES 10 X 151 PRO ASP VAL ILE TYR GLU ASP TYR GLY THR ALA ALA ASN SEQRES 11 X 151 ASP ILE GLY ASP THR THR ASN ARG SER ASN GLU ILE PRO SEQRES 12 X 151 SER THR ASP VAL THR ASP LYS THR FORMUL 4 HOH *169(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 GLN H 62 LYS H 65 5 4 HELIX 3 AA3 THR H 87 SER H 91 5 5 HELIX 4 AA4 SER H 190 LEU H 192 5 3 HELIX 5 AA5 GLU L 84 LEU L 88 5 5 HELIX 6 AA6 SER L 126 LYS L 131 1 6 HELIX 7 AA7 LYS L 188 LYS L 193 1 6 HELIX 8 AA8 THR X 352 ASN X 356 5 5 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 AA1 4 THR H 78 LEU H 83 -1 O MET H 81 N LEU H 20 SHEET 4 AA1 4 ALA H 68 GLY H 73 -1 N THR H 71 O TYR H 80 SHEET 1 AA2 6 GLU H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 110 VAL H 114 1 O THR H 113 N GLU H 10 SHEET 3 AA2 6 ALA H 92 GLY H 98 -1 N TYR H 94 O THR H 110 SHEET 4 AA2 6 MET H 34 THR H 40 -1 N VAL H 37 O TYR H 95 SHEET 5 AA2 6 GLY H 44 ASP H 52 -1 O GLU H 46 N LYS H 38 SHEET 6 AA2 6 GLY H 57 TYR H 60 -1 O ALA H 59 N THR H 50 SHEET 1 AA3 4 GLU H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 110 VAL H 114 1 O THR H 113 N GLU H 10 SHEET 3 AA3 4 ALA H 92 GLY H 98 -1 N TYR H 94 O THR H 110 SHEET 4 AA3 4 TYR H 105 TRP H 106 -1 O TYR H 105 N GLY H 98 SHEET 1 AA4 4 SER H 123 LEU H 127 0 SHEET 2 AA4 4 THR H 138 TYR H 148 -1 O LEU H 144 N PHE H 125 SHEET 3 AA4 4 TYR H 179 PRO H 188 -1 O VAL H 187 N ALA H 139 SHEET 4 AA4 4 VAL H 166 THR H 168 -1 N HIS H 167 O VAL H 184 SHEET 1 AA5 4 SER H 123 LEU H 127 0 SHEET 2 AA5 4 THR H 138 TYR H 148 -1 O LEU H 144 N PHE H 125 SHEET 3 AA5 4 TYR H 179 PRO H 188 -1 O VAL H 187 N ALA H 139 SHEET 4 AA5 4 VAL H 172 LEU H 173 -1 N VAL H 172 O SER H 180 SHEET 1 AA6 3 THR H 154 TRP H 157 0 SHEET 2 AA6 3 TYR H 197 HIS H 203 -1 O ASN H 200 N SER H 156 SHEET 3 AA6 3 THR H 208 VAL H 214 -1 O THR H 208 N HIS H 203 SHEET 1 AA7 4 MET L 4 THR L 7 0 SHEET 2 AA7 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 ASP L 75 ILE L 80 -1 O LEU L 78 N ILE L 21 SHEET 4 AA7 4 PHE L 67 SER L 72 -1 N SER L 68 O LYS L 79 SHEET 1 AA8 6 SER L 10 SER L 14 0 SHEET 2 AA8 6 THR L 107 LYS L 112 1 O GLU L 110 N VAL L 13 SHEET 3 AA8 6 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 AA8 6 LEU L 38 GLN L 43 -1 N TYR L 41 O PHE L 92 SHEET 5 AA8 6 ASN L 50 TYR L 54 -1 O LEU L 52 N TRP L 40 SHEET 6 AA8 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 AA9 4 SER L 10 SER L 14 0 SHEET 2 AA9 4 THR L 107 LYS L 112 1 O GLU L 110 N VAL L 13 SHEET 3 AA9 4 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 AA9 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 AB1 4 SER L 119 PHE L 123 0 SHEET 2 AB1 4 THR L 134 PHE L 144 -1 O ASN L 142 N SER L 119 SHEET 3 AB1 4 TYR L 178 SER L 187 -1 O SER L 182 N CYS L 139 SHEET 4 AB1 4 SER L 164 VAL L 168 -1 N SER L 167 O SER L 181 SHEET 1 AB2 4 ALA L 158 LEU L 159 0 SHEET 2 AB2 4 LYS L 150 VAL L 155 -1 N VAL L 155 O ALA L 158 SHEET 3 AB2 4 VAL L 196 THR L 202 -1 O ALA L 198 N LYS L 154 SHEET 4 AB2 4 VAL L 210 ASN L 215 -1 O VAL L 210 N VAL L 201 SHEET 1 AB3 4 PHE X 285 LEU X 292 0 SHEET 2 AB3 4 CYS X 302 ASN X 310 -1 O LYS X 308 N THR X 288 SHEET 3 AB3 4 GLU X 341 LEU X 348 -1 O TYR X 342 N VAL X 307 SHEET 4 AB3 4 ILE X 330 ASN X 338 -1 N VAL X 336 O HIS X 343 SHEET 1 AB4 4 ALA X 322 ILE X 323 0 SHEET 2 AB4 4 ALA X 314 TYR X 319 -1 N TYR X 319 O ALA X 322 SHEET 3 AB4 4 GLY X 357 ASN X 365 -1 O LYS X 364 N ALA X 314 SHEET 4 AB4 4 GLY X 368 ALA X 376 -1 O ASP X 370 N ALA X 363 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 2 CYS H 143 CYS H 199 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 93 1555 1555 2.05 SSBOND 4 CYS L 139 CYS L 199 1555 1555 2.03 SSBOND 5 CYS X 302 CYS X 345 1555 1555 2.03 CISPEP 1 GLY H 98 VAL H 99 0 2.68 CISPEP 2 PHE H 149 PRO H 150 0 -5.62 CISPEP 3 GLU H 151 PRO H 152 0 1.09 CISPEP 4 THR L 7 PRO L 8 0 1.03 CISPEP 5 VAL L 99 PRO L 100 0 1.93 CISPEP 6 TYR L 145 PRO L 146 0 0.24 CISPEP 7 ASN X 310 PRO X 311 0 1.25 CRYST1 148.370 55.430 69.390 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006740 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014411 0.00000